RchiOBHm_Chr6g0311011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002925
Physical Location & Seq
Forward (+)
68141413 .. 68144263
2851 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27968

Sequence Viewer

Length: 810 bp
ATGGTGTGGATGGTAACTCAACAGTTTGTGATTAAAGGAAAGAGAAGGCGCATATGGGGAGGAGCTTTTCTCTGTTGGGTGCTGTTAATGTTGGTCACTCCCAAAATTTCTCACTCCCCAAATCACCATCACTATGCTGACATGCGCAATTTCCTTGGAGTGCCCAACACATTGAATGTGATCACCAGTTTCCCATTCTTGGTTGTTGGGGTTCTGGGTTTTGTTCTCTGTGTCCAAGGAGGCTTTTTCAATATCAGTTTGCCAGGTGAAGTTTGGGGTTGGGCACTGTTCTATGCAGGAATAGCAGGGCTGGCTTTTGGGTCTGCTTATTATCATTTGAAGCCTGATGATAGTAGAGTGACTTGGGATACCTTGCCGATGATGATCGCATTCTCCTCGCTTTTCTCTAGTTTTATAGTGGAGAGAGTGGGAGAGAGAATTGGCTTAAGTTGTCTATTTGCACTCCTCGTTATTGCGGTTCTCAGTACTGCTTATGAGAGAACATGCAATGATATCAGATTGTACATGATGTTCCAATTGATTCCATGTATAGCAATTCCAGGAATGACATTTGTGTTCCCACCCAAATATACTCACTCAAGATATTGGCTTTGGGCAGCAGGGGCTTACATTCTCTCCAAATTTGAAGCTTTTGCTGACATGAAAATATACCATGCAAATCGGTACACTATCAGTGGGCACTCTTTGGAGCATTTGTGTTTAGTAATCGTCCCTGTTCTGCTCAGTATTATGCTCGTGCACAGAAACAGGAAATGTCAAAGAATAGGGACCTTTAAACAACTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ceramidase

Protein Analysis

269

Amino Acids

30.66

Weight (kDa)

9.49

Isoelectric Point (pI)

