Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014119.1

Orthogroup ID

OG0005755

Physical Location & Seq

Genomic Coordinates Reverse (-)

116 .. 382

Gene Structure 267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014119.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

atgagtaaaatgcgggatggaggggttagtcttgttgtggctgcatacggagtggtgatctcaggcctctgtaagaatggtcagttaaataaagcaatgcgggtcgttacagatttggccatgtgtggtttttcttcagataagatgttgttgatgaccattatggatgcatgtttcaaagctgggaatttaaaagcagcttcgggtttctacagagaattgttcgccaaggggtttgaaccagatgctgtggtgcttcagctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

88

Amino Acids

9.4

Weight (kDa)

8.91

Isoelectric Point (pI)

29.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01740
prunus_persica	Prupe.1G333800_v2.0.a1 Prupe.1G333800_v2.0.a1 Prupe.1G333800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0123271 RchiOBHm_Chr4g0442881 RchiOBHm_Chr4g0442961 RchiOBHm_Chr4g0443001
rosa_laevigata	RLG00000005963 RLG00000005969 RLG00000005972 RLG00000005974 RLG00000010013
rosa_multiflora	Rmu_sc0001917.1_g000006 Rmu_sc0005806.1_g000015 Rmu_sc0007295.1_g000001 Rmu_sc0014119.1_g000001 Rmu_ssc0000204.1_g000003 Rmu_ssc0000204.1_g000010
rosa_roxburghii	Rroxscaffold_5G00383640
rosa_samantha	Rh2BG311500 Rh4AG397900 Rh4BG409100 Rh4BG409400 Rh4CG424900 Rh4DG403700 Rh4DG404200
rosa_wichuraiana	Rw4G034270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	13, 100
AcoI	YGGCCR	1 cut(s)	117
AcsI	RAATTY	1 cut(s)	187
AcuI	CTGAAG	2 cut(s)	120, 242
AgsI	TTSAA	2 cut(s)	178, 239
AluBI	AGCT	3 cut(s)	182, 200, 262
AluI	AGCT	3 cut(s)	182, 200, 262
AlwNI	CAGNNNCTG	1 cut(s)	248
AoxI	GGCC	2 cut(s)	64, 117
ApeKI	GCWGC	2 cut(s)	41, 197
ApoI	RAATTY	1 cut(s)	187
AsuHPI	GGTGA	1 cut(s)	67
BalI	TGGCCA	1 cut(s)	119
BbvI	GCAGC	2 cut(s)	28, 209
BccI	CCATC	1 cut(s)	11
BfmI	CTRYAG	1 cut(s)	211
BisI	GCNGC	2 cut(s)	42, 198
BlsI	GCNGC	2 cut(s)	43, 199
BmsI	GCATC	2 cut(s)	157, 235
BsaJI	CCNNGG	1 cut(s)	228
Bse3DI	GCAATG	1 cut(s)	102
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	2 cut(s)	22, 172
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	1 cut(s)	75
BseXI	GCAGC	2 cut(s)	28, 209
BseYI	CCCAGC	1 cut(s)	182
BshFI	GGCC	2 cut(s)	66, 119
BsnI	GGCC	2 cut(s)	66, 119
Bsp143I	GATC	1 cut(s)	57
BspACI	CCGC	2 cut(s)	13, 100
BspANI	GGCC	2 cut(s)	66, 119
BspCNI	CTCAG	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	1 cut(s)	57
