Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001917.1

Orthogroup ID

OG0005755

Physical Location & Seq

Genomic Coordinates Reverse (-)

31594 .. 32857

Gene Structure 1264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001917.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

atgaatgatcagacaaaccctcaaattcttcgctcgcttgcaaagaacctcaaagccccaatgtcttttgatctcaataggtccaactgcggtgacgtctctctcaaaatcctctctgatttggtctccaaagggtacaaacctcacccctattcgttcaattcagttatctcctttttgtgtaaactgggtcatgtcaactcggcccagaagctcacaatttcaatgccgattttcgggtgccggcccgatattgtaacatacaattgtttgattaactctgtcatattgatgaggaggataaggtacattgatagacatgttttgcaagatgggggatttggatttgggtatagggtgtatggttatatggtgaaggataaggtgtcgccggatttgtttgcttttacttgcttgattgatgggtattgtaaggctggtaatttggaggttgcatttgaattgctagagggaatgaagaaatcgttatttttaccgaatgtggtgacttatagtgctttgattgatgggctgtgcaagaatgggaagttggaaagagctaagcgtttgttttgtgaaatggtggaacatggggttcggcctagttcagcggtttacacctcaatgatagatgggcatttcaagaaaggaaatgtagatgaggccatgaagtatatgagtaaaatatgggatggaagggttagtcttgatgccgctgcatatggagtggtggtctcaggcctctgtaataatggtcagttcgataatgcgatgcgggttgttacagatgatttcgccatgagtggtttttctccagataagatgttgttgacgaccattatggatgtatgtttcaaagctggcaatttgaaagcaggtttgggtgtctacagattgttagcaaagggttttgaaccagatgctttggtgctttcagctttgatggacggcttatgcaagcatgggcatttcaaggaggcaagaggctacttttgcaaggaaaaggctaatgagatttcatatactgtgctcattgatgggatgtgtaaggaagaaaactttagtgatgttgagacgatcttcagtgatatgttgggctatgcagacaatcttcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

372

Amino Acids

41.38

Weight (kDa)

8.13

Isoelectric Point (pI)

