Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002925

Physical Location & Seq

Genomic Coordinates Reverse (-)

35920957 .. 35923608

Gene Structure 2652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G411500.11

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGTGTGGATGGCAACTCAAAAGCTTGCAATTAGAGGGAAGAGAAGGCGTATATGGGGAGGAGCGTTTCTGTGTTGGGTTTTCTTAATGTTGGTCACTCCCAAGATTTCTCACTCCCCCAAACACCATCTCTACGCTGACATGCGCAATTTCCTTGGAGTGCCTAATACATTGAATGTGATCACCAATTTCCCCTTTTTGGTTGTTGGTGTTCTGGGTTTTGTTCTTTGTTGCCAAGGGGGCCTTTTCAACATCAGGTTCTGTACTTCTGCATTTTTGCCTGGTGAAGTTTGGGGTTGGGCACTATTCTATGCTGGAATAGCAGGGCTGGCTTTTGGGTCTGCTTATTATCATTTGAAGCCCGATGATAGTAGAGTAACGTGGGACACCTTGCCGATGATGATTGCATACTCCTCTCTTTTCTCTAGTTTTATTGTGGAGAGAGTGGGAGAGAGGATCGGTTTAAGTAGTCTATTTGCACTCCTTTTCATTGCTTTTCTTAGTACTGCATATGACAGAACATATAATGATATCAGATTGTACATGATGTTCCAGTTGATTCCATGTATAGCAATTCCAGGGATGTGCTTTGTGTTTCCACCCAAATATACTCACTCAAGATATTGGCTTTGGGCCGGAGGGGTTTACCTTCTCTCCAAATTTGAAGCTGTTGCTGACATGAAAATTTACCATGCAAATCATTACATTATCAGTGGGCACTCTTTGGAGCATTTGTGTTTAGTGATGGTCCCTGTTCTGCTCAGTATTATGCTCATGCATAGAAACATTAAGTGTCAAAGAATAGGTGCCATTAAAGAATGCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ceramidase

Protein Analysis

276

Amino Acids

31.35

Weight (kDa)

9.31

Isoelectric Point (pI)

