Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000204.1

Orthogroup ID

OG0005755

Physical Location & Seq

Genomic Coordinates Forward (+)

33929 .. 34718

Gene Structure 790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000204.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atgcgggatggaggggttagtcttgttgtggctgcatacggagtggtgatctcaggcctctgtaagaatggtcagttaaataaagcaatgcgggtcgttacagatttggccatgtgtggtttttcttcagataagatgttgttgatgaccattatggatgcatgtttcaaagctgggaatttaaaagcagcttcgggtttctacagagaattgttcgccaaggggtttgaaccagatgctgtggcacaccctgcattgttatccattagaaagttgtcttcaaaaggggaagctggctcagagttcgtgcaattgtggaactattggaatgttccatctgcggtcctcgcattggtgtggagcaaggacctccagttctatgtgccttgttctgtgacagggccttcaaggcttttcccgaggcttactactcgagggatgcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

148

Amino Acids

16.09

Weight (kDa)

9.33

Isoelectric Point (pI)

26.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01740
prunus_persica	Prupe.1G333800_v2.0.a1 Prupe.1G333800_v2.0.a1 Prupe.1G333800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0123271 RchiOBHm_Chr4g0442881 RchiOBHm_Chr4g0442961 RchiOBHm_Chr4g0443001
rosa_laevigata	RLG00000005963 RLG00000005969 RLG00000005972 RLG00000005974 RLG00000010013
rosa_multiflora	Rmu_sc0001917.1_g000006 Rmu_sc0005806.1_g000015 Rmu_sc0007295.1_g000001 Rmu_sc0014119.1_g000001 Rmu_ssc0000204.1_g000003 Rmu_ssc0000204.1_g000010
rosa_roxburghii	Rroxscaffold_5G00383640
rosa_samantha	Rh2BG311500 Rh4AG397900 Rh4BG409100 Rh4BG409400 Rh4CG424900 Rh4DG403700 Rh4DG404200
rosa_wichuraiana	Rw4G034270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	4, 91, 341
AcoI	YGGCCR	1 cut(s)	108
AcsI	RAATTY	1 cut(s)	178
AcuI	CTGAAG	1 cut(s)	111
AfiI	CCNNNNNNNGG	1 cut(s)	352
AgsI	TTSAA	4 cut(s)	169, 230, 282, 408
AloI	GAACNNNNNNTCC	2 cut(s)	359, 391
AluBI	AGCT	3 cut(s)	173, 191, 293
AluI	AGCT	3 cut(s)	173, 191, 293
AlwNI	CAGNNNCTG	1 cut(s)	239
Ama87I	CYCGRG	2 cut(s)	418, 432
AoxI	GGCC	3 cut(s)	55, 108, 401
ApeKI	GCWGC	2 cut(s)	32, 188
ApoI	RAATTY	1 cut(s)	178
AspS9I	GGNCC	3 cut(s)	343, 367, 401
AsuHPI	GGTGA	1 cut(s)	58
AvaI	CYCGRG	2 cut(s)	418, 432
AvaII	GGWCC	2 cut(s)	343, 367
BalI	TGGCCA	1 cut(s)	110
BbsI	GAAGAC	1 cut(s)	270
BbvI	GCAGC	2 cut(s)	19, 200
BccI	CCATC	2 cut(s)	2, 343
BfmI	CTRYAG	1 cut(s)	202
BglI	GCCNNNNNGGC	1 cut(s)	409