21.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01740
prunus_persica	Prupe.1G333800_v2.0.a1 Prupe.1G333800_v2.0.a1 Prupe.1G333800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0123271 RchiOBHm_Chr4g0442881 RchiOBHm_Chr4g0442961 RchiOBHm_Chr4g0443001
rosa_laevigata	RLG00000005963 RLG00000005969 RLG00000005972 RLG00000005974 RLG00000010013
rosa_multiflora	Rmu_sc0001917.1_g000006 Rmu_sc0005806.1_g000015 Rmu_sc0007295.1_g000001 Rmu_sc0014119.1_g000001 Rmu_ssc0000204.1_g000003 Rmu_ssc0000204.1_g000010
rosa_roxburghii	Rroxscaffold_5G00383640
rosa_samantha	Rh2BG311500 Rh4AG397900 Rh4BG409100 Rh4BG409400 Rh4CG424900 Rh4DG403700 Rh4DG404200
rosa_wichuraiana	Rw4G034270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	99
Acc36I	ACCTGC	1 cut(s)	866
AccB1I	GGYRCC	1 cut(s)	240
AccI	GTMKAC	1 cut(s)	888
AciI	CCGC	4 cut(s)	90, 611, 714, 775
AcsI	RAATTY	1 cut(s)	24
AcuI	CTGAAG	2 cut(s)	1066, 1097
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	2 cut(s)	137, 308
AfiI	CCNNNNNNNGG	1 cut(s)	236
AflIII	ACRYGT	1 cut(s)	319
AgsI	TTSAA	8 cut(s)	160, 225, 461, 643, 856, 871, 914, 973
AjuI	GAANNNNNNNTTGG	4 cut(s)	533, 565, 863, 895
AluBI	AGCT	4 cut(s)	214, 560, 860, 938
AluI	AGCT	4 cut(s)	214, 560, 860, 938
Alw21I	GWGCWC	1 cut(s)	1032
Alw26I	GTCTC	4 cut(s)	103, 130, 739, 1067
AoxI	GGCC	5 cut(s)	204, 245, 599, 663, 739
ApeKI	GCWGC	1 cut(s)	716
ApoI	RAATTY	1 cut(s)	24
AspS9I	GGNCC	3 cut(s)	81, 205, 246
AsuHPI	GGTGA	4 cut(s)	104, 137, 385, 517
AvaII	GGWCC	1 cut(s)	81
BanI	GGYRCC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	1032
BbvI	GCAGC	1 cut(s)	703
BccI	CCATC	7 cut(s)	326, 416, 521, 626, 686, 937, 1031
BceAI	ACGGC	1 cut(s)	964
BclI	TGATCA	1 cut(s)	7
BcoDI	GTCTC	4 cut(s)	103, 130, 739, 1067
BfaI	CTAG	2 cut(s)	467, 603
BfmI	CTRYAG	1 cut(s)	889
BfuAI	ACCTGC	1 cut(s)	866
BisI	GCNGC	2 cut(s)	714, 717
BlpI	GCTNAGC	1 cut(s)	561
BlsI	GCNGC	2 cut(s)	715, 718
Bme18I	GGWCC	1 cut(s)	81
BmgT120I	GGNCC	3 cut(s)	81, 205, 246
BmiI	GGNNCC	1 cut(s)	242
BmrI	ACTGGG	1 cut(s)	197
BmsI	GCATC	3 cut(s)	700, 762, 910
BmuI	ACTGGG	1 cut(s)	197
BpmI	CTGGAG	1 cut(s)	798
Bpu1102I	GCTNAGC	1 cut(s)	561
BsaHI	GRCGYC	1 cut(s)	96
BsaI	GGTCTC	2 cut(s)	130, 739
BsaXI	ACNNNNNCTCC	2 cut(s)	717, 747
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse118I	RCCGGY	1 cut(s)	243
Bse1I	ACTGG	1 cut(s)	192
BseGI	GGATG	3 cut(s)	697, 850, 1047
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseMII	CTCAG	1 cut(s)	750
BseNI	ACTGG	1 cut(s)	192
BseRI	GAGGAG	1 cut(s)	310
BseXI	GCAGC	1 cut(s)	703
BshFI	GGCC	5 cut(s)	206, 247, 601, 665, 741
BshNI	GGYRCC	1 cut(s)	240
