Rh6DG501500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0002925
Physical Location & Seq
Forward (+)
65735328 .. 65739040
3713 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG501500.1

Sequence Viewer

Length: 393 bp
ATGGTAACTCAACAGTTTGTGATTAAAGGAAAGAGAAGGCGCATATGGGGAGGAGCTTTTCTCTGTTGGGTTCTGTTAATGTTGGTCACTCCCAAAATTTCTCACTCCCCAAATCACCATCACTATGCTGACATGCGCAATTTCCTTGGAGTGCCCAACACATTGAATGTGATCACCAGTTTCCCATTCTTGGTTGTTGGGGTTCTGGGTTTTGTTCTCTGTGTCCAAGGAGGCTTTTTCAATATCAGTTTGCCAGGTGAAGTTTGGGGTTGGGCACTGTTCTATGCAGGAATAGCAGGGCTGGCTTTTGGGTCTGCTTATTATCATTTGAAGCCTGATGATAGTAGAGTGACTTGGGATACCTTGCCGGTTAGCATTTCAATTTCTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ceramidase

Protein Analysis

130

Amino Acids

14.53

Weight (kDa)

9.39

Isoelectric Point (pI)

38.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 137
AcsI RAATTY 1 cut(s) 96
AfiI CCNNNNNNNGG 1 cut(s) 190
AgsI TTSAA 4 cut(s) 166, 241, 331, 381
AjnI CCWGG 1 cut(s) 253
AluBI AGCT 1 cut(s) 56
AluI AGCT 1 cut(s) 56
ApoI RAATTY 1 cut(s) 96
AspLEI GCGC 2 cut(s) 42, 138
AsuHPI GGTGA 3 cut(s) 107, 166, 269
BaeGI GKGCMC 2 cut(s) 156, 277
BccI CCATC 1 cut(s) 126
BciT130I CCWGG 1 cut(s) 255
BciVI GTATCC 1 cut(s) 352
BclI TGATCA 1 cut(s) 171
BfaI CTAG 1 cut(s) 391
BfuI GTATCC 1 cut(s) 352
Bme1390I CCNGG 1 cut(s) 255
BmrFI CCNGG 1 cut(s) 255
BplI GAGNNNNNCTC 2 cut(s) 45, 77
BsaJI CCNNGG 2 cut(s) 145, 226
Bsc4I CCNNNNNNNGG 1 cut(s) 190
Bse118I RCCGGY 1 cut(s) 367
Bse1I ACTGG 1 cut(s) 177
BseBI CCWGG 1 cut(s) 255
BseDI CCNNGG 2 cut(s) 145, 226
BseLI CCNNNNNNNGG 1 cut(s) 190
BseNI ACTGG 1 cut(s) 177
BseRI GAGGAG 1 cut(s) 66
BseSI GKGCMC 2 cut(s) 156, 277
BsiSI CCGG 1 cut(s) 368
BslI CCNNNNNNNGG 1 cut(s) 190
Bsp1286I GDGCHC 2 cut(s) 156, 277
Bsp143I GATC 1 cut(s) 171
BsrFI RCCGGY 1 cut(s) 367
BsrI ACTGG 1 cut(s) 177
BssAI RCCGGY 1 cut(s) 367
BssECI CCNNGG 2 cut(s) 145, 226
BssMI GATC 1 cut(s) 171
BssT1I CCWWGG 2 cut(s) 145, 226
Bst2UI CCWGG 1 cut(s) 255
Bst4CI ACNGT 2 cut(s) 15, 279
BstC8I GCNNGC 1 cut(s) 303
BstHHI GCGC 2 cut(s) 42, 138
BstKTI GATC 1 cut(s) 174
BstMBI GATC 1 cut(s) 171
BstMWI GCNNNNNNNGC 2 cut(s) 293, 302
BstNI CCWGG 1 cut(s) 255
BstNSI RCATGY 1 cut(s) 136
BstSCI CCNGG 1 cut(s) 253
BstSLI GKGCMC 2 cut(s) 156, 277
BsuI GTATCC 1 cut(s) 352
BtsIMutI CAGTG 1 cut(s) 275
Cac8I GCNNGC 1 cut(s) 303
CfoI GCGC 2 cut(s) 42, 138