BisI	GCNGC	2 cut(s)	33, 189
BlsI	GCNGC	2 cut(s)	34, 190
Bme18I	GGWCC	2 cut(s)	343, 367
BmeT110I	CYCGRG	2 cut(s)	418, 432
BmgT120I	GGNCC	3 cut(s)	343, 367, 401
BmsI	GCATC	3 cut(s)	148, 226, 429
BpiI	GAAGAC	1 cut(s)	270
BpmI	CTGGAG	1 cut(s)	356
BsaJI	CCNNGG	2 cut(s)	219, 419
Bsc4I	CCNNNNNNNGG	1 cut(s)	352
Bse1I	ACTGG	1 cut(s)	373
Bse3DI	GCAATG	1 cut(s)	93
BseDI	CCNNGG	2 cut(s)	219, 419
BseGI	GGATG	3 cut(s)	13, 163, 444
BseLI	CCNNNNNNNGG	1 cut(s)	352
BseMI	GCAATG	1 cut(s)	93
BseMII	CTCAG	2 cut(s)	66, 312
BseNI	ACTGG	1 cut(s)	373
BseXI	GCAGC	2 cut(s)	19, 200
BseYI	CCCAGC	1 cut(s)	173
BshFI	GGCC	3 cut(s)	57, 110, 403
BsiHKCI	CYCGRG	2 cut(s)	418, 432
BslI	CCNNNNNNNGG	1 cut(s)	352
BsnI	GGCC	3 cut(s)	57, 110, 403
BsoBI	CYCGRG	2 cut(s)	418, 432
Bsp143I	GATC	1 cut(s)	48
BspACI	CCGC	3 cut(s)	4, 91, 341
BspANI	GGCC	3 cut(s)	57, 110, 403
BspCNI	CTCAG	2 cut(s)	65, 311
BsrDI	GCAATG	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	373
BssECI	CCNNGG	2 cut(s)	219, 419
BssMI	GATC	1 cut(s)	48
BssT1I	CCWWGG	1 cut(s)	219
BstAPI	GCANNNNNTGC	1 cut(s)	251
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	2 cut(s)	52, 298
BstF5I	GGATG	3 cut(s)	13, 163, 444
BstKTI	GATC	1 cut(s)	51
BstMBI	GATC	1 cut(s)	48
BstMWI	GCNNNNNNNGC	3 cut(s)	251, 347, 409
BstNSI	RCATGY	1 cut(s)	165
BstSFI	CTRYAG	1 cut(s)	202
BstV1I	GCAGC	2 cut(s)	19, 200
BstV2I	GAAGAC	1 cut(s)	270
BsuRI	GGCC	3 cut(s)	57, 110, 403
BtsCI	GGATG	3 cut(s)	13, 163, 444
Cac8I	GCNNGC	1 cut(s)	295
CaiI	CAGNNNCTG	1 cut(s)	239
Cfr13I	GGNCC	3 cut(s)	343, 367, 401
CviAII	CATG	2 cut(s)	112, 162
DdeI	CTNAG	2 cut(s)	52, 298
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
DraI	TTTAAA	1 cut(s)	183
EaeI	YGGCCR	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	219
Eco147I	AGGCCT	1 cut(s)	57
Eco47I	GGWCC	2 cut(s)	343, 367
Eco57I	CTGAAG	1 cut(s)	111
Eco88I	CYCGRG	2 cut(s)	418, 432
EcoO109I	RGGNCCY	2 cut(s)	367, 401
EcoT14I	CCWWGG	1 cut(s)	219
EcoT22I	ATGCAT	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	2 cut(s)	115, 165
FaiI	YATR	5 cut(s)	37, 113, 155, 163, 381
FatI	CATG	2 cut(s)	111, 161
FauI	CCCGC	1 cut(s)	84
Fnu4HI	GCNGC	2 cut(s)	33, 189
FokI	GGATG	2 cut(s)	20, 170
Fsp4HI	GCNGC	2 cut(s)	33, 189
GluI	GCNGC	2 cut(s)	33, 189
GsaI	CCCAGC	1 cut(s)	177
GsuI	CTGGAG	1 cut(s)	356
HaeIII	GGCC	3 cut(s)	57, 110, 403