34.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11870 AT5G11870
fragaria_vesca	FvH4_2g31810 FvH4_2g31810 FvH4_2g31810 FvH4_2g31810 FvH4_2g31810 FvH4_2g31810 FvH4_2g31810 FvH4_2g31810 FvH4_2g31810
malus_domestica	MD08G1062700.v1.1 MD15G1059000.v1.1
prunus_persica	Prupe.1G411500_v2.0.a1 Prupe.1G411500_v2.0.a1 Prupe.1G411500_v2.0.a1 Prupe.1G411500_v2.0.a1 Prupe.1G411500_v2.0.a1 Prupe.1G411500_v2.0.a1 Prupe.1G411500_v2.0.a1 Prupe.1G411500_v2.0.a1 Prupe.1G411500_v2.0.a1 Prupe.1G411500_v2.0.a1 Prupe.1G411500_v2.0.a1 Prupe.1G411500_v2.0.a1 Prupe.1G411500_v2.0.a1
pyrus_communis	pycom15g05540
rosa_chinensis	RchiOBHm_Chr6g0311011
rosa_laevigata	RLG00000010443
rosa_multiflora	Rmu_sc0012235.1_g000007
rosa_roxburghii	Rroxscaffold_7G00158110
rosa_rugosa	Rorug06G0384800 Rorug06G0384800 Rorug06G0384800
rosa_samantha	Rh6BG509000 Rh6CG514900 Rh6DG501500
rosa_wichuraiana	Rw6G043410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	146
AccB1I	GGYRCC	1 cut(s)	806
AclWI	GGATC	1 cut(s)	464
AcsI	RAATTY	2 cut(s)	659, 684
AfaI	GTAC	3 cut(s)	265, 505, 542
AfiI	CCNNNNNNNGG	1 cut(s)	199
AgsI	TTSAA	4 cut(s)	175, 250, 358, 665
AjnI	CCWGG	2 cut(s)	280, 577
AluBI	AGCT	2 cut(s)	25, 668
AluI	AGCT	2 cut(s)	25, 668
AlwI	GGATC	1 cut(s)	464
AlwNI	CAGNNNCTG	1 cut(s)	261
AoxI	GGCC	2 cut(s)	241, 633
ApoI	RAATTY	2 cut(s)	659, 684
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	3 cut(s)	241, 633, 748
AsuHPI	GGTGA	2 cut(s)	175, 296
AvaII	GGWCC	1 cut(s)	748
BaeGI	GKGCMC	2 cut(s)	304, 720
BanI	GGYRCC	1 cut(s)	806
BccI	CCATC	3 cut(s)	4, 135, 739
BciT130I	CCWGG	2 cut(s)	282, 579
BclI	TGATCA	1 cut(s)	180
BfaI	CTAG	1 cut(s)	426
BglI	GCCNNNNNGGC	1 cut(s)	240
BmcAI	AGTACT	1 cut(s)	505
Bme1390I	CCNGG	2 cut(s)	282, 579
Bme18I	GGWCC	1 cut(s)	748
BmgT120I	GGNCC	3 cut(s)	241, 633, 748
BmiI	GGNNCC	3 cut(s)	242, 750, 808
BmrFI	CCNGG	2 cut(s)	282, 579
BpuEI	CTTGAG	1 cut(s)	601
BsaJI	CCNNGG	3 cut(s)	154, 235, 578
BsaXI	ACNNNNNCTCC	4 cut(s)	638, 668, 719, 749
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse1I	ACTGG	1 cut(s)	553
Bse3DI	GCAATG	1 cut(s)	489
BseBI	CCWGG	2 cut(s)	282, 579
BseDI	CCNNGG	3 cut(s)	154, 235, 578
BseGI	GGATG	2 cut(s)	15, 588
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseMI	GCAATG	1 cut(s)	489
BseMII	CTCAG	1 cut(s)	775
BseNI	ACTGG	1 cut(s)	553
BseRI	GAGGAG	2 cut(s)	75, 403
BseSI	GKGCMC	2 cut(s)	304, 720
BshFI	GGCC	2 cut(s)	243, 635
BshNI	GGYRCC	1 cut(s)	806
BsiSI	CCGG	1 cut(s)	636
BslFI	GGGAC	2 cut(s)	398, 734
BslI	CCNNNNNNNGG	1 cut(s)	199
BsmFI	GGGAC	2 cut(s)	398, 734
