Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G01740 |
| prunus_persica | Prupe.1G333800_v2.0.a1 Prupe.1G333800_v2.0.a1 Prupe.1G333800_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr2g0123271 RchiOBHm_Chr4g0442881 RchiOBHm_Chr4g0442961 RchiOBHm_Chr4g0443001 |
| rosa_laevigata | RLG00000005963 RLG00000005969 RLG00000005972 RLG00000005974 RLG00000010013 |
| rosa_multiflora | Rmu_sc0001917.1_g000006 Rmu_sc0005806.1_g000015 Rmu_sc0007295.1_g000001 Rmu_sc0014119.1_g000001 Rmu_ssc0000204.1_g000003 Rmu_ssc0000204.1_g000010 |
| rosa_roxburghii | Rroxscaffold_5G00383640 |
| rosa_samantha | Rh2BG311500 Rh4AG397900 Rh4BG409100 Rh4BG409400 Rh4CG424900 Rh4DG403700 Rh4DG404200 |
| rosa_wichuraiana | Rw4G034270 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 699, 1773 |
| AarI | CACCTGC | 1 cut(s) | 42 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2591 |
| Acc36I | ACCTGC | 3 cut(s) | 42, 77, 1151 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1328 |
| AccBSI | CCGCTC | 1 cut(s) | 168 |
| AccI | GTMKAC | 5 cut(s) | 367, 1068, 1441, 2145, 2385 |
| AciI | CCGC | 4 cut(s) | 108, 166, 590, 914 |
| AcsI | RAATTY | 8 cut(s) | 308, 581, 838, 1045, 1382, 1654, 2122, 2274 |
| AcuI | CTGAAG | 3 cut(s) | 1044, 2252, 2326 |
| AfaI | GTAC | 3 cut(s) | 155, 1456, 1567 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 254, 1328, 1451 |
| AflIII | ACRYGT | 1 cut(s) | 1578 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 419, 451, 963, 995 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 451, 483, 1525, 1557 |
| Alw21I | GWGCWC | 2 cut(s) | 117, 1191 |
| Alw26I | GTCTC | 2 cut(s) | 148, 1732 |
| Ama87I | CYCGRG | 2 cut(s) | 55, 2429 |
| AoxI | GGCC | 3 cut(s) | 925, 1999, 2265 |
| ApeKI | GCWGC | 7 cut(s) | 544, 575, 902, 1055, 1976, 2132, 2639 |
| ApoI | RAATTY | 8 cut(s) | 308, 581, 838, 1045, 1382, 1654, 2122, 2274 |
| AseI | ATTAAT | 2 cut(s) | 237, 2295 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 585, 1202, 2339 |
| AsuHPI | GGTGA | 7 cut(s) | 23, 122, 155, 462, 563, 1536, 1645 |
| AsuII | TTCGAA | 1 cut(s) | 2172 |
| AvaI | CYCGRG | 2 cut(s) | 55, 2429 |
| BanII | GRGCYC | 3 cut(s) | 117, 1191, 1794 |
| BauI | CACGAG | 1 cut(s) | 1307 |
| BbsI | GAAGAC | 1 cut(s) | 2332 |
| Bbv12I | GWGCWC | 2 cut(s) | 117, 1191 |
| BbvI | GCAGC | 7 cut(s) | 531, 562, 889, 1067, 1963, 2144, 2626 |
| BceAI | ACGGC | 2 cut(s) | 836, 1492 |
| BclI | TGATCA | 4 cut(s) | 3, 877, 1951, 2607 |
| BcoDI | GTCTC | 2 cut(s) | 148, 1732 |
| BfaI | CTAG | 2 cut(s) | 947, 2058 |
| BfmI | CTRYAG | 2 cut(s) | 2146, 2589 |
| BfuAI | ACCTGC | 3 cut(s) | 42, 77, 1151 |
| BisI | GCNGC | 7 cut(s) | 545, 576, 903, 1056, 1977, 2133, 2640 |
| BlsI | GCNGC | 7 cut(s) | 546, 577, 904, 1057, 1978, 2134, 2641 |
