Rorug06G0384800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002925
Physical Location & Seq
Forward (+)
53048202 .. 53051847
3646 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0384800.1

Sequence Viewer

Length: 1206 bp
ATGGAGTATCTTCATTGCCTGCCTCCTTCTGTGGAACCGCGAGTGTCCGATCACATGCCACAGATCATTGATATGATTAAGCAGATTATTGAAAATGGACATGCCTATGGAGTTGATGGGGATGTCTATTTCAGTGTTGACAAGTTCCCAGATTATGGACGTCTATCTGGGCGAAAATTAGAAGATAATCGAGCCGGTGAGCGAGTCACTGTTGATTCAAGGAAGAAAAATCCTGCTGATTTTGCTTTATGGAAGTCTGCAAAGGAAGGTGAACCCTTCTGGGACAGTCCATGGGGCCCTGGAAGACCTGGTTGGCATATCGAGTGCAGTGCCATGAGTGCTGCGTATTTGGGTTACTCTTTTGACATACATGGTGGAGGGATGGACCTTGTGTTTCCCCACCATGAGAATGAAATTGCTCAGAGTTGTGCTGCATGTAAACAAAGTGATATAAGCTACTGGATACACAATGGTTTTGTCACTATAGACTCCGAGAAAATGTCGAAATCCCTAGGGAACTTCTTTACAATTCGGCAGGTTATAGACCTATACCATCCATTGGCTTTGCGACTTTTCTTATTAGGGACCCATTATCAGTCTCCAATCAACTACTCTGATGTGCAGCTTGAAAGCACTTCAGAGCGGATCTTCTACATATTTCAGACTTTATATGATTGTGAAAGTGTCGTAAGCCAGCATGATGTGCCAACCCTGAAGGATACCATTCCTCCTGAAATAGTGGAAAGCATCAATAAGTTCTACAATGTTTTTGTAACATCAATGTCGGATGATCTTCACAGTTCTGTTGTTTTTGGTGCATTATCAGACCCATTAAAAACTATGAATGATCTGCTACACACTCGCAAGGGCAAGAAGCAAGCATTGAGGATAGAGTCTCTTGCAGCTTTGGAAAAGATTACCAGGAATGTTTTAAGCATTTTGGGATTACTGCCTGCAAGTTACGCCGAGATTCTGCAGCAGCTGAGAGAAAAAGCCTTGAAGCGTGCAAAATTAACAGAAGATCAAGTATTGCAGAAAATCGAGGAAAGAACTGCAGCAAGGAAGAACAAAGAGTACGAAAAATCAGATACAATTCGAAAAAATTTAGCTGCTGTGGGAATCACTCTTATGGACAACCCAGATGGGACAACATGGAGACCAGCTGTACCTCTTGCAATTCAAGAGCAGCAGGTGGCATCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ceramidase

Protein Analysis

401

Amino Acids

45.31

Weight (kDa)

5.83

Isoelectric Point (pI)