31.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ceramidase PF05875 57 - 174 8.9e-07 Ceramidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 146
AciI CCGC 1 cut(s) 476
AcsI RAATTY 2 cut(s) 105, 641
AfaI GTAC 3 cut(s) 487, 524, 686
AfiI CCNNNNNNNGG 1 cut(s) 199
AflII CTTAAG 1 cut(s) 445
AgsI TTSAA 4 cut(s) 175, 250, 340, 647
AjnI CCWGG 2 cut(s) 262, 559
AluBI AGCT 2 cut(s) 65, 650
AluI AGCT 2 cut(s) 65, 650
Alw21I GWGCWC 1 cut(s) 762
Alw44I GTGCAC 1 cut(s) 758
ApaLI GTGCAC 1 cut(s) 758
ApeKI GCWGC 1 cut(s) 617
ApoI RAATTY 2 cut(s) 105, 641
AspLEI GCGC 2 cut(s) 51, 147
AspS9I GGNCC 1 cut(s) 789
AsuHPI GGTGA 3 cut(s) 116, 175, 278
AvaII GGWCC 1 cut(s) 789
BaeGI GKGCMC 4 cut(s) 165, 286, 702, 762
BauI CACGAG 1 cut(s) 755
Bbv12I GWGCWC 1 cut(s) 762
BbvI GCAGC 1 cut(s) 629
BccI CCATC 2 cut(s) 4, 135
BcgI CGANNNNNNTGC 2 cut(s) 378, 412
BciT130I CCWGG 2 cut(s) 264, 561
BciVI GTATCC 1 cut(s) 361
BclI TGATCA 1 cut(s) 180
BfaI CTAG 1 cut(s) 408
BfrI CTTAAG 1 cut(s) 445
BfuI GTATCC 1 cut(s) 361
BisI GCNGC 1 cut(s) 618
BlsI GCNGC 1 cut(s) 619
BmcAI AGTACT 1 cut(s) 487
Bme1390I CCNGG 2 cut(s) 264, 561
Bme18I GGWCC 1 cut(s) 789
BmgT120I GGNCC 1 cut(s) 789
BmiI GGNNCC 1 cut(s) 790
BmrFI CCNGG 2 cut(s) 264, 561
BplI GAGNNNNNCTC 2 cut(s) 54, 86
BpuEI CTTGAG 1 cut(s) 583
BsaBI GATNNNNATC 1 cut(s) 383
BsaJI CCNNGG 2 cut(s) 154, 235
BsaXI ACNNNNNCTCC 4 cut(s) 620, 650, 701, 731
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse1I ACTGG 1 cut(s) 186
Bse3DI GCAATG 1 cut(s) 514
Bse8I GATNNNNATC 1 cut(s) 383
BseBI CCWGG 2 cut(s) 264, 561
BseDI CCNNGG 2 cut(s) 154, 235
BseGI GGATG 1 cut(s) 15
BseJI GATNNNNATC 1 cut(s) 383
BseLI CCNNNNNNNGG 1 cut(s) 199
BseMI GCAATG 1 cut(s) 514
BseMII CTCAG 2 cut(s) 496, 757
BseNI ACTGG 1 cut(s) 186
BseRI GAGGAG 3 cut(s) 75, 385, 455
BseSI GKGCMC 4 cut(s) 165, 286, 702, 762
BseXI GCAGC 1 cut(s) 629
BsiHKAI GWGCWC 1 cut(s) 762
BslFI GGGAC 2 cut(s) 716, 802
BslI CCNNNNNNNGG 1 cut(s) 199
BsmFI GGGAC 2 cut(s) 716, 802
BsmI GAATGC 1 cut(s) 389
Bsp1286I GDGCHC 4 cut(s) 165, 286, 702, 762
Bsp1407I TGTACA 1 cut(s) 522
Bsp143I GATC 2 cut(s) 180, 384
BspACI CCGC 1 cut(s) 476
BspCNI CTCAG 2 cut(s) 495, 756
BspLI GGNNCC 1 cut(s) 790
BspTI CTTAAG 1 cut(s) 445
BsrDI GCAATG 1 cut(s) 514
BsrGI TGTACA 1 cut(s) 522
BsrI ACTGG 1 cut(s) 186
BssECI CCNNGG 2 cut(s) 154, 235
BssMI GATC 2 cut(s) 180, 384