BsmI	GAATGC	1 cut(s)	824
BsnI	GGCC	2 cut(s)	243, 635
Bsp1286I	GDGCHC	2 cut(s)	304, 720
Bsp1407I	TGTACA	1 cut(s)	540
Bsp143I	GATC	2 cut(s)	180, 456
BspANI	GGCC	2 cut(s)	243, 635
BspCNI	CTCAG	1 cut(s)	774
BspHI	TCATGA	1 cut(s)	824
BspLI	GGNNCC	3 cut(s)	242, 750, 808
BspPI	GGATC	1 cut(s)	464
BspT107I	GGYRCC	1 cut(s)	806
BsrDI	GCAATG	1 cut(s)	489
BsrGI	TGTACA	1 cut(s)	540
BsrI	ACTGG	1 cut(s)	553
BssECI	CCNNGG	3 cut(s)	154, 235, 578
BssMI	GATC	2 cut(s)	180, 456
BssT1I	CCWWGG	2 cut(s)	154, 235
Bst2UI	CCWGG	2 cut(s)	282, 579
Bst6I	CTCTTC	1 cut(s)	35
BstAUI	TGTACA	1 cut(s)	540
BstC8I	GCNNGC	2 cut(s)	27, 330
BstDEI	CTNAG	2 cut(s)	500, 761
BstF5I	GGATG	2 cut(s)	15, 588
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	2 cut(s)	183, 459
BstMBI	GATC	2 cut(s)	180, 456
BstMWI	GCNNNNNNNGC	3 cut(s)	240, 320, 329
BstNI	CCWGG	2 cut(s)	282, 579
BstNSI	RCATGY	1 cut(s)	145
BstSCI	CCNGG	2 cut(s)	280, 577
BstSLI	GKGCMC	2 cut(s)	304, 720
BsuRI	GGCC	2 cut(s)	243, 635
BtsCI	GGATG	2 cut(s)	15, 588
BtsIMutI	CAGTG	1 cut(s)	718
Cac8I	GCNNGC	2 cut(s)	27, 330
CaiI	CAGNNNCTG	1 cut(s)	261
CciI	TCATGA	1 cut(s)	824
CfoI	GCGC	1 cut(s)	147
Cfr13I	GGNCC	3 cut(s)	241, 633, 748
Csp6I	GTAC	3 cut(s)	264, 504, 541
CviAII	CATG	7 cut(s)	142, 544, 564, 679, 692, 775, 825
CviJI	RGCY	8 cut(s)	25, 243, 328, 332, 361, 628, 635, 668
CviKI_1	RGCY	8 cut(s)	25, 243, 328, 332, 361, 628, 635, 668
CviQI	GTAC	3 cut(s)	264, 504, 541
DdeI	CTNAG	2 cut(s)	500, 761
DpnI	GATC	2 cut(s)	182, 458
DpnII	GATC	2 cut(s)	180, 456
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Eco130I	CCWWGG	2 cut(s)	154, 235
Eco32I	GATATC	1 cut(s)	532
Eco47I	GGWCC	1 cut(s)	748
EcoO109I	RGGNCCY	1 cut(s)	241
EcoRII	CCWGG	2 cut(s)	280, 577
EcoRV	GATATC	1 cut(s)	532
EcoT14I	CCWWGG	2 cut(s)	154, 235
EcoT22I	ATGCAT	1 cut(s)	780
ErhI	CCWWGG	2 cut(s)	154, 235
FaeI	CATG	7 cut(s)	145, 547, 567, 682, 695, 778, 828
FalI	AAGNNNNNCTT	2 cut(s)	228, 260
FaqI	GGGAC	2 cut(s)	398, 734
FatI	CATG	7 cut(s)	141, 543, 563, 678, 691, 774, 824
FauNDI	CATATG	1 cut(s)	511
FbaI	TGATCA	1 cut(s)	180
FokI	GGATG	2 cut(s)	22, 595
FspBI	CTAG	1 cut(s)	426
FspI	TGCGCA	1 cut(s)	146
GlaI	GCGC	1 cut(s)	146
HaeIII	GGCC	2 cut(s)	243, 635
HapII	CCGG	1 cut(s)	636
HhaI	GCGC	1 cut(s)	147
Hin1II	CATG	7 cut(s)	145, 547, 567, 682, 695, 778, 828
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	1 cut(s)	559
HpaII	CCGG	1 cut(s)	636
HphI	GGTGA	2 cut(s)	175, 296
Hpy166II	GTNNAC	1 cut(s)	646
Hpy188I	TCNGA	1 cut(s)	536
Hpy188III	TCNNGA	2 cut(s)	618, 825