BsiHKAI	GWGCWC	1 cut(s)	1032
BsiSI	CCGG	2 cut(s)	244, 392
BslI	CCNNNNNNNGG	1 cut(s)	236
BsmAI	GTCTC	4 cut(s)	103, 130, 739, 1067
BsmBI	CGTCTC	2 cut(s)	103, 1067
BsnI	GGCC	5 cut(s)	206, 247, 601, 665, 741
Bso31I	GGTCTC	2 cut(s)	130, 739
Bsp1286I	GDGCHC	1 cut(s)	1032
Bsp143I	GATC	3 cut(s)	7, 70, 1077
Bsp1720I	GCTNAGC	1 cut(s)	561
BspACI	CCGC	4 cut(s)	90, 611, 714, 775
BspANI	GGCC	5 cut(s)	206, 247, 601, 665, 741
BspCNI	CTCAG	1 cut(s)	749
BspLI	GGNNCC	1 cut(s)	242
BspMI	ACCTGC	1 cut(s)	866
BspT107I	GGYRCC	1 cut(s)	240
BspTNI	GGTCTC	2 cut(s)	130, 739
BsrFI	RCCGGY	1 cut(s)	243
BsrI	ACTGG	1 cut(s)	192
BssAI	RCCGGY	1 cut(s)	243
BssMI	GATC	3 cut(s)	7, 70, 1077
BssNI	GRCGYC	1 cut(s)	96
Bst4CI	ACNGT	1 cut(s)	1027
BstACI	GRCGYC	1 cut(s)	96
BstC8I	GCNNGC	5 cut(s)	35, 39, 245, 862, 959
BstDEI	CTNAG	2 cut(s)	561, 736
BstF5I	GGATG	3 cut(s)	697, 850, 1047
BstKTI	GATC	3 cut(s)	10, 73, 1080
BstMAI	GTCTC	4 cut(s)	103, 130, 739, 1067
BstMBI	GATC	3 cut(s)	7, 70, 1077
BstMWI	GCNNNNNNNGC	1 cut(s)	993
BstNSI	RCATGY	1 cut(s)	323
BstSFI	CTRYAG	1 cut(s)	889
BstV1I	GCAGC	1 cut(s)	703
BsuRI	GGCC	5 cut(s)	206, 247, 601, 665, 741
BtgZI	GCGATG	1 cut(s)	785
BtsCI	GGATG	3 cut(s)	697, 850, 1047
BtsIMutI	CAGTG	1 cut(s)	1090
BveI	ACCTGC	1 cut(s)	866
Cac8I	GCNNGC	5 cut(s)	35, 39, 245, 862, 959
Cfr10I	RCCGGY	1 cut(s)	243
Cfr13I	GGNCC	3 cut(s)	81, 205, 246
Csp6I	GTAC	2 cut(s)	136, 307
CviAII	CATG	6 cut(s)	194, 320, 590, 667, 799, 962
CviQI	GTAC	2 cut(s)	136, 307
DdeI	CTNAG	2 cut(s)	561, 736
DpnI	GATC	3 cut(s)	9, 72, 1079
DpnII	GATC	3 cut(s)	7, 70, 1077
Eco147I	AGGCCT	1 cut(s)	741
Eco31I	GGTCTC	2 cut(s)	130, 739
Eco47I	GGWCC	1 cut(s)	81
Eco57I	CTGAAG	2 cut(s)	1066, 1097
Esp3I	CGTCTC	2 cut(s)	103, 1067
FaeI	CATG	6 cut(s)	197, 323, 593, 670, 802, 965
FatI	CATG	6 cut(s)	193, 319, 589, 666, 798, 961
FauI	CCCGC	1 cut(s)	768
FauNDI	CATATG	1 cut(s)	721
FbaI	TGATCA	1 cut(s)	7
FblI	GTMKAC	1 cut(s)	888
Fnu4HI	GCNGC	2 cut(s)	714, 717
FokI	GGATG	3 cut(s)	704, 857, 1054
Fsp4HI	GCNGC	2 cut(s)	714, 717
FspBI	CTAG	2 cut(s)	467, 603
GluI	GCNGC	2 cut(s)	714, 717
GsuI	CTGGAG	1 cut(s)	798
HaeIII	GGCC	5 cut(s)	206, 247, 601, 665, 741
HapII	CCGG	2 cut(s)	244, 392
Hin1I	GRCGYC	1 cut(s)	96
Hin1II	CATG	6 cut(s)	197, 323, 593, 670, 802, 965
HincII	GTYRAC	2 cut(s)	199, 831
HindII	GTYRAC	2 cut(s)	199, 831
HpaII	CCGG	2 cut(s)	244, 392
HphI	GGTGA	4 cut(s)	104, 137, 385, 517
Hpy166II	GTNNAC	5 cut(s)	185, 199, 616, 831, 889
Hpy188I	TCNGA	2 cut(s)	12, 118
Hpy188III	TCNNGA	3 cut(s)	643, 707, 815
Hpy8I	GTNNAC	5 cut(s)	185, 199, 616, 831, 889
HpyAV	CCTTC	2 cut(s)	370, 690
HpyCH4III	ACNGT	1 cut(s)	1027
