Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005806.1

Orthogroup ID

OG0005755

Physical Location & Seq

Genomic Coordinates Forward (+)

55640 .. 56047

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005806.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atggagggggttagggttagtcttgatgcggctgcatatggagtggtgatctcaggcctatgtaataatggtcagtttgataatgcgatgctggttgttacagattcggctatgagtggtttttctccatataagatgttgttgccgaccattatggaagcatgtttcaaatctggcaatttgaaagcagctttgggcatctacagattagaaaagggttttgaaccagatgctatggtgcttttagctttgatggatggcttatgcaagcatgggcgtttggaggaggcaagaggctacatttgcaaggaaaaggctaatgaaatatcatatattgtgctcattgttaggatgtgtaaggaagcaaactttagtgcagttgagacgatctttagtgagatgtcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

135

Amino Acids

14.73

Weight (kDa)

5.17

Isoelectric Point (pI)

23.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01740
prunus_persica	Prupe.1G333800_v2.0.a1 Prupe.1G333800_v2.0.a1 Prupe.1G333800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0123271 RchiOBHm_Chr4g0442881 RchiOBHm_Chr4g0442961 RchiOBHm_Chr4g0443001
rosa_laevigata	RLG00000005963 RLG00000005969 RLG00000005972 RLG00000005974 RLG00000010013
rosa_multiflora	Rmu_sc0001917.1_g000006 Rmu_sc0005806.1_g000015 Rmu_sc0007295.1_g000001 Rmu_sc0014119.1_g000001 Rmu_ssc0000204.1_g000003 Rmu_ssc0000204.1_g000010
rosa_roxburghii	Rroxscaffold_5G00383640
rosa_samantha	Rh2BG311500 Rh4AG397900 Rh4BG409100 Rh4BG409400 Rh4CG424900 Rh4DG403700 Rh4DG404200
rosa_wichuraiana	Rw4G034270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	29
AgsI	TTSAA	3 cut(s)	169, 184, 224
AjuI	GAANNNNNNNTTGG	2 cut(s)	176, 208
AluBI	AGCT	2 cut(s)	191, 248
AluI	AGCT	2 cut(s)	191, 248
Alw21I	GWGCWC	1 cut(s)	342
Alw26I	GTCTC	1 cut(s)	377
AoxI	GGCC	1 cut(s)	55
ApeKI	GCWGC	2 cut(s)	32, 188
AsuHPI	GGTGA	1 cut(s)	58
Bbv12I	GWGCWC	1 cut(s)	342
BbvI	GCAGC	2 cut(s)	19, 200
BccI	CCATC	2 cut(s)	247, 251
BcoDI	GTCTC	1 cut(s)	377
BfaI	CTAG	1 cut(s)	406
BfmI	CTRYAG	1 cut(s)	202
BisI	GCNGC	3 cut(s)	30, 33, 189
BlsI	GCNGC	3 cut(s)	31, 34, 190
BmsI	GCATC	4 cut(s)	16, 78, 207, 220
BseGI	GGATG	2 cut(s)	262, 357
BseMII	CTCAG	1 cut(s)	66
BseRI	GAGGAG	1 cut(s)	299
BseXI	GCAGC	2 cut(s)	19, 200
BsgI	GTGCAG	1 cut(s)	396
BshFI	GGCC	1 cut(s)	57
BsiHKAI	GWGCWC	1 cut(s)	342
BsmAI	GTCTC	1 cut(s)	377
BsmBI	CGTCTC	1 cut(s)	377
BsnI	GGCC	1 cut(s)	57
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp143I	GATC	2 cut(s)	48, 387
