Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0005755

Physical Location & Seq

Genomic Coordinates Forward (+)

3217187 .. 3217675

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005974

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGAGTAAAATGCGGGATGGAGGGGTTAGTCTTGTTGTGGCTGCATACGGAGTGATCTCAGGCCTCTGTAAGAATGGTCAGTTAGATAAAGCAATGCGGGTTGTTACAGATTTGGCCATGTGTGGTTTTTCTTCAGATAAGATGTTGTTGATGACCATTATGGATGCATGTTTCAAAGCTGGGAATTTGAAAGCAGCTTCGGGTTTCTACAGAGAATTGTTAGCCAAGGGTTTTGAACCAGATGCTGTGGTGCTTTCAGCTTTGATGGATGGCTTATGCAAGCATGGGCATTTGGAGGAGGCAAGAGGCTACTTTTGCAAGAGAAAGGCTAATGAATTTCATATACTGTGCTCATTGATGGGATGTGTAAGGAAGCAAACTTTAGTGGAGTTGAGGCGATCTTCAGTGAGATGTCCGAGATGGGGTTTATTCCAGACAAATATGTATACACTTCTTGGATTGCTGGGCTATGCAGACAGGGTAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

163

Amino Acids

17.87

Weight (kDa)

9.19

Isoelectric Point (pI)

