Prupe.1G415100_v2.0.a1

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015556
Physical Location & Seq
Forward (+)
36098382 .. 36104593
6212 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G415100.1

Sequence Viewer

Length: 903 bp
ATGGAAAGGGACTGTCTTAGGCACACCCATACTAAAGACACCCACAATCCCAACACTCGAGACAAAACCGGAGGGGACGCCTCAGCCTCTCTGCTGTTGAGAGCGAGCCCCGATGCCATACGACACGCAACGACGTCGTCCGATTTCGTTTTGCAGTGGGGGAACCGCAAGCGCCTCAGGTGTATGAAGATCCAGGTCAAAGACAAGGGCAAAGACGACTCCGACGCCCCGGTTACCCGAACCACAGTCCGGGTCGACCGCCGGGTCGTCCGACCTGATAAGGACCCGGCCAATCAGCCTTCCACGGCCGGTAACTCTAATCAGACGAATGGGTATTTGAATCTCCGTCAACGGCCGTTATCTCCGCAGCAGCCGCCACTTCAGCGTGTTCTCAGAAACTCAGAGACCACAACAAGTGCCATGAGAGGCCAGAGCAACGGAGGCTTGAGGGGAATTGTTTCACCCGACAACAGAGGGGGTGCGCACGATAAGAAAGGCAACCACCACCATCACAACCACCACCACCATAATAATGAGAATAACAACACCAAGTCTGCAGCTTCTTCGGACACGGCGCACGATAGTAAAAAGGGGGGAGGTGGGTCTTCATCGGGAAGCGGCGAAGCAGCGTTGGCGCCACCGATGGTCTGGCCGCCGAAGTTCGTGATTGCTTTGACCAACAAAGAGAAAGAAGAGGACTTCATGGCAATCAAAGGGTCAAAATTGCCTCAGAGACCCAAGAAGAGAGCAAAGTTCATTCAACGCACCCTCAATCTGGTAAGCCCAGGAGCATGGCTCTGTGATCTGACCCTAGAACGGTACGAGGTCAGAGAGAAGAAGATTTCCAAGAAGAGACCAAGAGGGCTAAAGGCGATGGGCAACGTGGAGTCTGACTCTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

301

Amino Acids

33.21

Weight (kDa)

10.18

Isoelectric Point (pI)