BssT1I	CCWWGG	1 cut(s)	228
BstDEI	CTNAG	1 cut(s)	61
BstF5I	GGATG	2 cut(s)	22, 172
BstKTI	GATC	1 cut(s)	60
BstMBI	GATC	1 cut(s)	57
BstNSI	RCATGY	1 cut(s)	174
BstSFI	CTRYAG	1 cut(s)	211
BstV1I	GCAGC	2 cut(s)	28, 209
BsuRI	GGCC	2 cut(s)	66, 119
BtsCI	GGATG	2 cut(s)	22, 172
CaiI	CAGNNNCTG	1 cut(s)	248
CviAII	CATG	2 cut(s)	121, 171
CviJI	RGCY	6 cut(s)	41, 66, 119, 182, 200, 262
CviKI_1	RGCY	6 cut(s)	41, 66, 119, 182, 200, 262
DdeI	CTNAG	1 cut(s)	61
DpnI	GATC	1 cut(s)	59
DpnII	GATC	1 cut(s)	57
DraI	TTTAAA	1 cut(s)	192
EaeI	YGGCCR	1 cut(s)	117
Eco130I	CCWWGG	1 cut(s)	228
Eco147I	AGGCCT	1 cut(s)	66
Eco57I	CTGAAG	2 cut(s)	120, 242
EcoT14I	CCWWGG	1 cut(s)	228
EcoT22I	ATGCAT	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	2 cut(s)	124, 174
FaiI	YATR	4 cut(s)	46, 122, 164, 172
FatI	CATG	2 cut(s)	120, 170
FauI	CCCGC	2 cut(s)	6, 93
Fnu4HI	GCNGC	2 cut(s)	42, 198
FokI	GGATG	2 cut(s)	29, 179
Fsp4HI	GCNGC	2 cut(s)	42, 198
GluI	GCNGC	2 cut(s)	42, 198
GsaI	CCCAGC	1 cut(s)	186
HaeIII	GGCC	2 cut(s)	66, 119
Hin1II	CATG	2 cut(s)	124, 174
HphI	GGTGA	1 cut(s)	67
Hpy188I	TCNGA	1 cut(s)	139
HpyCH4V	TGCA	2 cut(s)	44, 170
HpyF3I	CTNAG	1 cut(s)	61
Hsp92II	CATG	2 cut(s)	124, 174
Kzo9I	GATC	1 cut(s)	57
LpnPI	CCDG	3 cut(s)	48, 168, 255
Lsp1109I	GCAGC	2 cut(s)	28, 209
LweI	GCATC	2 cut(s)	157, 235
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	1 cut(s)	59
MboI	GATC	1 cut(s)	57
MboII	GAAGA	1 cut(s)	126
MlsI	TGGCCA	1 cut(s)	119
MluCI	AATT	2 cut(s)	187, 218
MluNI	TGGCCA	1 cut(s)	119
MnlI	CCTC	2 cut(s)	14, 77
Mox20I	TGGCCA	1 cut(s)	119
Mph1103I	ATGCAT	1 cut(s)	172
MscI	TGGCCA	1 cut(s)	119
MseI	TTAA	2 cut(s)	86, 191
Msp20I	TGGCCA	1 cut(s)	119
NdeII	GATC	1 cut(s)	57
NlaIII	CATG	2 cut(s)	124, 174
NsiI	ATGCAT	1 cut(s)	172
NspI	RCATGY	1 cut(s)	174
PceI	AGGCCT	1 cut(s)	66
PkrI	GCNGC	2 cut(s)	43, 199
PspFI	CCCAGC	1 cut(s)	182
PstNI	CAGNNNCTG	1 cut(s)	248
SaqAI	TTAA	2 cut(s)	86, 191
SatI	GCNGC	2 cut(s)	42, 198
Sau3AI	GATC	1 cut(s)	57
SetI	ASST	3 cut(s)	184, 202, 264
SfaNI	GCATC	2 cut(s)	157, 235
SfcI	CTRYAG	1 cut(s)	211
Sse9I	AATT	2 cut(s)	187, 218
SseBI	AGGCCT	1 cut(s)	66
SsiI	CCGC	2 cut(s)	13, 100
StuI	AGGCCT	1 cut(s)	66
StyI	CCWWGG	1 cut(s)	228
TasI	AATT	2 cut(s)	187, 218
Tru1I	TTAA	2 cut(s)	86, 191
Tru9I	TTAA	2 cut(s)	86, 191
TseI	GCWGC	2 cut(s)	41, 197
TspGWI	ACGGA	1 cut(s)	63
XapI	RAATTY	1 cut(s)	187
XceI	RCATGY	1 cut(s)	174
Zsp2I	ATGCAT	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.