Hin1II	CATG	2 cut(s)	115, 165
HphI	GGTGA	1 cut(s)	58
Hpy188I	TCNGA	2 cut(s)	130, 301
Hpy188III	TCNNGA	1 cut(s)	418
HpyAV	CCTTC	1 cut(s)	414
HpyCH4V	TGCA	5 cut(s)	35, 161, 254, 310, 442
HpyF10VI	GCNNNNNNNGC	3 cut(s)	251, 347, 409
HpyF3I	CTNAG	2 cut(s)	52, 298
Hsp92II	CATG	2 cut(s)	115, 165
Kzo9I	GATC	1 cut(s)	48
LmnI	GCTCC	1 cut(s)	360
LpnPI	CCDG	7 cut(s)	39, 159, 246, 264, 279, 384, 386
Lsp1109I	GCAGC	2 cut(s)	19, 200
LweI	GCATC	3 cut(s)	148, 226, 429
MaeIII	GTNAC	2 cut(s)	97, 394
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
MboII	GAAGA	2 cut(s)	117, 270
MfeI	CAATTG	1 cut(s)	311
MlsI	TGGCCA	1 cut(s)	110
MluCI	AATT	3 cut(s)	178, 209, 311
MluNI	TGGCCA	1 cut(s)	110
MnlI	CCTC	6 cut(s)	5, 68, 356, 380, 414, 428
Mox20I	TGGCCA	1 cut(s)	110
Mph1103I	ATGCAT	1 cut(s)	163
MscI	TGGCCA	1 cut(s)	110
MseI	TTAA	2 cut(s)	77, 182
MslI	CAYNNNNRTG	1 cut(s)	355
Msp20I	TGGCCA	1 cut(s)	110
MunI	CAATTG	1 cut(s)	311
MwoI	GCNNNNNNNGC	3 cut(s)	251, 347, 409
NdeII	GATC	1 cut(s)	48
NlaIII	CATG	2 cut(s)	115, 165
NmuCI	GTSAC	1 cut(s)	394
NsiI	ATGCAT	1 cut(s)	163
NspI	RCATGY	1 cut(s)	165
PaeR7I	CTCGAG	1 cut(s)	432
PceI	AGGCCT	1 cut(s)	57
PkrI	GCNGC	2 cut(s)	34, 190
PpuMI	RGGWCCY	1 cut(s)	367
Psp5II	RGGWCCY	1 cut(s)	367
PspFI	CCCAGC	1 cut(s)	173
PspPI	GGNCC	3 cut(s)	343, 367, 401
PspPPI	RGGWCCY	1 cut(s)	367
PspXI	VCTCGAGB	1 cut(s)	432
PstNI	CAGNNNCTG	1 cut(s)	239
RseI	CAYNNNNRTG	1 cut(s)	355
SaqAI	TTAA	2 cut(s)	77, 182
SatI	GCNGC	2 cut(s)	33, 189
Sau3AI	GATC	1 cut(s)	48
Sau96I	GGNCC	3 cut(s)	343, 367, 401
SetI	ASST	4 cut(s)	175, 193, 295, 372
SfaNI	GCATC	3 cut(s)	148, 226, 429
SfcI	CTRYAG	1 cut(s)	202
Sfr274I	CTCGAG	1 cut(s)	432
SinI	GGWCC	2 cut(s)	343, 367
SlaI	CTCGAG	1 cut(s)	432
SmiMI	CAYNNNNRTG	1 cut(s)	355
SmlI	CTYRAG	1 cut(s)	432
SmoI	CTYRAG	1 cut(s)	432
Sse9I	AATT	3 cut(s)	178, 209, 311
SseBI	AGGCCT	1 cut(s)	57
SsiI	CCGC	3 cut(s)	4, 91, 341
StuI	AGGCCT	1 cut(s)	57
StyI	CCWWGG	1 cut(s)	219
TaqI	TCGA	1 cut(s)	433
TasI	AATT	3 cut(s)	178, 209, 311
Tru1I	TTAA	2 cut(s)	77, 182
Tru9I	TTAA	2 cut(s)	77, 182
TseFI	GTSAC	1 cut(s)	394
TseI	GCWGC	2 cut(s)	32, 188
Tsp45I	GTSAC	1 cut(s)	394
TspGWI	ACGGA	1 cut(s)	54
VpaK11BI	GGWCC	2 cut(s)	343, 367
XapI	RAATTY	1 cut(s)	178
XceI	RCATGY	1 cut(s)	165
XhoI	CTCGAG	1 cut(s)	432
Zsp2I	ATGCAT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.