41.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015556)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32200
malus_domestica MD08G1073700.v1.1
prunus_persica Prupe.1G415100_v2.0.a1
pyrus_communis pycom08g06100 pycom15g05800
rosa_chinensis RchiOBHm_Chr6g0310471
rosa_laevigata RLG00000010480 RLG00000018734
rosa_multiflora Rmu_sc0020729.1_g000006
rosa_rugosa Rorug06G0380600
rosa_samantha Rh4DG040600 Rh6AG494600 Rh6BG504300 Rh6CG509500 Rh6DG495500
rosa_wichuraiana Rw6G043020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 263
AatII GACGTC 1 cut(s) 137
Acc16I TGCGCA 1 cut(s) 483
AccB1I GGYRCC 1 cut(s) 634
AccI GTMKAC 1 cut(s) 255
AciI CCGC 6 cut(s) 166, 259, 365, 374, 618, 653
AclWI GGATC 1 cut(s) 184
AcoI YGGCCR 4 cut(s) 288, 306, 353, 650
AcuI CTGAAG 1 cut(s) 365
AcyI GRCGYC 4 cut(s) 78, 134, 225, 635
AfaI GTAC 1 cut(s) 821
AfiI CCNNNNNNNGG 3 cut(s) 249, 775, 816
AgsI TTSAA 2 cut(s) 340, 761
AjnI CCWGG 2 cut(s) 192, 784
AluBI AGCT 1 cut(s) 560
AluI AGCT 1 cut(s) 560
Alw26I GTCTC 4 cut(s) 54, 398, 727, 847
AlwI GGATC 1 cut(s) 184
Ama87I CYCGRG 1 cut(s) 57
AoxI GGCC 5 cut(s) 288, 306, 353, 427, 650
ApeKI GCWGC 4 cut(s) 367, 370, 557, 626
Asp700I GAANNNNTTC 1 cut(s) 457
AspLEI GCGC 4 cut(s) 174, 484, 577, 637
AspS9I GGNCC 1 cut(s) 283
AsuC2I CCSGG 4 cut(s) 230, 251, 263, 287
AsuHPI GGTGA 1 cut(s) 453
AvaI CYCGRG 1 cut(s) 57
AvaII GGWCC 1 cut(s) 283
AxyI CCTNAGG 1 cut(s) 176
BanI GGYRCC 1 cut(s) 634
BanII GRGCYC 1 cut(s) 110
BbsI GAAGAC 1 cut(s) 597
BbvCI CCTCAGC 1 cut(s) 82
BbvI GCAGC 4 cut(s) 379, 382, 569, 638
BccI CCATC 3 cut(s) 516, 637, 868
BceAI ACGGC 4 cut(s) 321, 340, 368, 588
BcgI CGANNNNNNTGC 4 cut(s) 117, 151, 546, 580
BciT130I CCWGG 2 cut(s) 194, 786
BcnI CCSGG 4 cut(s) 230, 251, 263, 287
BcoDI GTCTC 4 cut(s) 54, 398, 727, 847
BfaI CTAG 1 cut(s) 812
BfmI CTRYAG 1 cut(s) 555
BfoI RGCGCY 2 cut(s) 175, 638
BisI GCNGC 7 cut(s) 368, 371, 374, 558, 619, 627, 653
BlsI GCNGC 7 cut(s) 369, 372, 375, 559, 620, 628, 654
Bme1390I CCNGG 6 cut(s) 194, 230, 251, 263, 287, 786
Bme18I GGWCC 1 cut(s) 283
BmeT110I CYCGRG 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 283
BmiI GGNNCC 3 cut(s) 164, 285, 636
BmrFI CCNGG 6 cut(s) 194, 230, 251, 263, 287, 786
BmsI GCATC 1 cut(s) 103
BpiI GAAGAC 1 cut(s) 597
BplI GAGNNNNNCTC 3 cut(s) 780, 812, 878
Bpu10I CCTNAGC 1 cut(s) 82
BpuEI CTTGAG 1 cut(s) 466
BpuMI CCSGG 4 cut(s) 230, 251, 263, 287
BsaHI GRCGYC 4 cut(s) 78, 134, 225, 635
BsaI GGTCTC 3 cut(s) 398, 727, 847
BsaJI CCNNGG 3 cut(s) 228, 303, 784
BsaWI WCCGGW 1 cut(s) 68