Cfr10I RCCGGY 1 cut(s) 367
CviAII CATG 1 cut(s) 133
CviJI RGCY 5 cut(s) 56, 234, 301, 305, 334
CviKI_1 RGCY 5 cut(s) 56, 234, 301, 305, 334
DpnI GATC 1 cut(s) 173
DpnII GATC 1 cut(s) 171
Eco130I CCWWGG 2 cut(s) 145, 226
EcoRII CCWGG 1 cut(s) 253
EcoT14I CCWWGG 2 cut(s) 145, 226
ErhI CCWWGG 2 cut(s) 145, 226
FaeI CATG 1 cut(s) 136
FaiI YATR 5 cut(s) 44, 46, 126, 134, 285
FatI CATG 1 cut(s) 132
FauNDI CATATG 1 cut(s) 44
FbaI TGATCA 1 cut(s) 171
FspBI CTAG 1 cut(s) 391
FspI TGCGCA 1 cut(s) 137
GlaI GCGC 2 cut(s) 41, 137
HapII CCGG 1 cut(s) 368
HhaI GCGC 2 cut(s) 42, 138
Hin1II CATG 1 cut(s) 136
Hin6I GCGC 2 cut(s) 40, 136
HinP1I GCGC 2 cut(s) 40, 136
HpaII CCGG 1 cut(s) 368
HphI GGTGA 3 cut(s) 107, 166, 269
HpyAV CCTTC 1 cut(s) 30
HpyCH4III ACNGT 2 cut(s) 15, 279
HpyCH4V TGCA 1 cut(s) 287
HpyF10VI GCNNNNNNNGC 2 cut(s) 293, 302
Hsp92II CATG 1 cut(s) 136
HspAI GCGC 2 cut(s) 40, 136
Ksp22I TGATCA 1 cut(s) 171
Kzo9I GATC 1 cut(s) 171
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 9 cut(s) 190, 191, 240, 267, 273, 282, 287, 348, 381
MaeI CTAG 1 cut(s) 391
MaeIII GTNAC 3 cut(s) 4, 85, 349
MalI GATC 1 cut(s) 173
MboI GATC 1 cut(s) 171
MhlI GDGCHC 2 cut(s) 156, 277
MluCI AATT 3 cut(s) 96, 139, 381
MnlI CCTC 2 cut(s) 44, 224
MseI TTAA 2 cut(s) 24, 77
MslI CAYNNNNRTG 1 cut(s) 123
MspI CCGG 1 cut(s) 368
MspR9I CCNGG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 255
MwoI GCNNNNNNNGC 2 cut(s) 293, 302
NdeI CATATG 1 cut(s) 44
NdeII GATC 1 cut(s) 171
NlaIII CATG 1 cut(s) 136
NmuCI GTSAC 2 cut(s) 85, 349
NsbI TGCGCA 1 cut(s) 137
NspI RCATGY 1 cut(s) 136
Psp6I CCWGG 1 cut(s) 253
PspGI CCWGG 1 cut(s) 253
RseI CAYNNNNRTG 1 cut(s) 123
SaqAI TTAA 2 cut(s) 24, 77
Sau3AI GATC 1 cut(s) 171
ScrFI CCNGG 1 cut(s) 255
SduI GDGCHC 2 cut(s) 156, 277
SetI ASST 3 cut(s) 58, 259, 365
SmiMI CAYNNNNRTG 1 cut(s) 123
Sse9I AATT 3 cut(s) 96, 139, 381
SspMI CTAG 1 cut(s) 391
StyD4I CCNGG 1 cut(s) 253
StyI CCWWGG 2 cut(s) 145, 226
TaaI ACNGT 2 cut(s) 15, 279
TasI AATT 3 cut(s) 96, 139, 381
Tru1I TTAA 2 cut(s) 24, 77
Tru9I TTAA 2 cut(s) 24, 77
TscAI CASTG 1 cut(s) 282
TseFI GTSAC 2 cut(s) 85, 349
Tsp45I GTSAC 2 cut(s) 85, 349
TspRI CASTG 1 cut(s) 282
XapI RAATTY 1 cut(s) 96
XceI RCATGY 1 cut(s) 136
XcmI CCANNNNNNNNNTGG 1 cut(s) 261
XspI CTAG 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.