| BmeT110I | CYCGRG | 2 cut(s) | 55, 2429 |
| BmsI | GCATC | 7 cut(s) | 234, 838, 1018, 1308, 1912, 2092, 2626 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1744 |
| BpiI | GAAGAC | 1 cut(s) | 2332 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 32 |
| BpmI | CTGGAG | 1 cut(s) | 981 |
| Bpu14I | TTCGAA | 1 cut(s) | 2172 |
| BpuEI | CTTGAG | 2 cut(s) | 1748, 2429 |
| BsaI | GGTCTC | 1 cut(s) | 148 |
| BsaJI | CCNNGG | 1 cut(s) | 2430 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 128, 158, 1202, 1232 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 254, 1328, 1451 |
| Bse1I | ACTGG | 1 cut(s) | 19 |
| BseDI | CCNNGG | 1 cut(s) | 2430 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 254, 1328, 1451 |
| BseMII | CTCAG | 3 cut(s) | 936, 1206, 2010 |
| BseNI | ACTGG | 1 cut(s) | 19 |
| BseXI | GCAGC | 7 cut(s) | 531, 562, 889, 1067, 1963, 2144, 2626 |
| BseYI | CCCAGC | 1 cut(s) | 2117 |
| BshFI | GGCC | 3 cut(s) | 927, 2001, 2267 |
| BsiHKAI | GWGCWC | 2 cut(s) | 117, 1191 |
| BsiHKCI | CYCGRG | 2 cut(s) | 55, 2429 |
| BslFI | GGGAC | 1 cut(s) | 1610 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 254, 1328, 1451 |
| BsmAI | GTCTC | 2 cut(s) | 148, 1732 |
| BsmFI | GGGAC | 1 cut(s) | 1610 |
| BsmI | GAATGC | 2 cut(s) | 667, 1950 |
| BsnI | GGCC | 3 cut(s) | 927, 2001, 2267 |
| Bso31I | GGTCTC | 1 cut(s) | 148 |
| BsoBI | CYCGRG | 2 cut(s) | 55, 2429 |
| Bsp119I | TTCGAA | 1 cut(s) | 2172 |
| Bsp1286I | GDGCHC | 3 cut(s) | 117, 1191, 1794 |
| Bsp143I | GATC | 7 cut(s) | 3, 877, 1000, 1951, 2074, 2479, 2607 |
| BspACI | CCGC | 4 cut(s) | 108, 166, 590, 914 |
| BspANI | GGCC | 3 cut(s) | 927, 2001, 2267 |
| BspCNI | CTCAG | 3 cut(s) | 935, 1205, 2009 |
| BspHI | TCATGA | 1 cut(s) | 2529 |
| BspMAI | CTGCAG | 1 cut(s) | 2593 |
| BspMI | ACCTGC | 3 cut(s) | 42, 77, 1151 |
| BspQI | GCTCTTC | 2 cut(s) | 175, 736 |
| BspT104I | TTCGAA | 1 cut(s) | 2172 |
| BspTNI | GGTCTC | 1 cut(s) | 148 |
| BsrBI | CCGCTC | 1 cut(s) | 168 |
| BsrI | ACTGG | 1 cut(s) | 19 |
| BssECI | CCNNGG | 1 cut(s) | 2430 |
| BssMI | GATC | 7 cut(s) | 3, 877, 1000, 1951, 2074, 2479, 2607 |
| BssNAI | GTATAC | 2 cut(s) | 1442, 2386 |
| BssSI | CACGAG | 1 cut(s) | 1307 |
| Bst1107I | GTATAC | 2 cut(s) | 1442, 2386 |
| Bst2BI | CACGAG | 1 cut(s) | 1307 |
| Bst4CI | ACNGT | 3 cut(s) | 1125, 1181, 1752 |
| Bst6I | CTCTTC | 6 cut(s) | 175, 455, 605, 736, 1249, 1529 |
| BstBI | TTCGAA | 1 cut(s) | 2172 |
| BstC8I | GCNNGC | 4 cut(s) | 263, 1337, 1799, 2219 |
| BstDEI | CTNAG | 6 cut(s) | 762, 922, 1192, 1836, 1996, 2321 |
| BstEII | GGTNACC | 1 cut(s) | 29 |
| BstKTI | GATC | 7 cut(s) | 6, 880, 1003, 1954, 2077, 2482, 2610 |
| BstMAI | GTCTC | 2 cut(s) | 148, 1732 |