Bsc4I CCNNNNNNNGG 3 cut(s) 249, 775, 816
Bse118I RCCGGY 1 cut(s) 308
Bse21I CCTNAGG 1 cut(s) 176
BseBI CCWGG 2 cut(s) 194, 786
BseDI CCNNGG 3 cut(s) 228, 303, 784
BseLI CCNNNNNNNGG 3 cut(s) 249, 775, 816
BseMII CTCAG 5 cut(s) 96, 190, 406, 414, 743
BseX3I CGGCCG 2 cut(s) 306, 353
BseXI GCAGC 4 cut(s) 379, 382, 569, 638
Bsh1285I CGRYCG 3 cut(s) 259, 309, 356
BshFI GGCC 5 cut(s) 290, 308, 355, 429, 652
BshNI GGYRCC 1 cut(s) 634
BsiEI CGRYCG 3 cut(s) 259, 309, 356
BsiHKCI CYCGRG 1 cut(s) 57
BsiSI CCGG 6 cut(s) 69, 230, 250, 262, 287, 309
BslFI GGGAC 2 cut(s) 23, 89
BslI CCNNNNNNNGG 3 cut(s) 249, 775, 816
BsmAI GTCTC 4 cut(s) 54, 398, 727, 847
BsmFI GGGAC 2 cut(s) 23, 89
BsnI GGCC 5 cut(s) 290, 308, 355, 429, 652
Bso31I GGTCTC 3 cut(s) 398, 727, 847
BsoBI CYCGRG 1 cut(s) 57
Bsp1286I GDGCHC 1 cut(s) 110
Bsp143I GATC 2 cut(s) 189, 802
BspACI CCGC 6 cut(s) 166, 259, 365, 374, 618, 653
BspANI GGCC 5 cut(s) 290, 308, 355, 429, 652
BspCNI CTCAG 5 cut(s) 95, 189, 405, 413, 742
BspLI GGNNCC 3 cut(s) 164, 285, 636
BspMAI CTGCAG 1 cut(s) 559
BspPI GGATC 1 cut(s) 184
BspT107I GGYRCC 1 cut(s) 634
BspTNI GGTCTC 3 cut(s) 398, 727, 847
BsrFI RCCGGY 1 cut(s) 308
BssAI RCCGGY 1 cut(s) 308
BssECI CCNNGG 3 cut(s) 228, 303, 784
BssMI GATC 2 cut(s) 189, 802
BssNI GRCGYC 4 cut(s) 78, 134, 225, 635
Bst2UI CCWGG 2 cut(s) 194, 786
Bst4CI ACNGT 3 cut(s) 14, 247, 819
Bst6I CTCTTC 3 cut(s) 687, 737, 845
BstACI GRCGYC 4 cut(s) 78, 134, 225, 635
BstC8I GCNNGC 2 cut(s) 106, 170
BstDEI CTNAG 6 cut(s) 17, 82, 176, 392, 400, 729
BstDSI CCRYGG 1 cut(s) 303
BstEII GGTNACC 1 cut(s) 232
BstH2I RGCGCY 2 cut(s) 175, 638
BstHHI GCGC 4 cut(s) 174, 484, 577, 637
BstKTI GATC 2 cut(s) 192, 805
BstMAI GTCTC 4 cut(s) 54, 398, 727, 847
BstMBI GATC 2 cut(s) 189, 802
BstMCI CGRYCG 3 cut(s) 259, 309, 356
BstMWI GCNNNNNNNGC 4 cut(s) 373, 382, 441, 632
BstNI CCWGG 2 cut(s) 194, 786
BstPI GGTNACC 1 cut(s) 232
BstSCI CCNGG 6 cut(s) 192, 228, 249, 261, 285, 784
BstSFI CTRYAG 1 cut(s) 555
BstV1I GCAGC 4 cut(s) 379, 382, 569, 638
BstV2I GAAGAC 1 cut(s) 597
BstX2I RGATCY 1 cut(s) 189
BstXI CCANNNNNNTGG 1 cut(s) 792
BstYI RGATCY 1 cut(s) 189
BstZI CGGCCG 2 cut(s) 306, 353
Bsu36I CCTNAGG 1 cut(s) 176
BsuRI GGCC 5 cut(s) 290, 308, 355, 429, 652
BtgI CCRYGG 1 cut(s) 303
BtgZI GCGATG 1 cut(s) 887
BtsI GCAGTG 1 cut(s) 161
BtsIMutI CAGTG 1 cut(s) 161
Cac8I GCNNGC 2 cut(s) 106, 170
CfoI GCGC 4 cut(s) 174, 484, 577, 637
Cfr10I RCCGGY 1 cut(s) 308
Cfr13I GGNCC 1 cut(s) 283
CseI GACGC 2 cut(s) 86, 233
Csp6I GTAC 1 cut(s) 820