55.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1e PF01406 1 - 212 3e-92 tRNA synthetases class I (C) catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1180
AatII GACGTC 1 cut(s) 163
Acc36I ACCTGC 2 cut(s) 526, 1180
AccB7I CCANNNNNTGG 2 cut(s) 155, 559
AccBSI CCGCTC 1 cut(s) 643
AccII CGCG 1 cut(s) 40
AciI CCGC 2 cut(s) 38, 643
AclWI GGATC 1 cut(s) 653
AcsI RAATTY 1 cut(s) 1102
AcuI CTGAAG 2 cut(s) 621, 734
AcyI GRCGYC 1 cut(s) 160
AfaI GTAC 2 cut(s) 1076, 1167
AfiI CCNNNNNNNGG 2 cut(s) 155, 559
AgsI TTSAA 5 cut(s) 92, 219, 629, 1000, 1181
AjnI CCWGG 3 cut(s) 298, 307, 920
AjuI GAANNNNNNNTTGG 2 cut(s) 295, 327
AluBI AGCT 6 cut(s) 456, 625, 905, 982, 1109, 1163
AluI AGCT 6 cut(s) 456, 625, 905, 982, 1109, 1163
Alw26I GTCTC 3 cut(s) 603, 900, 1150
AlwI GGATC 1 cut(s) 653
AlwNI CAGNNNCTG 1 cut(s) 982
AoxI GGCC 1 cut(s) 295
ApaI GGGCCC 1 cut(s) 299
ApeKI GCWGC 9 cut(s) 341, 431, 622, 902, 976, 979, 1055, 1109, 1186
ApoI RAATTY 1 cut(s) 1102
AspA2I CCTAGG 1 cut(s) 511
AspS9I GGNCC 4 cut(s) 295, 296, 385, 585
AsuHPI GGTGA 2 cut(s) 209, 281
AsuII TTCGAA 1 cut(s) 1096
AvaII GGWCC 2 cut(s) 385, 585
AvrII CCTAGG 1 cut(s) 511
BaeGI GKGCMC 1 cut(s) 299
BanII GRGCYC 1 cut(s) 299
BbsI GAAGAC 1 cut(s) 310
BbvI GCAGC 9 cut(s) 328, 418, 634, 914, 988, 991, 1067, 1096, 1198
BccI CCATC 4 cut(s) 110, 376, 561, 1136
BcgI CGANNNNNNTGC 2 cut(s) 311, 345
BciT130I CCWGG 3 cut(s) 300, 309, 922
BciVI GTATCC 2 cut(s) 456, 712
BcoDI GTCTC 3 cut(s) 603, 900, 1150
BfaI CTAG 1 cut(s) 512
BfmI CTRYAG 3 cut(s) 483, 974, 1053
BfuAI ACCTGC 2 cut(s) 526, 1180
BfuI GTATCC 2 cut(s) 456, 712
BisI GCNGC 9 cut(s) 342, 432, 623, 903, 977, 980, 1056, 1110, 1187
BlnI CCTAGG 1 cut(s) 511
BlsI GCNGC 9 cut(s) 343, 433, 624, 904, 978, 981, 1057, 1111, 1188
Bme1390I CCNGG 3 cut(s) 300, 309, 922
Bme18I GGWCC 2 cut(s) 385, 585
BmgT120I GGNCC 4 cut(s) 295, 296, 385, 585
BmiI GGNNCC 5 cut(s) 36, 296, 297, 586, 587
BmrFI CCNGG 3 cut(s) 300, 309, 922
BmsI GCATC 1 cut(s) 756
BpiI GAAGAC 1 cut(s) 310
Bpu14I TTCGAA 1 cut(s) 1096
BsaHI GRCGYC 1 cut(s) 160
BsaI GGTCTC 1 cut(s) 1150
BsaJI CCNNGG 3 cut(s) 290, 298, 511
BsaXI ACNNNNNCTCC 2 cut(s) 712, 742
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 559
Bse118I RCCGGY 1 cut(s) 194
Bse1I ACTGG 1 cut(s) 464
Bse3DI GCAATG 1 cut(s) 13
BseBI CCWGG 3 cut(s) 300, 309, 922
BseDI CCNNGG 3 cut(s) 290, 298, 511
BseGI GGATG 4 cut(s) 127, 387, 553, 793
BseLI CCNNNNNNNGG 2 cut(s) 155, 559
BseMI GCAATG 1 cut(s) 13
BseMII CTCAG 2 cut(s) 434, 974
BseNI ACTGG 1 cut(s) 464
BseSI GKGCMC 1 cut(s) 299