| BstMBI | GATC | 7 cut(s) | 3, 877, 1000, 1951, 2074, 2479, 2607 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 105, 911, 1170, 1798, 2253 |
| BstNSI | RCATGY | 2 cut(s) | 1582, 1801 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1744 |
| BstPI | GGTNACC | 1 cut(s) | 29 |
| BstSFI | CTRYAG | 2 cut(s) | 2146, 2589 |
| BstV1I | GCAGC | 7 cut(s) | 531, 562, 889, 1067, 1963, 2144, 2626 |
| BstV2I | GAAGAC | 1 cut(s) | 2332 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 26 |
| BstZ17I | GTATAC | 2 cut(s) | 1442, 2386 |
| BsuRI | GGCC | 3 cut(s) | 927, 2001, 2267 |
| BtsIMutI | CAGTG | 2 cut(s) | 1200, 1748 |
| BveI | ACCTGC | 3 cut(s) | 42, 77, 1151 |
| Cac8I | GCNNGC | 4 cut(s) | 263, 1337, 1799, 2219 |
| CciI | TCATGA | 1 cut(s) | 2529 |
| Csp6I | GTAC | 3 cut(s) | 154, 1455, 1566 |
| CviAII | CATG | 8 cut(s) | 355, 875, 1579, 1798, 1949, 2098, 2222, 2530 |
| CviQI | GTAC | 3 cut(s) | 154, 1455, 1566 |
| DdeI | CTNAG | 6 cut(s) | 762, 922, 1192, 1836, 1996, 2321 |
| DpnI | GATC | 7 cut(s) | 5, 879, 1002, 1953, 2076, 2481, 2609 |
| DpnII | GATC | 7 cut(s) | 3, 877, 1000, 1951, 2074, 2479, 2607 |
| DraI | TTTAAA | 3 cut(s) | 828, 1050, 2127 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2591 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2591 |
| Eam1104I | CTCTTC | 6 cut(s) | 175, 455, 605, 736, 1249, 1529 |
| EarI | CTCTTC | 6 cut(s) | 175, 455, 605, 736, 1249, 1529 |
| Ecl136II | GAGCTC | 2 cut(s) | 115, 1189 |
| Eco147I | AGGCCT | 2 cut(s) | 927, 2001 |
| Eco24I | GRGCYC | 3 cut(s) | 117, 1191, 1794 |
| Eco31I | GGTCTC | 1 cut(s) | 148 |
| Eco53kI | GAGCTC | 2 cut(s) | 115, 1189 |
| Eco57I | CTGAAG | 3 cut(s) | 1044, 2252, 2326 |
| Eco88I | CYCGRG | 2 cut(s) | 55, 2429 |
| Eco91I | GGTNACC | 1 cut(s) | 29 |
| EcoICRI | GAGCTC | 2 cut(s) | 115, 1189 |
| EcoO65I | GGTNACC | 1 cut(s) | 29 |
| EcoT22I | ATGCAT | 4 cut(s) | 876, 1033, 1950, 2107 |
| EcoT38I | GRGCYC | 3 cut(s) | 117, 1191, 1794 |
| FaeI | CATG | 8 cut(s) | 358, 878, 1582, 1801, 1952, 2101, 2225, 2533 |
| FaqI | GGGAC | 1 cut(s) | 1610 |
| FatI | CATG | 8 cut(s) | 354, 874, 1578, 1797, 1948, 2097, 2221, 2529 |
| FauNDI | CATATG | 2 cut(s) | 907, 1981 |
| FbaI | TGATCA | 4 cut(s) | 3, 877, 1951, 2607 |
| FblI | GTMKAC | 5 cut(s) | 367, 1068, 1441, 2145, 2385 |
| Fnu4HI | GCNGC | 7 cut(s) | 545, 576, 903, 1056, 1977, 2133, 2640 |
| FriOI | GRGCYC | 3 cut(s) | 117, 1191, 1794 |
| Fsp4HI | GCNGC | 7 cut(s) | 545, 576, 903, 1056, 1977, 2133, 2640 |
| FspBI | CTAG | 2 cut(s) | 947, 2058 |
| GluI | GCNGC | 7 cut(s) | 545, 576, 903, 1056, 1977, 2133, 2640 |
| GsaI | CCCAGC | 1 cut(s) | 2121 |
| GsuI | CTGGAG | 1 cut(s) | 981 |
| HaeIII | GGCC | 3 cut(s) | 927, 2001, 2267 |