CviAII CATG 3 cut(s) 421, 703, 792
CviQI GTAC 1 cut(s) 820
DdeI CTNAG 6 cut(s) 17, 82, 176, 392, 400, 729
DinI GGCGCC 1 cut(s) 636
DpnI GATC 2 cut(s) 191, 804
DpnII GATC 2 cut(s) 189, 802
DrdI GACNNNNNNGTC 1 cut(s) 263
DseDI GACNNNNNNGTC 1 cut(s) 263
EaeI YGGCCR 4 cut(s) 288, 306, 353, 650
EagI CGGCCG 2 cut(s) 306, 353
Eam1104I CTCTTC 3 cut(s) 687, 737, 845
EarI CTCTTC 3 cut(s) 687, 737, 845
EclXI CGGCCG 2 cut(s) 306, 353
Eco24I GRGCYC 1 cut(s) 110
Eco31I GGTCTC 3 cut(s) 398, 727, 847
Eco47I GGWCC 1 cut(s) 283
Eco52I CGGCCG 2 cut(s) 306, 353
Eco57I CTGAAG 1 cut(s) 365
Eco81I CCTNAGG 1 cut(s) 176
Eco88I CYCGRG 1 cut(s) 57
Eco91I GGTNACC 1 cut(s) 232
EcoO109I RGGNCCY 1 cut(s) 283
EcoO65I GGTNACC 1 cut(s) 232
EcoRII CCWGG 2 cut(s) 192, 784
EcoT38I GRGCYC 1 cut(s) 110
EgeI GGCGCC 1 cut(s) 636
EheI GGCGCC 1 cut(s) 636
FaeI CATG 3 cut(s) 424, 706, 795
FaiI YATR 7 cut(s) 30, 119, 185, 422, 528, 704, 793
FaqI GGGAC 2 cut(s) 23, 89
FatI CATG 3 cut(s) 420, 702, 791
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 7 cut(s) 368, 371, 374, 558, 619, 627, 653
FriOI GRGCYC 1 cut(s) 110
Fsp4HI GCNGC 7 cut(s) 368, 371, 374, 558, 619, 627, 653
FspAI RTGCGCAY 1 cut(s) 483
FspBI CTAG 1 cut(s) 812
FspI TGCGCA 1 cut(s) 483
GlaI GCGC 4 cut(s) 173, 483, 576, 636
GluI GCNGC 7 cut(s) 368, 371, 374, 558, 619, 627, 653
HaeII RGCGCY 2 cut(s) 175, 638
HaeIII GGCC 5 cut(s) 290, 308, 355, 429, 652
HapII CCGG 6 cut(s) 69, 230, 250, 262, 287, 309
HgaI GACGC 2 cut(s) 86, 233
HhaI GCGC 4 cut(s) 174, 484, 577, 637
Hin1I GRCGYC 4 cut(s) 78, 134, 225, 635
Hin1II CATG 3 cut(s) 424, 706, 795
Hin6I GCGC 4 cut(s) 172, 482, 575, 635
HinP1I GCGC 4 cut(s) 172, 482, 575, 635
HincII GTYRAC 2 cut(s) 256, 350
HindII GTYRAC 2 cut(s) 256, 350
HinfI GANTC 4 cut(s) 218, 340, 887, 893
HpaII CCGG 6 cut(s) 69, 230, 250, 262, 287, 309
HphI GGTGA 1 cut(s) 453
Hpy166II GTNNAC 2 cut(s) 256, 350
Hpy188III TCNNGA 3 cut(s) 59, 612, 664
Hpy8I GTNNAC 2 cut(s) 256, 350
Hpy99I CGWCG 3 cut(s) 136, 139, 227
HpyAV CCTTC 1 cut(s) 309
HpyCH4III ACNGT 3 cut(s) 14, 247, 819
HpyCH4IV ACGT 2 cut(s) 134, 882
HpyCH4V TGCA 2 cut(s) 154, 557
HpyF10VI GCNNNNNNNGC 4 cut(s) 373, 382, 441, 632
HpyF3I CTNAG 6 cut(s) 17, 82, 176, 392, 400, 729
HpySE526I ACGT 2 cut(s) 134, 882
Hsp92I GRCGYC 4 cut(s) 78, 134, 225, 635
Hsp92II CATG 3 cut(s) 424, 706, 795
HspAI GCGC 4 cut(s) 172, 482, 575, 635
KasI GGCGCC 1 cut(s) 634
Kzo9I GATC 2 cut(s) 189, 802
LmnI GCTCC 1 cut(s) 788
Lsp1109I GCAGC 4 cut(s) 379, 382, 569, 638
LweI GCATC 1 cut(s) 103
MaeI CTAG 1 cut(s) 812