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	8 cut(s)	41, 328, 455, 537, 719, 957, 996, 1103
HpyF10VI	GCNNNNNNNGC	1 cut(s)	993
HpyF3I	CTNAG	2 cut(s)	561, 736
HpySE526I	ACGT	1 cut(s)	96
Hsp92I	GRCGYC	1 cut(s)	96
Hsp92II	CATG	6 cut(s)	197, 323, 593, 670, 802, 965
KroI	GCCGGC	1 cut(s)	243
KroNI	GCCGGC	1 cut(s)	245
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	3 cut(s)	7, 70, 1077
Lsp1109I	GCAGC	1 cut(s)	703
LweI	GCATC	3 cut(s)	700, 762, 910
MaeI	CTAG	2 cut(s)	467, 603
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	4 cut(s)	92, 256, 505, 781
MalI	GATC	3 cut(s)	9, 72, 1079
MboI	GATC	3 cut(s)	7, 70, 1077
MboII	GAAGA	5 cut(s)	20, 490, 1064, 1072, 1103
MfeI	CAATTG	1 cut(s)	265
MhlI	GDGCHC	1 cut(s)	1032
MluCI	AATT	7 cut(s)	24, 160, 219, 265, 442, 461, 865
MmeI	TCCRAC	2 cut(s)	108, 531
MroNI	GCCGGC	1 cut(s)	243
MseI	TTAA	1 cut(s)	276
MslI	CAYNNNNRTG	2 cut(s)	290, 623
MspA1I	CMGCKG	2 cut(s)	611, 716
MspI	CCGG	2 cut(s)	244, 392
MunI	CAATTG	1 cut(s)	265
MwoI	GCNNNNNNNGC	1 cut(s)	993
NaeI	GCCGGC	1 cut(s)	245
NdeI	CATATG	1 cut(s)	721
NdeII	GATC	3 cut(s)	7, 70, 1077
NgoMIV	GCCGGC	1 cut(s)	243
NlaIII	CATG	6 cut(s)	197, 323, 593, 670, 802, 965
NlaIV	GGNNCC	1 cut(s)	242
NmeAIII	GCCGAG	1 cut(s)	182
NmuCI	GTSAC	2 cut(s)	92, 505
NspI	RCATGY	1 cut(s)	323
PceI	AGGCCT	1 cut(s)	741
PciI	ACATGT	1 cut(s)	319
PdiI	GCCGGC	1 cut(s)	245
PkrI	GCNGC	2 cut(s)	715, 718
PscI	ACATGT	1 cut(s)	319
PspN4I	GGNNCC	1 cut(s)	242
PspPI	GGNCC	3 cut(s)	81, 205, 246
RsaI	GTAC	2 cut(s)	137, 308
RsaNI	GTAC	2 cut(s)	136, 307
RseI	CAYNNNNRTG	2 cut(s)	290, 623
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	2 cut(s)	714, 717
Sau3AI	GATC	3 cut(s)	7, 70, 1077
Sau96I	GGNCC	3 cut(s)	81, 205, 246
SduI	GDGCHC	1 cut(s)	1032
SfaNI	GCATC	3 cut(s)	700, 762, 910
SfcI	CTRYAG	1 cut(s)	889
SinI	GGWCC	1 cut(s)	81
SmiMI	CAYNNNNRTG	2 cut(s)	290, 623
Sse9I	AATT	7 cut(s)	24, 160, 219, 265, 442, 461, 865
SseBI	AGGCCT	1 cut(s)	741
SsiI	CCGC	4 cut(s)	90, 611, 714, 775
SspMI	CTAG	2 cut(s)	467, 603
StuI	AGGCCT	1 cut(s)	741
TaaI	ACNGT	1 cut(s)	1027
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	1 cut(s)	762
TasI	AATT	7 cut(s)	24, 160, 219, 265, 442, 461, 865
TauI	GCSGC	1 cut(s)	716
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	1 cut(s)	1090
TseFI	GTSAC	2 cut(s)	92, 505
TseI	GCWGC	1 cut(s)	716
Tsp45I	GTSAC	2 cut(s)	92, 505
TspDTI	ATGAA	4 cut(s)	17, 491, 683, 1008
TspRI	CASTG	1 cut(s)	1090
VpaK11BI	GGWCC	1 cut(s)	81
XapI	RAATTY	1 cut(s)	24
XceI	RCATGY	1 cut(s)	323
XmiI	GTMKAC	1 cut(s)	888
XspI	CTAG	2 cut(s)	467, 603
ZraI	GACGTC	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.