35.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	52 - 94	3e-08	PPR repeat family
PPR_1	PF12854	76 - 101	1.4e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01740
prunus_persica	Prupe.1G333800_v2.0.a1 Prupe.1G333800_v2.0.a1 Prupe.1G333800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0123271 RchiOBHm_Chr4g0442881 RchiOBHm_Chr4g0442961 RchiOBHm_Chr4g0443001
rosa_laevigata	RLG00000005963 RLG00000005969 RLG00000005972 RLG00000005974 RLG00000010013
rosa_multiflora	Rmu_sc0001917.1_g000006 Rmu_sc0005806.1_g000015 Rmu_sc0007295.1_g000001 Rmu_sc0014119.1_g000001 Rmu_ssc0000204.1_g000003 Rmu_ssc0000204.1_g000010
rosa_roxburghii	Rroxscaffold_5G00383640
rosa_samantha	Rh2BG311500 Rh4AG397900 Rh4BG409100 Rh4BG409400 Rh4CG424900 Rh4DG403700 Rh4DG404200
rosa_wichuraiana	Rw4G034270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	446
AciI	CCGC	2 cut(s)	13, 97
AcoI	YGGCCR	1 cut(s)	114
AcsI	RAATTY	2 cut(s)	184, 335
AcuI	CTGAAG	2 cut(s)	117, 387
AfiI	CCNNNNNNNGG	1 cut(s)	422
AgsI	TTSAA	3 cut(s)	175, 190, 236
AluBI	AGCT	3 cut(s)	179, 197, 260
AluI	AGCT	3 cut(s)	179, 197, 260
Alw21I	GWGCWC	1 cut(s)	353
AlwNI	CAGNNNCTG	1 cut(s)	245
AoxI	GGCC	2 cut(s)	61, 114
ApeKI	GCWGC	2 cut(s)	41, 194
ApoI	RAATTY	2 cut(s)	184, 335
BalI	TGGCCA	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	353
BbvI	GCAGC	2 cut(s)	28, 206
BccI	CCATC	5 cut(s)	11, 259, 263, 352, 414
BfaI	CTAG	1 cut(s)	487
BfmI	CTRYAG	1 cut(s)	208
BisI	GCNGC	2 cut(s)	42, 195
BlsI	GCNGC	2 cut(s)	43, 196
BmsI	GCATC	2 cut(s)	154, 232
BsaJI	CCNNGG	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	1 cut(s)	422
Bse3DI	GCAATG	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	4 cut(s)	22, 169, 274, 368
BseLI	CCNNNNNNNGG	1 cut(s)	422
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	1 cut(s)	72
BseRI	GAGGAG	1 cut(s)	311
BseXI	GCAGC	2 cut(s)	28, 206
BseYI	CCCAGC	2 cut(s)	179, 463
BshFI	GGCC	2 cut(s)	63, 116
BsiHKAI	GWGCWC	1 cut(s)	353
BslI	CCNNNNNNNGG	1 cut(s)	422
BsnI	GGCC	2 cut(s)	63, 116
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp143I	GATC	2 cut(s)	54, 398
BspACI	CCGC	2 cut(s)	13, 97
BspANI	GGCC	2 cut(s)	63, 116
BspCNI	CTCAG	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	2 cut(s)	54, 398
BssNAI	GTATAC	1 cut(s)	447
BssT1I	CCWWGG	1 cut(s)	225
Bst1107I	GTATAC	1 cut(s)	447
Bst4CI	ACNGT	1 cut(s)	348
BstC8I	GCNNGC	1 cut(s)	281
BstDEI	CTNAG	1 cut(s)	58
BstF5I	GGATG	4 cut(s)	22, 169, 274, 368
BstKTI	GATC	2 cut(s)	57, 401
BstMBI	GATC	2 cut(s)	54, 398
BstMWI	GCNNNNNNNGC	1 cut(s)	315
BstNSI	RCATGY	1 cut(s)	171
BstSFI	CTRYAG	1 cut(s)	208
BstV1I	GCAGC	2 cut(s)	28, 206
BstZ17I	GTATAC	1 cut(s)	447
BsuRI	GGCC	2 cut(s)	63, 116
BtsCI	GGATG	4 cut(s)	22, 169, 274, 368
BtsIMutI	CAGTG	1 cut(s)	411
Cac8I	GCNNGC	1 cut(s)	281
CaiI	CAGNNNCTG	1 cut(s)	245
CviAII	CATG	3 cut(s)	118, 168, 284
DdeI	CTNAG	1 cut(s)	58
DpnI	GATC	2 cut(s)	56, 400
DpnII	GATC	2 cut(s)	54, 398
EaeI	YGGCCR	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	225
Eco147I	AGGCCT	1 cut(s)	63
Eco57I	CTGAAG	2 cut(s)	117, 387
EcoT14I	CCWWGG	1 cut(s)	225
EcoT22I	ATGCAT	1 cut(s)	169
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	3 cut(s)	121, 171, 287
FatI	CATG	3 cut(s)	117, 167, 283
FauI	CCCGC	2 cut(s)	6, 90
FblI	GTMKAC	1 cut(s)	446
Fnu4HI	GCNGC	2 cut(s)	42, 195
FokI	GGATG	4 cut(s)	29, 176, 281, 375
Fsp4HI	GCNGC	2 cut(s)	42, 195
FspBI	CTAG	1 cut(s)	487
GluI	GCNGC	2 cut(s)	42, 195
GsaI	CCCAGC	2 cut(s)	183, 467
HaeIII	GGCC	2 cut(s)	63, 116
Hin1II	CATG	3 cut(s)	121, 171, 287
Hpy166II	GTNNAC	1 cut(s)	447
Hpy188I	TCNGA	2 cut(s)	136, 417
Hpy188III	TCNNGA	1 cut(s)	433
Hpy8I	GTNNAC	1 cut(s)	447
HpyCH4III	ACNGT	1 cut(s)	348
HpyCH4V	TGCA	5 cut(s)	44, 167, 279, 318, 473
HpyF10VI	GCNNNNNNNGC	1 cut(s)	315
HpyF3I	CTNAG	1 cut(s)	58
Hsp92II	CATG	3 cut(s)	121, 171, 287
Kzo9I	GATC	2 cut(s)	54, 398
LpnPI	CCDG	6 cut(s)	45, 165, 252, 446, 449, 463
Lsp1109I	GCAGC	2 cut(s)	28, 206
LweI	GCATC	2 cut(s)	154, 232
MaeI	CTAG	1 cut(s)	487
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	2 cut(s)	56, 400
MboI	GATC	2 cut(s)	54, 398
MboII	GAAGA	2 cut(s)	123, 393
MhlI	GDGCHC	1 cut(s)	353
MlsI	TGGCCA	1 cut(s)	116
MluCI	AATT	3 cut(s)	184, 215, 335
MluNI	TGGCCA	1 cut(s)	116
MnlI	CCTC	6 cut(s)	14, 74, 289, 292, 299, 387
Mox20I	TGGCCA	1 cut(s)	116
Mph1103I	ATGCAT	1 cut(s)	169
MscI	TGGCCA	1 cut(s)	116
Msp20I	TGGCCA	1 cut(s)	116
MwoI	GCNNNNNNNGC	1 cut(s)	315
NdeII	GATC	2 cut(s)	54, 398
NlaIII	CATG	3 cut(s)	121, 171, 287
NsiI	ATGCAT	1 cut(s)	169
NspI	RCATGY	1 cut(s)	171
PceI	AGGCCT	1 cut(s)	63
PkrI	GCNGC	2 cut(s)	43, 196
PspFI	CCCAGC	2 cut(s)	179, 463
PstNI	CAGNNNCTG	1 cut(s)	245
SatI	GCNGC	2 cut(s)	42, 195
Sau3AI	GATC	2 cut(s)	54, 398
SduI	GDGCHC	1 cut(s)	353
SetI	ASST	3 cut(s)	181, 199, 262
SfaNI	GCATC	2 cut(s)	154, 232
SfcI	CTRYAG	1 cut(s)	208
Sse9I	AATT	3 cut(s)	184, 215, 335
SseBI	AGGCCT	1 cut(s)	63
SsiI	CCGC	2 cut(s)	13, 97
SspMI	CTAG	1 cut(s)	487
StuI	AGGCCT	1 cut(s)	63
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	348
TasI	AATT	3 cut(s)	184, 215, 335
TscAI	CASTG	1 cut(s)	411
TseI	GCWGC	2 cut(s)	41, 194
TspDTI	ATGAA	2 cut(s)	329, 348
TspGWI	ACGGA	1 cut(s)	63
TspRI	CASTG	1 cut(s)	411
XapI	RAATTY	2 cut(s)	184, 335
XceI	RCATGY	1 cut(s)	171
XmiI	GTMKAC	1 cut(s)	446
XspI	CTAG	1 cut(s)	487
Zsp2I	ATGCAT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.