Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002925

Physical Location & Seq

Genomic Coordinates Reverse (-)

3299394 .. 3301400

Gene Structure 2007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g05540.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGTGTGGATGGCAACTCAGCAGCTTGCAATCAGAGGGAAGAGACGGCGGATATGGGGAGGGGCGCTTCTGTGTTGGGTTTTGTTAATGCTGGTCACTCCCAAGATTTCTCACTCTCCCAAACACCATCTCTACGCTGACATGCGCAATTTTGTGGGAGTGCCTAATACCTTGAATGTGATCACAAATTTCCCATTTTTGGTTGTTGGCGTTCTGGGTTTTGTGCTCTGCGTGCAAGGGGGGCTTTTTAACATCAGTTTGCCGGGTGAGGTTTGGGGTTGGGCACTGTTCTATGCTGGAATGGCAGGGCTGGCATTTGGGTCTGCTTATTATCATTTGAAGCCTGATGATAGTAGACTAACTTGGGACACCTTGCCGATGATGATTGCATACTCCTCTCTTTTCTCTAGTTTTATGGTGGAGAGAGTAGGAGAGCGGATCGGTTTGAGCTGTCTGTTTGCACTCCTTTTCATTGCTTTTCTTAGCATTGCATATGACAGAACGTATAATGATATCAGGTTGTACATGATGTTCCAGTTGATTCCATGTATGGTAATTCCAGCAATGTCATTTGTGTTCCCACCTAAATATACTCACTCAAGATATTGGCTCTGGGCCGCTGGGGTTTACCTTCTCGCCAAATTTGAATCAGTTGCCGATGGCAAAATCTACCATGCAAATCGTTTCATTATCAGTGGACACTCGTTGGAGCATTTGTGTTTAGTGATGGTCCCTGTTCTGCTCAGTATCATGCTCATGAATAGAAACATTAAATGTCAAAGAATAGGCGCCTTTAAAGAATGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ceramidase

Protein Analysis

270

Amino Acids

30.62

Weight (kDa)

9.38

Isoelectric Point (pI)