BspACI	CCGC	1 cut(s)	29
BspANI	GGCC	1 cut(s)	57
BspCNI	CTCAG	1 cut(s)	65
BssMI	GATC	2 cut(s)	48, 387
BstC8I	GCNNGC	1 cut(s)	269
BstDEI	CTNAG	1 cut(s)	52
BstF5I	GGATG	2 cut(s)	262, 357
BstKTI	GATC	2 cut(s)	51, 390
BstMAI	GTCTC	1 cut(s)	377
BstMBI	GATC	2 cut(s)	48, 387
BstMWI	GCNNNNNNNGC	1 cut(s)	303
BstNSI	RCATGY	1 cut(s)	165
BstSFI	CTRYAG	1 cut(s)	202
BstV1I	GCAGC	2 cut(s)	19, 200
BsuRI	GGCC	1 cut(s)	57
BtgZI	GCGATG	1 cut(s)	101
BtsCI	GGATG	2 cut(s)	262, 357
Cac8I	GCNNGC	1 cut(s)	269
CviAII	CATG	2 cut(s)	162, 272
CviJI	RGCY	8 cut(s)	32, 57, 110, 191, 248, 261, 297, 317
CviKI_1	RGCY	8 cut(s)	32, 57, 110, 191, 248, 261, 297, 317
DdeI	CTNAG	1 cut(s)	52
DpnI	GATC	2 cut(s)	50, 389
DpnII	GATC	2 cut(s)	48, 387
Eco147I	AGGCCT	1 cut(s)	57
Esp3I	CGTCTC	1 cut(s)	377
FaeI	CATG	2 cut(s)	165, 275
FatI	CATG	2 cut(s)	161, 271
FauNDI	CATATG	1 cut(s)	37
Fnu4HI	GCNGC	3 cut(s)	30, 33, 189
FokI	GGATG	2 cut(s)	269, 364
Fsp4HI	GCNGC	3 cut(s)	30, 33, 189
FspBI	CTAG	1 cut(s)	406
GluI	GCNGC	3 cut(s)	30, 33, 189
HaeIII	GGCC	1 cut(s)	57
Hin1II	CATG	2 cut(s)	165, 275
HinfI	GANTC	1 cut(s)	104
HphI	GGTGA	1 cut(s)	58
Hpy188III	TCNNGA	1 cut(s)	23
HpyCH4V	TGCA	4 cut(s)	35, 267, 306, 377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	303
HpyF3I	CTNAG	1 cut(s)	52
Hsp92II	CATG	2 cut(s)	165, 275
Kzo9I	GATC	2 cut(s)	48, 387
LpnPI	CCDG	4 cut(s)	39, 77, 159, 240
Lsp1109I	GCAGC	2 cut(s)	19, 200
LweI	GCATC	4 cut(s)	16, 78, 207, 220
MaeI	CTAG	1 cut(s)	406
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	2 cut(s)	50, 389
MboI	GATC	2 cut(s)	48, 387
MhlI	GDGCHC	1 cut(s)	342
MluCI	AATT	1 cut(s)	178
MnlI	CCTC	3 cut(s)	277, 280, 287
MwoI	GCNNNNNNNGC	1 cut(s)	303
NdeI	CATATG	1 cut(s)	37
NdeII	GATC	2 cut(s)	48, 387
NlaIII	CATG	2 cut(s)	165, 275
NspI	RCATGY	1 cut(s)	165
PceI	AGGCCT	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	104
PkrI	GCNGC	3 cut(s)	31, 34, 190
SatI	GCNGC	3 cut(s)	30, 33, 189
Sau3AI	GATC	2 cut(s)	48, 387
SduI	GDGCHC	1 cut(s)	342
SetI	ASST	2 cut(s)	193, 250
SfaNI	GCATC	4 cut(s)	16, 78, 207, 220
SfcI	CTRYAG	1 cut(s)	202
Sse9I	AATT	1 cut(s)	178
SseBI	AGGCCT	1 cut(s)	57
SsiI	CCGC	1 cut(s)	29
SspMI	CTAG	1 cut(s)	406
StuI	AGGCCT	1 cut(s)	57
TasI	AATT	1 cut(s)	178
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	104
TseI	GCWGC	2 cut(s)	32, 188
TspDTI	ATGAA	1 cut(s)	336
XceI	RCATGY	1 cut(s)	165
XspI	CTAG	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.