Hpy8I	GTNNAC	1 cut(s)	646
HpyAV	CCTTC	2 cut(s)	39, 659
HpyCH4IV	ACGT	1 cut(s)	380
HpyCH4V	TGCA	7 cut(s)	29, 272, 407, 479, 509, 695, 778
HpyF10VI	GCNNNNNNNGC	3 cut(s)	240, 320, 329
HpyF3I	CTNAG	2 cut(s)	500, 761
HpySE526I	ACGT	1 cut(s)	380
Hsp92II	CATG	7 cut(s)	145, 547, 567, 682, 695, 778, 828
HspAI	GCGC	1 cut(s)	145
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	2 cut(s)	180, 456
LmnI	GCTCC	2 cut(s)	62, 727
MaeI	CTAG	1 cut(s)	426
MaeII	ACGT	1 cut(s)	380
MaeIII	GTNAC	2 cut(s)	94, 376
MalI	GATC	2 cut(s)	182, 458
MboI	GATC	2 cut(s)	180, 456
MboII	GAAGA	1 cut(s)	52
MhlI	GDGCHC	2 cut(s)	304, 720
MluCI	AATT	6 cut(s)	30, 148, 187, 573, 659, 684
MnlI	CCTC	5 cut(s)	29, 53, 424, 447, 632
Mph1103I	ATGCAT	1 cut(s)	780
MseI	TTAA	4 cut(s)	86, 464, 789, 813
MspI	CCGG	1 cut(s)	636
MspR9I	CCNGG	2 cut(s)	282, 579
Mva1269I	GAATGC	1 cut(s)	824
MvaI	CCWGG	2 cut(s)	282, 579
MwoI	GCNNNNNNNGC	3 cut(s)	240, 320, 329
NdeI	CATATG	1 cut(s)	511
NdeII	GATC	2 cut(s)	180, 456
NlaIII	CATG	7 cut(s)	145, 547, 567, 682, 695, 778, 828
NlaIV	GGNNCC	3 cut(s)	242, 750, 808
NmuCI	GTSAC	1 cut(s)	94
NsbI	TGCGCA	1 cut(s)	146
NsiI	ATGCAT	1 cut(s)	780
NspI	RCATGY	1 cut(s)	145
PagI	TCATGA	1 cut(s)	824
PctI	GAATGC	1 cut(s)	824
PfeI	GAWTC	1 cut(s)	559
Psp6I	CCWGG	2 cut(s)	280, 577
PspGI	CCWGG	2 cut(s)	280, 577
PspN4I	GGNNCC	3 cut(s)	242, 750, 808
PspPI	GGNCC	3 cut(s)	241, 633, 748
PsrI	GAACNNNNNNTAC	2 cut(s)	533, 565
PstNI	CAGNNNCTG	1 cut(s)	261
RsaI	GTAC	3 cut(s)	265, 505, 542
RsaNI	GTAC	3 cut(s)	264, 504, 541
SaqAI	TTAA	4 cut(s)	86, 464, 789, 813
Sau3AI	GATC	2 cut(s)	180, 456
Sau96I	GGNCC	3 cut(s)	241, 633, 748
ScaI	AGTACT	1 cut(s)	505
ScrFI	CCNGG	2 cut(s)	282, 579
SduI	GDGCHC	2 cut(s)	304, 720
SetI	ASST	7 cut(s)	27, 260, 383, 392, 651, 670, 808
SinI	GGWCC	1 cut(s)	748
SmlI	CTYRAG	1 cut(s)	616
SmoI	CTYRAG	1 cut(s)	616
Sse9I	AATT	6 cut(s)	30, 148, 187, 573, 659, 684
SspMI	CTAG	1 cut(s)	426
StyD4I	CCNGG	2 cut(s)	280, 577
StyI	CCWWGG	2 cut(s)	154, 235
TaiI	ACGT	1 cut(s)	383
TasI	AATT	6 cut(s)	30, 148, 187, 573, 659, 684
TatI	WGTACW	3 cut(s)	263, 503, 540
TfiI	GAWTC	1 cut(s)	559
Tru1I	TTAA	4 cut(s)	86, 464, 789, 813
Tru9I	TTAA	4 cut(s)	86, 464, 789, 813
TscAI	CASTG	1 cut(s)	718
TseFI	GTSAC	1 cut(s)	94
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	2 cut(s)	478, 695
TspRI	CASTG	1 cut(s)	718
VpaK11BI	GGWCC	1 cut(s)	748
XapI	RAATTY	2 cut(s)	659, 684
XceI	RCATGY	1 cut(s)	145
XspI	CTAG	1 cut(s)	426
ZrmI	AGTACT	1 cut(s)	505
Zsp2I	ATGCAT	1 cut(s)	780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.