37.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002925)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11870 AT5G11870
fragaria_vesca	FvH4_2g31810 FvH4_2g31810 FvH4_2g31810 FvH4_2g31810 FvH4_2g31810 FvH4_2g31810 FvH4_2g31810 FvH4_2g31810 FvH4_2g31810
malus_domestica	MD08G1062700.v1.1 MD15G1059000.v1.1
prunus_persica	Prupe.1G411500_v2.0.a1 Prupe.1G411500_v2.0.a1 Prupe.1G411500_v2.0.a1 Prupe.1G411500_v2.0.a1 Prupe.1G411500_v2.0.a1 Prupe.1G411500_v2.0.a1 Prupe.1G411500_v2.0.a1 Prupe.1G411500_v2.0.a1 Prupe.1G411500_v2.0.a1 Prupe.1G411500_v2.0.a1 Prupe.1G411500_v2.0.a1 Prupe.1G411500_v2.0.a1 Prupe.1G411500_v2.0.a1
pyrus_communis	pycom15g05540
rosa_chinensis	RchiOBHm_Chr6g0311011
rosa_laevigata	RLG00000010443
rosa_multiflora	Rmu_sc0012235.1_g000007
rosa_roxburghii	Rroxscaffold_7G00158110
rosa_rugosa	Rorug06G0384800 Rorug06G0384800 Rorug06G0384800
rosa_samantha	Rh6BG509000 Rh6CG514900 Rh6DG501500
rosa_wichuraiana	Rw6G043410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	146
AccB1I	GGYRCC	1 cut(s)	788
AccBSI	CCGCTC	1 cut(s)	436
AccI	GTMKAC	1 cut(s)	355
AciI	CCGC	3 cut(s)	49, 436, 618
AclWI	GGATC	1 cut(s)	446
AcsI	RAATTY	2 cut(s)	187, 641
AcyI	GRCGYC	1 cut(s)	789
AfaI	GTAC	1 cut(s)	524
AfiI	CCNNNNNNNGG	1 cut(s)	199
AgsI	TTSAA	3 cut(s)	175, 340, 647
AluBI	AGCT	2 cut(s)	25, 450
AluI	AGCT	2 cut(s)	25, 450
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	37
AlwI	GGATC	1 cut(s)	446
AoxI	GGCC	1 cut(s)	615
ApeKI	GCWGC	1 cut(s)	22
ApoI	RAATTY	2 cut(s)	187, 641
AspLEI	GCGC	3 cut(s)	67, 147, 791
AspS9I	GGNCC	2 cut(s)	615, 730
AsuC2I	CCSGG	1 cut(s)	264
AsuHPI	GGTGA	1 cut(s)	278
AvaII	GGWCC	1 cut(s)	730
BaeGI	GKGCMC	1 cut(s)	286
BanI	GGYRCC	1 cut(s)	788
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	4 cut(s)	4, 135, 653, 721
BceAI	ACGGC	1 cut(s)	62
BclI	TGATCA	1 cut(s)	180
BcnI	CCSGG	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	37
BfaI	CTAG	1 cut(s)	408
BfoI	RGCGCY	2 cut(s)	68, 792
BisI	GCNGC	2 cut(s)	23, 618
BlsI	GCNGC	2 cut(s)	24, 619
Bme1390I	CCNGG	1 cut(s)	264
Bme18I	GGWCC	1 cut(s)	730
BmgT120I	GGNCC	2 cut(s)	615, 730
BmiI	GGNNCC	2 cut(s)	732, 790
BmrFI	CCNGG	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	583
BpuMI	CCSGG	1 cut(s)	264
BsaHI	GRCGYC	1 cut(s)	789
BsaXI	ACNNNNNCTCC	2 cut(s)	701, 731
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse1I	ACTGG	1 cut(s)	535
Bse3DI	GCAATG	3 cut(s)	471, 486, 570
BseGI	GGATG	1 cut(s)	15
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseMI	GCAATG	3 cut(s)	471, 486, 570
BseMII	CTCAG	2 cut(s)	32, 757
BseNI	ACTGG	1 cut(s)	535
BseRI	GAGGAG	1 cut(s)	385
BseSI	GKGCMC	1 cut(s)	286
BseXI	GCAGC	1 cut(s)	34
BseYI	CCCAGC	1 cut(s)	620
BshFI	GGCC	1 cut(s)	617
BshNI	GGYRCC	1 cut(s)	788
BsiHKAI	GWGCWC	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	263
BslFI	GGGAC	2 cut(s)	380, 716