BssSI CACGAG 1 cut(s) 755
BssT1I CCWWGG 2 cut(s) 154, 235
Bst2BI CACGAG 1 cut(s) 755
Bst2UI CCWGG 2 cut(s) 264, 561
Bst4CI ACNGT 2 cut(s) 24, 288
BstAFI CTTAAG 1 cut(s) 445
BstAUI TGTACA 1 cut(s) 522
BstC8I GCNNGC 1 cut(s) 312
BstDEI CTNAG 2 cut(s) 482, 743
BstF5I GGATG 1 cut(s) 15
BstHHI GCGC 2 cut(s) 51, 147
BstKTI GATC 2 cut(s) 183, 387
BstMBI GATC 2 cut(s) 180, 384
BstMWI GCNNNNNNNGC 3 cut(s) 302, 311, 623
BstNI CCWGG 2 cut(s) 264, 561
BstNSI RCATGY 2 cut(s) 145, 507
BstSCI CCNGG 2 cut(s) 262, 559
BstSLI GKGCMC 4 cut(s) 165, 286, 702, 762
BstV1I GCAGC 1 cut(s) 629
BsuI GTATCC 1 cut(s) 361
BtsCI GGATG 1 cut(s) 15
BtsIMutI CAGTG 2 cut(s) 284, 700
Cac8I GCNNGC 1 cut(s) 312
CfoI GCGC 2 cut(s) 51, 147
Cfr13I GGNCC 1 cut(s) 789
Csp6I GTAC 3 cut(s) 486, 523, 685
CviAII CATG 6 cut(s) 142, 504, 526, 546, 661, 674
CviJI RGCY 9 cut(s) 65, 243, 310, 314, 343, 444, 610, 626, 650
CviKI_1 RGCY 9 cut(s) 65, 243, 310, 314, 343, 444, 610, 626, 650
CviQI GTAC 3 cut(s) 486, 523, 685
DdeI CTNAG 2 cut(s) 482, 743
DpnI GATC 2 cut(s) 182, 386
DpnII GATC 2 cut(s) 180, 384
DraI TTTAAA 1 cut(s) 796
Eco130I CCWWGG 2 cut(s) 154, 235
Eco32I GATATC 1 cut(s) 514
Eco47I GGWCC 1 cut(s) 789
EcoO109I RGGNCCY 1 cut(s) 789
EcoRII CCWGG 2 cut(s) 262, 559
EcoRV GATATC 1 cut(s) 514
EcoT14I CCWWGG 2 cut(s) 154, 235
ErhI CCWWGG 2 cut(s) 154, 235
FaeI CATG 6 cut(s) 145, 507, 529, 549, 664, 677
FaqI GGGAC 2 cut(s) 716, 802
FatI CATG 6 cut(s) 141, 503, 525, 545, 660, 673
FauNDI CATATG 1 cut(s) 53
FbaI TGATCA 1 cut(s) 180
Fnu4HI GCNGC 1 cut(s) 618
FokI GGATG 1 cut(s) 22
Fsp4HI GCNGC 1 cut(s) 618
FspBI CTAG 1 cut(s) 408
FspI TGCGCA 1 cut(s) 146
GlaI GCGC 2 cut(s) 50, 146
GluI GCNGC 1 cut(s) 618
HhaI GCGC 2 cut(s) 51, 147
Hin1II CATG 6 cut(s) 145, 507, 529, 549, 664, 677
Hin6I GCGC 2 cut(s) 49, 145
HinP1I GCGC 2 cut(s) 49, 145
HindIII AAGCTT 1 cut(s) 648
HinfI GANTC 1 cut(s) 541
HphI GGTGA 3 cut(s) 116, 175, 278
Hpy166II GTNNAC 2 cut(s) 687, 760
Hpy188I TCNGA 1 cut(s) 518
Hpy188III TCNNGA 1 cut(s) 600
Hpy8I GTNNAC 2 cut(s) 687, 760
HpyAV CCTTC 1 cut(s) 39
HpyCH4III ACNGT 2 cut(s) 24, 288
HpyCH4V TGCA 5 cut(s) 296, 461, 507, 677, 760
HpyF10VI GCNNNNNNNGC 3 cut(s) 302, 311, 623
HpyF3I CTNAG 2 cut(s) 482, 743
Hsp92II CATG 6 cut(s) 145, 507, 529, 549, 664, 677
HspAI GCGC 2 cut(s) 49, 145
Ksp22I TGATCA 1 cut(s) 180
Kzo9I GATC 2 cut(s) 180, 384
LmnI GCTCC 2 cut(s) 62, 709