| Hin1II | CATG | 8 cut(s) | 358, 878, 1582, 1801, 1952, 2101, 2225, 2533 |
| HincII | GTYRAC | 1 cut(s) | 2487 |
| HindII | GTYRAC | 1 cut(s) | 2487 |
| HindIII | AAGCTT | 4 cut(s) | 327, 432, 1401, 2650 |
| HinfI | GANTC | 7 cut(s) | 58, 1313, 2188, 2442, 2526, 2574, 2585 |
| HpaI | GTTAAC | 1 cut(s) | 2487 |
| HphI | GGTGA | 7 cut(s) | 23, 122, 155, 462, 563, 1536, 1645 |
| Hpy166II | GTNNAC | 9 cut(s) | 368, 470, 1069, 1442, 1544, 1876, 2146, 2386, 2487 |
| Hpy188III | TCNNGA | 7 cut(s) | 55, 998, 2072, 2372, 2446, 2530, 2582 |
| Hpy8I | GTNNAC | 9 cut(s) | 368, 470, 1069, 1442, 1544, 1876, 2146, 2386, 2487 |
| HpyAV | CCTTC | 6 cut(s) | 557, 1630, 2227, 2306, 2329, 2621 |
| HpyCH4III | ACNGT | 3 cut(s) | 1125, 1181, 1752 |
| HpyCH4IV | ACGT | 1 cut(s) | 1457 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 105, 911, 1170, 1798, 2253 |
| HpyF3I | CTNAG | 6 cut(s) | 762, 922, 1192, 1836, 1996, 2321 |
| HpySE526I | ACGT | 1 cut(s) | 1457 |
| Hsp92II | CATG | 8 cut(s) | 358, 878, 1582, 1801, 1952, 2101, 2225, 2533 |
| Ksp22I | TGATCA | 4 cut(s) | 3, 877, 1951, 2607 |
| KspAI | GTTAAC | 1 cut(s) | 2487 |
| Kzo9I | GATC | 7 cut(s) | 3, 877, 1000, 1951, 2074, 2479, 2607 |
| LguI | GCTCTTC | 2 cut(s) | 175, 736 |
| LmnI | GCTCC | 6 cut(s) | 57, 84, 104, 1000, 1158, 1178 |
| Lsp1109I | GCAGC | 7 cut(s) | 531, 562, 889, 1067, 1963, 2144, 2626 |
| LweI | GCATC | 7 cut(s) | 234, 838, 1018, 1308, 1912, 2092, 2626 |
| MaeI | CTAG | 2 cut(s) | 947, 2058 |
| MaeII | ACGT | 1 cut(s) | 1457 |
| MalI | GATC | 7 cut(s) | 5, 879, 1002, 1953, 2076, 2481, 2609 |
| MbiI | CCGCTC | 1 cut(s) | 168 |
| MboI | GATC | 7 cut(s) | 3, 877, 1000, 1951, 2074, 2479, 2607 |
| MhlI | GDGCHC | 3 cut(s) | 117, 1191, 1794 |
| MlyI | GAGTC | 5 cut(s) | 67, 2182, 2436, 2520, 2579 |
| MmeI | TCCRAC | 2 cut(s) | 126, 1200 |
| Mph1103I | ATGCAT | 4 cut(s) | 876, 1033, 1950, 2107 |
| MroXI | GAANNNNTTC | 3 cut(s) | 585, 1202, 2339 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1883 |
| MspA1I | CMGCKG | 1 cut(s) | 1871 |
| Mva1269I | GAATGC | 2 cut(s) | 667, 1950 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 105, 911, 1170, 1798, 2253 |
| NdeI | CATATG | 2 cut(s) | 907, 1981 |
| NdeII | GATC | 7 cut(s) | 3, 877, 1000, 1951, 2074, 2479, 2607 |
| NlaIII | CATG | 8 cut(s) | 358, 878, 1582, 1801, 1952, 2101, 2225, 2533 |
| NmeAIII | GCCGAG | 1 cut(s) | 273 |
| NmuCI | GTSAC | 5 cut(s) | 29, 491, 672, 1746, 2185 |
| NsiI | ATGCAT | 4 cut(s) | 876, 1033, 1950, 2107 |
| NspI | RCATGY | 2 cut(s) | 1582, 1801 |
| NspV | TTCGAA | 1 cut(s) | 2172 |
| PacI | TTAATTAA | 1 cut(s) | 711 |
| PaeI | GCATGC | 1 cut(s) | 1801 |
| PagI | TCATGA | 1 cut(s) | 2529 |
| PaqCI | CACCTGC | 1 cut(s) | 42 |