BslI	CCNNNNNNNGG	1 cut(s)	199
BsmAI	GTCTC	1 cut(s)	37
BsmBI	CGTCTC	1 cut(s)	37
BsmFI	GGGAC	2 cut(s)	380, 716
BsnI	GGCC	1 cut(s)	617
Bsp1286I	GDGCHC	2 cut(s)	228, 286
Bsp1407I	TGTACA	1 cut(s)	522
Bsp143I	GATC	2 cut(s)	180, 438
BspACI	CCGC	3 cut(s)	49, 436, 618
BspANI	GGCC	1 cut(s)	617
BspCNI	CTCAG	2 cut(s)	31, 756
BspHI	TCATGA	2 cut(s)	756, 806
BspLI	GGNNCC	2 cut(s)	732, 790
BspPI	GGATC	1 cut(s)	446
BspT107I	GGYRCC	1 cut(s)	788
BsrBI	CCGCTC	1 cut(s)	436
BsrDI	GCAATG	3 cut(s)	471, 486, 570
BsrGI	TGTACA	1 cut(s)	522
BsrI	ACTGG	1 cut(s)	535
BssMI	GATC	2 cut(s)	180, 438
BssNI	GRCGYC	1 cut(s)	789
Bst4CI	ACNGT	1 cut(s)	288
Bst6I	CTCTTC	1 cut(s)	35
BstACI	GRCGYC	1 cut(s)	789
BstAUI	TGTACA	1 cut(s)	522
BstC8I	GCNNGC	3 cut(s)	27, 233, 312
BstDEI	CTNAG	3 cut(s)	18, 482, 743
BstF5I	GGATG	1 cut(s)	15
BstH2I	RGCGCY	2 cut(s)	68, 792
BstHHI	GCGC	3 cut(s)	67, 147, 791
BstKTI	GATC	2 cut(s)	183, 441
BstMAI	GTCTC	1 cut(s)	37
BstMBI	GATC	2 cut(s)	180, 438
BstMWI	GCNNNNNNNGC	4 cut(s)	232, 241, 302, 311
BstNSI	RCATGY	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	262
BstSLI	GKGCMC	1 cut(s)	286
BstV1I	GCAGC	1 cut(s)	34
BsuRI	GGCC	1 cut(s)	617
BtsCI	GGATG	1 cut(s)	15
BtsIMutI	CAGTG	2 cut(s)	284, 700
Cac8I	GCNNGC	3 cut(s)	27, 233, 312
CciI	TCATGA	2 cut(s)	756, 806
CfoI	GCGC	3 cut(s)	67, 147, 791
Cfr13I	GGNCC	2 cut(s)	615, 730
Csp6I	GTAC	1 cut(s)	523
CviAII	CATG	7 cut(s)	142, 526, 546, 674, 751, 757, 807
CviJI	RGCY	7 cut(s)	25, 244, 310, 343, 450, 610, 617
CviKI_1	RGCY	7 cut(s)	25, 244, 310, 343, 450, 610, 617
CviQI	GTAC	1 cut(s)	523
DdeI	CTNAG	3 cut(s)	18, 482, 743
DinI	GGCGCC	1 cut(s)	790
DpnI	GATC	2 cut(s)	182, 440
DpnII	GATC	2 cut(s)	180, 438
DraI	TTTAAA	1 cut(s)	796
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
EciI	GGCGGA	1 cut(s)	64
Eco32I	GATATC	1 cut(s)	514
Eco47I	GGWCC	1 cut(s)	730
EcoRV	GATATC	1 cut(s)	514
EgeI	GGCGCC	1 cut(s)	790
EheI	GGCGCC	1 cut(s)	790
Esp3I	CGTCTC	1 cut(s)	37
FaeI	CATG	7 cut(s)	145, 529, 549, 677, 754, 760, 810
FalI	AAGNNNNNCTT	2 cut(s)	228, 260
FaqI	GGGAC	2 cut(s)	380, 716
FatI	CATG	7 cut(s)	141, 525, 545, 673, 750, 756, 806
FauNDI	CATATG	1 cut(s)	493
FbaI	TGATCA	1 cut(s)	180
FblI	GTMKAC	1 cut(s)	355
Fnu4HI	GCNGC	2 cut(s)	23, 618
FokI	GGATG	1 cut(s)	22
Fsp4HI	GCNGC	2 cut(s)	23, 618
FspBI	CTAG	1 cut(s)	408
FspI	TGCGCA	1 cut(s)	146
GlaI	GCGC	3 cut(s)	66, 146, 790
GluI	GCNGC	2 cut(s)	23, 618
GsaI	CCCAGC	1 cut(s)	624
HaeII	RGCGCY	2 cut(s)	68, 792
HaeIII	GGCC	1 cut(s)	617
HapII	CCGG	1 cut(s)	263
HhaI	GCGC	3 cut(s)	67, 147, 791
Hin1I	GRCGYC	1 cut(s)	789
Hin1II	CATG	7 cut(s)	145, 529, 549, 677, 754, 760, 810
Hin6I	GCGC	3 cut(s)	65, 145, 789
HinP1I	GCGC	3 cut(s)	65, 145, 789
HinfI	GANTC	2 cut(s)	541, 647
HpaII	CCGG	1 cut(s)	263
HphI	GGTGA	1 cut(s)	278
Hpy166II	GTNNAC	3 cut(s)	356, 628, 698
Hpy188I	TCNGA	1 cut(s)	35
Hpy188III	TCNNGA	3 cut(s)	600, 757, 807