BseXI GCAGC 9 cut(s) 328, 418, 634, 914, 988, 991, 1067, 1096, 1198
BsgI GTGCAG 2 cut(s) 346, 641
Bsh1236I CGCG 1 cut(s) 40
BshFI GGCC 1 cut(s) 297
BsiSI CCGG 1 cut(s) 195
BslFI GGGAC 3 cut(s) 296, 598, 1159
BslI CCNNNNNNNGG 2 cut(s) 155, 559
BsmAI GTCTC 3 cut(s) 603, 900, 1150
BsmFI GGGAC 3 cut(s) 296, 598, 1159
BsnI GGCC 1 cut(s) 297
Bso31I GGTCTC 1 cut(s) 1150
Bsp119I TTCGAA 1 cut(s) 1096
Bsp120I GGGCCC 1 cut(s) 295
Bsp1286I GDGCHC 1 cut(s) 299
Bsp143I GATC 6 cut(s) 49, 63, 645, 790, 847, 1021
Bsp19I CCATGG 1 cut(s) 290
BspACI CCGC 2 cut(s) 38, 643
BspANI GGCC 1 cut(s) 297
BspCNI CTCAG 2 cut(s) 433, 975
BspFNI CGCG 1 cut(s) 40
BspLI GGNNCC 5 cut(s) 36, 296, 297, 586, 587
BspMAI CTGCAG 2 cut(s) 978, 1057
BspMI ACCTGC 2 cut(s) 526, 1180
BspPI GGATC 1 cut(s) 653
BspT104I TTCGAA 1 cut(s) 1096
BspTNI GGTCTC 1 cut(s) 1150
BsrBI CCGCTC 1 cut(s) 643
BsrDI GCAATG 1 cut(s) 13
BsrFI RCCGGY 1 cut(s) 194
BsrI ACTGG 1 cut(s) 464
BssAI RCCGGY 1 cut(s) 194
BssECI CCNNGG 3 cut(s) 290, 298, 511
BssMI GATC 6 cut(s) 49, 63, 645, 790, 847, 1021
BssNI GRCGYC 1 cut(s) 160
BssT1I CCWWGG 2 cut(s) 290, 511
Bst2UI CCWGG 3 cut(s) 300, 309, 922
Bst4CI ACNGT 3 cut(s) 211, 287, 800
BstACI GRCGYC 1 cut(s) 160
BstAPI GCANNNNNTGC 1 cut(s) 703
BstBI TTCGAA 1 cut(s) 1096
BstC8I GCNNGC 5 cut(s) 20, 695, 879, 954, 1005
BstDEI CTNAG 2 cut(s) 420, 983
BstDSI CCRYGG 1 cut(s) 290
BstF5I GGATG 4 cut(s) 127, 387, 553, 793
BstFNI CGCG 1 cut(s) 40
BstKTI GATC 6 cut(s) 52, 66, 648, 793, 850, 1024
BstMAI GTCTC 3 cut(s) 603, 900, 1150
BstMBI GATC 6 cut(s) 49, 63, 645, 790, 847, 1021
BstMWI GCNNNNNNNGC 4 cut(s) 242, 338, 703, 962
BstNI CCWGG 3 cut(s) 300, 309, 922
BstNSI RCATGY 3 cut(s) 58, 104, 438
BstSCI CCNGG 3 cut(s) 298, 307, 920
BstSFI CTRYAG 3 cut(s) 483, 974, 1053
BstSLI GKGCMC 1 cut(s) 299
BstUI CGCG 1 cut(s) 40
BstV1I GCAGC 9 cut(s) 328, 418, 634, 914, 988, 991, 1067, 1096, 1198
BstV2I GAAGAC 1 cut(s) 310
BstX2I RGATCY 1 cut(s) 645
BstYI RGATCY 1 cut(s) 645
BsuI GTATCC 2 cut(s) 456, 712
BsuRI GGCC 1 cut(s) 297
BtgI CCRYGG 1 cut(s) 290
BtsCI GGATG 4 cut(s) 127, 387, 553, 793
BtsI GCAGTG 1 cut(s) 334
BtsIMutI CAGTG 3 cut(s) 139, 207, 334
BveI ACCTGC 2 cut(s) 526, 1180
Cac8I GCNNGC 5 cut(s) 20, 695, 879, 954, 1005
CaiI CAGNNNCTG 1 cut(s) 982
Cfr10I RCCGGY 1 cut(s) 194
Cfr13I GGNCC 4 cut(s) 295, 296, 385, 585
CsiI ACCWGGT 1 cut(s) 307
Csp6I GTAC 2 cut(s) 1075, 1166
CviAII CATG 9 cut(s) 55, 101, 291, 334, 371, 404, 435, 698, 1152
CviQI GTAC 2 cut(s) 1075, 1166
DdeI CTNAG 2 cut(s) 420, 983