| PceI | AGGCCT | 2 cut(s) | 927, 2001 |
| PciI | ACATGT | 1 cut(s) | 1578 |
| PciSI | GCTCTTC | 2 cut(s) | 175, 736 |
| PctI | GAATGC | 2 cut(s) | 667, 1950 |
| PdmI | GAANNNNTTC | 3 cut(s) | 585, 1202, 2339 |
| PfeI | GAWTC | 2 cut(s) | 1313, 2574 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1328 |
| PkrI | GCNGC | 7 cut(s) | 546, 577, 904, 1057, 1978, 2134, 2641 |
| PleI | GAGTC | 5 cut(s) | 66, 2182, 2436, 2520, 2579 |
| PpsI | GAGTC | 5 cut(s) | 66, 2182, 2436, 2520, 2579 |
| PscI | ACATGT | 1 cut(s) | 1578 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1744 |
| PshBI | ATTAAT | 2 cut(s) | 237, 2295 |
| PsiI | TTATAA | 2 cut(s) | 699, 1773 |
| Psp124BI | GAGCTC | 2 cut(s) | 117, 1191 |
| PspEI | GGTNACC | 1 cut(s) | 29 |
| PspFI | CCCAGC | 1 cut(s) | 2117 |
| PstI | CTGCAG | 1 cut(s) | 2593 |
| PvuII | CAGCTG | 1 cut(s) | 1871 |
| RsaI | GTAC | 3 cut(s) | 155, 1456, 1567 |
| RsaNI | GTAC | 3 cut(s) | 154, 1455, 1566 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1883 |
| SacI | GAGCTC | 2 cut(s) | 117, 1191 |
| SapI | GCTCTTC | 2 cut(s) | 175, 736 |
| SatI | GCNGC | 7 cut(s) | 545, 576, 903, 1056, 1977, 2133, 2640 |
| Sau3AI | GATC | 7 cut(s) | 3, 877, 1000, 1951, 2074, 2479, 2607 |
| SchI | GAGTC | 5 cut(s) | 67, 2182, 2436, 2520, 2579 |
| SduI | GDGCHC | 3 cut(s) | 117, 1191, 1794 |
| SfaNI | GCATC | 7 cut(s) | 234, 838, 1018, 1308, 1912, 2092, 2626 |
| SfcI | CTRYAG | 2 cut(s) | 2146, 2589 |
| SfuI | TTCGAA | 1 cut(s) | 2172 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1883 |
| SmlI | CTYRAG | 2 cut(s) | 1727, 2444 |
| SmoI | CTYRAG | 2 cut(s) | 1727, 2444 |
| SphI | GCATGC | 1 cut(s) | 1801 |
| SseBI | AGGCCT | 2 cut(s) | 927, 2001 |
| SsiI | CCGC | 4 cut(s) | 108, 166, 590, 914 |
| SspMI | CTAG | 2 cut(s) | 947, 2058 |
| SstI | GAGCTC | 2 cut(s) | 117, 1191 |
| StuI | AGGCCT | 2 cut(s) | 927, 2001 |
| TaaI | ACNGT | 3 cut(s) | 1125, 1181, 1752 |
| TaiI | ACGT | 1 cut(s) | 1460 |
| TaqI | TCGA | 5 cut(s) | 242, 603, 1316, 2172, 2440 |
| TfiI | GAWTC | 2 cut(s) | 1313, 2574 |
| TscAI | CASTG | 2 cut(s) | 1200, 1755 |
| TseFI | GTSAC | 5 cut(s) | 29, 491, 672, 1746, 2185 |
| TseI | GCWGC | 7 cut(s) | 544, 575, 902, 1055, 1976, 2132, 2639 |
| Tsp45I | GTSAC | 5 cut(s) | 29, 491, 672, 1746, 2185 |
| TspRI | CASTG | 2 cut(s) | 1200, 1755 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1328 |
| VspI | ATTAAT | 2 cut(s) | 237, 2295 |
| XapI | RAATTY | 8 cut(s) | 308, 581, 838, 1045, 1382, 1654, 2122, 2274 |
| XceI | RCATGY | 2 cut(s) | 1582, 1801 |
| XmiI | GTMKAC | 5 cut(s) | 367, 1068, 1441, 2145, 2385 |
| XmnI | GAANNNNTTC | 3 cut(s) | 585, 1202, 2339 |
| XspI | CTAG | 2 cut(s) | 947, 2058 |
| Zsp2I | ATGCAT | 4 cut(s) | 876, 1033, 1950, 2107 |