Hpy8I	GTNNAC	3 cut(s)	356, 628, 698
HpyAV	CCTTC	1 cut(s)	641
HpyCH4III	ACNGT	1 cut(s)	288
HpyCH4IV	ACGT	1 cut(s)	503
HpyCH4V	TGCA	6 cut(s)	29, 235, 389, 461, 491, 677
HpyF10VI	GCNNNNNNNGC	4 cut(s)	232, 241, 302, 311
HpyF3I	CTNAG	3 cut(s)	18, 482, 743
HpySE526I	ACGT	1 cut(s)	503
Hsp92I	GRCGYC	1 cut(s)	789
Hsp92II	CATG	7 cut(s)	145, 529, 549, 677, 754, 760, 810
HspAI	GCGC	3 cut(s)	65, 145, 789
KasI	GGCGCC	1 cut(s)	788
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	2 cut(s)	180, 438
LmnI	GCTCC	1 cut(s)	709
Lsp1109I	GCAGC	1 cut(s)	34
MaeI	CTAG	1 cut(s)	408
MaeII	ACGT	1 cut(s)	503
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	2 cut(s)	182, 440
MbiI	CCGCTC	1 cut(s)	436
MboI	GATC	2 cut(s)	180, 438
MboII	GAAGA	1 cut(s)	52
MhlI	GDGCHC	2 cut(s)	228, 286
MluCI	AATT	4 cut(s)	148, 187, 555, 641
Mly113I	GGCGCC	1 cut(s)	789
MmeI	TCCRAC	1 cut(s)	687
MnlI	CCTC	4 cut(s)	29, 53, 262, 406
MseI	TTAA	4 cut(s)	86, 249, 771, 795
MslI	CAYNNNNRTG	1 cut(s)	755
MspA1I	CMGCKG	1 cut(s)	620
MspI	CCGG	1 cut(s)	263
MspR9I	CCNGG	1 cut(s)	264
MwoI	GCNNNNNNNGC	4 cut(s)	232, 241, 302, 311
NarI	GGCGCC	1 cut(s)	789
NciI	CCSGG	1 cut(s)	264
NdeI	CATATG	1 cut(s)	493
NdeII	GATC	2 cut(s)	180, 438
NlaIII	CATG	7 cut(s)	145, 529, 549, 677, 754, 760, 810
NlaIV	GGNNCC	2 cut(s)	732, 790
NmuCI	GTSAC	1 cut(s)	94
NsbI	TGCGCA	1 cut(s)	146
NspI	RCATGY	1 cut(s)	145
PagI	TCATGA	2 cut(s)	756, 806
PfeI	GAWTC	2 cut(s)	541, 647
PkrI	GCNGC	2 cut(s)	24, 619
PluTI	GGCGCC	1 cut(s)	792
PspFI	CCCAGC	1 cut(s)	620
PspN4I	GGNNCC	2 cut(s)	732, 790
PspPI	GGNCC	2 cut(s)	615, 730
PsrI	GAACNNNNNNTAC	2 cut(s)	515, 547
RsaI	GTAC	1 cut(s)	524
RsaNI	GTAC	1 cut(s)	523
RseI	CAYNNNNRTG	1 cut(s)	755
SaqAI	TTAA	4 cut(s)	86, 249, 771, 795
SatI	GCNGC	2 cut(s)	23, 618
Sau3AI	GATC	2 cut(s)	180, 438
Sau96I	GGNCC	2 cut(s)	615, 730
ScrFI	CCNGG	1 cut(s)	264
SduI	GDGCHC	2 cut(s)	228, 286
SetI	ASST	9 cut(s)	27, 173, 273, 374, 452, 506, 521, 586, 633
SfoI	GGCGCC	1 cut(s)	790
SinI	GGWCC	1 cut(s)	730
SmiMI	CAYNNNNRTG	1 cut(s)	755
SmlI	CTYRAG	1 cut(s)	598
SmoI	CTYRAG	1 cut(s)	598
Sse9I	AATT	4 cut(s)	148, 187, 555, 641
SsiI	CCGC	3 cut(s)	49, 436, 618
SspDI	GGCGCC	1 cut(s)	788
SspMI	CTAG	1 cut(s)	408
StyD4I	CCNGG	1 cut(s)	262
TaaI	ACNGT	1 cut(s)	288
TaiI	ACGT	1 cut(s)	506
TasI	AATT	4 cut(s)	148, 187, 555, 641
TatI	WGTACW	1 cut(s)	522
TauI	GCSGC	1 cut(s)	620
TfiI	GAWTC	2 cut(s)	541, 647
Tru1I	TTAA	4 cut(s)	86, 249, 771, 795
Tru9I	TTAA	4 cut(s)	86, 249, 771, 795
TscAI	CASTG	2 cut(s)	291, 700
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	1 cut(s)	22
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	4 cut(s)	460, 676, 773, 795
TspRI	CASTG	2 cut(s)	291, 700
VpaK11BI	GGWCC	1 cut(s)	730
XapI	RAATTY	2 cut(s)	187, 641
XceI	RCATGY	1 cut(s)	145
XmiI	GTMKAC	1 cut(s)	355
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.