DpnI GATC 6 cut(s) 51, 65, 647, 792, 849, 1023
DpnII GATC 6 cut(s) 49, 63, 645, 790, 847, 1021
Eco130I CCWWGG 2 cut(s) 290, 511
Eco24I GRGCYC 1 cut(s) 299
Eco31I GGTCTC 1 cut(s) 1150
Eco47I GGWCC 2 cut(s) 385, 585
Eco57I CTGAAG 2 cut(s) 621, 734
EcoO109I RGGNCCY 3 cut(s) 295, 296, 585
EcoRII CCWGG 3 cut(s) 298, 307, 920
EcoT14I CCWWGG 2 cut(s) 290, 511
EcoT38I GRGCYC 1 cut(s) 299
ErhI CCWWGG 2 cut(s) 290, 511
FaeI CATG 9 cut(s) 58, 104, 294, 337, 374, 407, 438, 701, 1155
FaqI GGGAC 3 cut(s) 296, 598, 1159
FatI CATG 9 cut(s) 54, 100, 290, 333, 370, 403, 434, 697, 1151
Fnu4HI GCNGC 9 cut(s) 342, 432, 623, 903, 977, 980, 1056, 1110, 1187
FokI GGATG 4 cut(s) 134, 394, 540, 800
FriOI GRGCYC 1 cut(s) 299
Fsp4HI GCNGC 9 cut(s) 342, 432, 623, 903, 977, 980, 1056, 1110, 1187
FspBI CTAG 1 cut(s) 512
GluI GCNGC 9 cut(s) 342, 432, 623, 903, 977, 980, 1056, 1110, 1187
HaeIII GGCC 1 cut(s) 297
HapII CCGG 1 cut(s) 195
Hin1I GRCGYC 1 cut(s) 160
Hin1II CATG 9 cut(s) 58, 104, 294, 337, 374, 407, 438, 701, 1155
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HinfI GANTC 6 cut(s) 204, 215, 488, 893, 970, 1119
HpaII CCGG 1 cut(s) 195
HphI GGTGA 2 cut(s) 209, 281
Hpy166II GTNNAC 3 cut(s) 139, 272, 440
Hpy188I TCNGA 9 cut(s) 49, 423, 493, 616, 640, 663, 787, 826, 1087
Hpy188III TCNNGA 2 cut(s) 731, 1181
Hpy8I GTNNAC 3 cut(s) 139, 272, 440
HpyAV CCTTC 4 cut(s) 36, 260, 286, 709
HpyCH4III ACNGT 3 cut(s) 211, 287, 800
HpyCH4IV ACGT 1 cut(s) 160
HpyF10VI GCNNNNNNNGC 4 cut(s) 242, 338, 703, 962
HpyF3I CTNAG 2 cut(s) 420, 983
HpySE526I ACGT 1 cut(s) 160
Hsp92I GRCGYC 1 cut(s) 160
Hsp92II CATG 9 cut(s) 58, 104, 294, 337, 374, 407, 438, 701, 1155
KflI GGGWCCC 1 cut(s) 585
Kzo9I GATC 6 cut(s) 49, 63, 645, 790, 847, 1021
Lsp1109I GCAGC 9 cut(s) 328, 418, 634, 914, 988, 991, 1067, 1096, 1198
LweI GCATC 1 cut(s) 756
MabI ACCWGGT 1 cut(s) 307
MaeI CTAG 1 cut(s) 512
MaeII ACGT 1 cut(s) 160
MaeIII GTNAC 5 cut(s) 205, 353, 478, 772, 959
MalI GATC 6 cut(s) 51, 65, 647, 792, 849, 1023
MbiI CCGCTC 1 cut(s) 643
MboI GATC 6 cut(s) 49, 63, 645, 790, 847, 1021
MboII GAAGA 7 cut(s) 194, 235, 315, 640, 785, 1031, 1075
MflI RGATCY 1 cut(s) 645
MhlI GDGCHC 1 cut(s) 299
MluCI AATT 7 cut(s) 176, 414, 528, 1010, 1092, 1102, 1176
MlyI GAGTC 3 cut(s) 213, 482, 902
MmeI TCCRAC 1 cut(s) 765
MnlI CCTC 6 cut(s) 33, 371, 738, 879, 1036, 1179
MseI TTAA 4 cut(s) 78, 833, 932, 1013
MslI CAYNNNNRTG 4 cut(s) 71, 105, 408, 1127
MspA1I CMGCKG 2 cut(s) 982, 1163
MspI CCGG 1 cut(s) 195
MspR9I CCNGG 3 cut(s) 300, 309, 922
MvaI CCWGG 3 cut(s) 300, 309, 922