Lsp1109I GCAGC 1 cut(s) 629
MaeI CTAG 1 cut(s) 408
MaeIII GTNAC 3 cut(s) 13, 94, 358
MalI GATC 2 cut(s) 182, 386
MboI GATC 2 cut(s) 180, 384
MfeI CAATTG 1 cut(s) 536
MhlI GDGCHC 4 cut(s) 165, 286, 702, 762
MluCI AATT 6 cut(s) 105, 148, 438, 536, 555, 641
MnlI CCTC 4 cut(s) 53, 233, 406, 476
MseI TTAA 4 cut(s) 33, 86, 446, 795
MslI CAYNNNNRTG 1 cut(s) 132
MspCI CTTAAG 1 cut(s) 445
MspR9I CCNGG 2 cut(s) 264, 561
MunI CAATTG 1 cut(s) 536
Mva1269I GAATGC 1 cut(s) 389
MvaI CCWGG 2 cut(s) 264, 561
MwoI GCNNNNNNNGC 3 cut(s) 302, 311, 623
NdeI CATATG 1 cut(s) 53
NdeII GATC 2 cut(s) 180, 384
NlaIII CATG 6 cut(s) 145, 507, 529, 549, 664, 677
NlaIV GGNNCC 1 cut(s) 790
NmuCI GTSAC 2 cut(s) 94, 358
NsbI TGCGCA 1 cut(s) 146
NspI RCATGY 2 cut(s) 145, 507
PctI GAATGC 1 cut(s) 389
PfeI GAWTC 1 cut(s) 541
PfoI TCCNGGA 1 cut(s) 559
PkrI GCNGC 1 cut(s) 619
PpuMI RGGWCCY 1 cut(s) 789
Psp5II RGGWCCY 1 cut(s) 789
Psp6I CCWGG 2 cut(s) 262, 559
PspGI CCWGG 2 cut(s) 262, 559
PspN4I GGNNCC 1 cut(s) 790
PspPI GGNCC 1 cut(s) 789
PspPPI RGGWCCY 1 cut(s) 789
PsrI GAACNNNNNNTAC 2 cut(s) 515, 547
RsaI GTAC 3 cut(s) 487, 524, 686
RsaNI GTAC 3 cut(s) 486, 523, 685
RseI CAYNNNNRTG 1 cut(s) 132
SaqAI TTAA 4 cut(s) 33, 86, 446, 795
SatI GCNGC 1 cut(s) 618
Sau3AI GATC 2 cut(s) 180, 384
Sau96I GGNCC 1 cut(s) 789
ScaI AGTACT 1 cut(s) 487
ScrFI CCNGG 2 cut(s) 264, 561
SduI GDGCHC 4 cut(s) 165, 286, 702, 762
SetI ASST 5 cut(s) 67, 268, 374, 652, 794
SinI GGWCC 1 cut(s) 789
SmiMI CAYNNNNRTG 1 cut(s) 132
SmlI CTYRAG 2 cut(s) 445, 598
SmoI CTYRAG 2 cut(s) 445, 598
Sse9I AATT 6 cut(s) 105, 148, 438, 536, 555, 641
SsiI CCGC 1 cut(s) 476
SspMI CTAG 1 cut(s) 408
StyD4I CCNGG 2 cut(s) 262, 559
StyI CCWWGG 2 cut(s) 154, 235
TaaI ACNGT 2 cut(s) 24, 288
TasI AATT 6 cut(s) 105, 148, 438, 536, 555, 641
TatI WGTACW 2 cut(s) 485, 522
TfiI GAWTC 1 cut(s) 541
Tru1I TTAA 4 cut(s) 33, 86, 446, 795
Tru9I TTAA 4 cut(s) 33, 86, 446, 795
TscAI CASTG 2 cut(s) 291, 700
TseFI GTSAC 2 cut(s) 94, 358
TseI GCWGC 1 cut(s) 617
Tsp45I GTSAC 2 cut(s) 94, 358
TspDTI ATGAA 1 cut(s) 677
TspRI CASTG 2 cut(s) 291, 700
Vha464I CTTAAG 1 cut(s) 445
VneI GTGCAC 1 cut(s) 758
VpaK11BI GGWCC 1 cut(s) 789
XapI RAATTY 2 cut(s) 105, 641
XceI RCATGY 2 cut(s) 145, 507
XcmI CCANNNNNNNNNTGG 1 cut(s) 270
XspI CTAG 1 cut(s) 408
ZrmI AGTACT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.