MvnI CGCG 1 cut(s) 40
MwoI GCNNNNNNNGC 4 cut(s) 242, 338, 703, 962
NcoI CCATGG 1 cut(s) 290
NdeII GATC 6 cut(s) 49, 63, 645, 790, 847, 1021
NlaIII CATG 9 cut(s) 58, 104, 294, 337, 374, 407, 438, 701, 1155
NlaIV GGNNCC 5 cut(s) 36, 296, 297, 586, 587
NmeAIII GCCGAG 1 cut(s) 991
NmuCI GTSAC 2 cut(s) 205, 478
NspI RCATGY 3 cut(s) 58, 104, 438
NspV TTCGAA 1 cut(s) 1096
PaqCI CACCTGC 1 cut(s) 1180
PfeI GAWTC 3 cut(s) 215, 970, 1119
PflMI CCANNNNNTGG 2 cut(s) 155, 559
PkrI GCNGC 9 cut(s) 343, 433, 624, 904, 978, 981, 1057, 1111, 1188
PleI GAGTC 3 cut(s) 212, 482, 901
PpsI GAGTC 3 cut(s) 212, 482, 901
PpuMI RGGWCCY 1 cut(s) 585
Psp5II RGGWCCY 1 cut(s) 585
Psp6I CCWGG 3 cut(s) 298, 307, 920
PspGI CCWGG 3 cut(s) 298, 307, 920
PspN4I GGNNCC 5 cut(s) 36, 296, 297, 586, 587
PspOMI GGGCCC 1 cut(s) 295
PspPI GGNCC 4 cut(s) 295, 296, 385, 585
PspPPI RGGWCCY 1 cut(s) 585
PsrI GAACNNNNNNTAC 2 cut(s) 1058, 1090
PstI CTGCAG 2 cut(s) 978, 1057
PstNI CAGNNNCTG 1 cut(s) 982
PsuI RGATCY 1 cut(s) 645
PvuII CAGCTG 2 cut(s) 982, 1163
RsaI GTAC 2 cut(s) 1076, 1167
RsaNI GTAC 2 cut(s) 1075, 1166
RseI CAYNNNNRTG 4 cut(s) 71, 105, 408, 1127
SaqAI TTAA 4 cut(s) 78, 833, 932, 1013
SatI GCNGC 9 cut(s) 342, 432, 623, 903, 977, 980, 1056, 1110, 1187
Sau3AI GATC 6 cut(s) 49, 63, 645, 790, 847, 1021
Sau96I GGNCC 4 cut(s) 295, 296, 385, 585
SchI GAGTC 3 cut(s) 213, 482, 902
ScrFI CCNGG 3 cut(s) 300, 309, 922
SduI GDGCHC 1 cut(s) 299
SexAI ACCWGGT 1 cut(s) 307
SfaNI GCATC 1 cut(s) 756
SfcI CTRYAG 3 cut(s) 483, 974, 1053
SfuI TTCGAA 1 cut(s) 1096
SinI GGWCC 2 cut(s) 385, 585
SmiMI CAYNNNNRTG 4 cut(s) 71, 105, 408, 1127
Sse9I AATT 7 cut(s) 176, 414, 528, 1010, 1092, 1102, 1176
SsiI CCGC 2 cut(s) 38, 643
SspMI CTAG 1 cut(s) 512
StyD4I CCNGG 3 cut(s) 298, 307, 920
StyI CCWWGG 2 cut(s) 290, 511
TaaI ACNGT 3 cut(s) 211, 287, 800
TaiI ACGT 1 cut(s) 163
TaqI TCGA 5 cut(s) 190, 321, 503, 1041, 1096
TasI AATT 7 cut(s) 176, 414, 528, 1010, 1092, 1102, 1176
TfiI GAWTC 3 cut(s) 215, 970, 1119
Tru1I TTAA 4 cut(s) 78, 833, 932, 1013
Tru9I TTAA 4 cut(s) 78, 833, 932, 1013
TscAI CASTG 3 cut(s) 139, 214, 334
TseFI GTSAC 2 cut(s) 205, 478
TseI GCWGC 9 cut(s) 341, 431, 622, 902, 976, 979, 1055, 1109, 1186
Tsp45I GTSAC 2 cut(s) 205, 478
TspDTI ATGAA 2 cut(s) 426, 857
TspRI CASTG 3 cut(s) 139, 214, 334
Van91I CCANNNNNTGG 2 cut(s) 155, 559
VpaK11BI GGWCC 2 cut(s) 385, 585
XapI RAATTY 1 cut(s) 1102
XceI RCATGY 3 cut(s) 58, 104, 438
XmaJI CCTAGG 1 cut(s) 511
XspI CTAG 1 cut(s) 512
ZraI GACGTC 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.