MaeII ACGT 2 cut(s) 134, 882
MaeIII GTNAC 2 cut(s) 232, 311
MalI GATC 2 cut(s) 191, 804
MboI GATC 2 cut(s) 189, 802
MboII GAAGA 8 cut(s) 199, 555, 597, 704, 754, 847, 850, 862
MflI RGATCY 1 cut(s) 189
MhlI GDGCHC 1 cut(s) 110
MluCI AATT 2 cut(s) 453, 722
Mly113I GGCGCC 1 cut(s) 635
MlyI GAGTC 3 cut(s) 212, 887, 896
MmeI TCCRAC 2 cut(s) 246, 295
MroXI GAANNNNTTC 1 cut(s) 457
MslI CAYNNNNRTG 1 cut(s) 531
MspI CCGG 6 cut(s) 69, 230, 250, 262, 287, 309
MspR9I CCNGG 6 cut(s) 194, 230, 251, 263, 287, 786
MvaI CCWGG 2 cut(s) 194, 786
MwoI GCNNNNNNNGC 4 cut(s) 373, 382, 441, 632
NarI GGCGCC 1 cut(s) 635
NciI CCSGG 4 cut(s) 230, 251, 263, 287
NdeII GATC 2 cut(s) 189, 802
NlaIII CATG 3 cut(s) 424, 706, 795
NlaIV GGNNCC 3 cut(s) 164, 285, 636
NsbI TGCGCA 1 cut(s) 483
PaeR7I CTCGAG 1 cut(s) 57
PdmI GAANNNNTTC 1 cut(s) 457
PfeI GAWTC 1 cut(s) 340
PflFI GACNNNGTC 1 cut(s) 136
PkrI GCNGC 7 cut(s) 369, 372, 375, 559, 620, 628, 654
PleI GAGTC 3 cut(s) 212, 887, 895
PluTI GGCGCC 1 cut(s) 638
PpsI GAGTC 3 cut(s) 212, 887, 895
PpuMI RGGWCCY 1 cut(s) 283
Psp5II RGGWCCY 1 cut(s) 283
Psp6I CCWGG 2 cut(s) 192, 784
PspEI GGTNACC 1 cut(s) 232
PspGI CCWGG 2 cut(s) 192, 784
PspN4I GGNNCC 3 cut(s) 164, 285, 636
PspPI GGNCC 1 cut(s) 283
PspPPI RGGWCCY 1 cut(s) 283
PstI CTGCAG 1 cut(s) 559
PsuI RGATCY 1 cut(s) 189
PsyI GACNNNGTC 1 cut(s) 136
RsaI GTAC 1 cut(s) 821
RsaNI GTAC 1 cut(s) 820
RseI CAYNNNNRTG 1 cut(s) 531
SalI GTCGAC 1 cut(s) 254
SatI GCNGC 7 cut(s) 368, 371, 374, 558, 619, 627, 653
Sau3AI GATC 2 cut(s) 189, 802
Sau96I GGNCC 1 cut(s) 283
SchI GAGTC 3 cut(s) 212, 887, 896
ScrFI CCNGG 6 cut(s) 194, 230, 251, 263, 287, 786
SduI GDGCHC 1 cut(s) 110
SetI ASST 8 cut(s) 137, 182, 198, 277, 562, 601, 828, 885
SfaNI GCATC 1 cut(s) 103
SfcI CTRYAG 1 cut(s) 555
SfoI GGCGCC 1 cut(s) 636
Sfr274I CTCGAG 1 cut(s) 57
SinI GGWCC 1 cut(s) 283
SlaI CTCGAG 1 cut(s) 57
SmiMI CAYNNNNRTG 1 cut(s) 531
SmlI CTYRAG 2 cut(s) 57, 445
SmoI CTYRAG 2 cut(s) 57, 445
Sse9I AATT 2 cut(s) 453, 722
SsiI CCGC 6 cut(s) 166, 259, 365, 374, 618, 653
SspDI GGCGCC 1 cut(s) 634
SspMI CTAG 1 cut(s) 812
StyD4I CCNGG 6 cut(s) 192, 228, 249, 261, 285, 784
TaaI ACNGT 3 cut(s) 14, 247, 819
TaiI ACGT 2 cut(s) 137, 885
TaqI TCGA 2 cut(s) 58, 255
TasI AATT 2 cut(s) 453, 722
TauI GCSGC 3 cut(s) 376, 621, 655
TfiI GAWTC 1 cut(s) 340
TscAI CASTG 1 cut(s) 161
TseI GCWGC 4 cut(s) 367, 370, 557, 626
TspDTI ATGAA 4 cut(s) 200, 597, 691, 745
TspGWI ACGGA 2 cut(s) 335, 453
TspRI CASTG 1 cut(s) 161
Tth111I GACNNNGTC 1 cut(s) 136
VpaK11BI GGWCC 1 cut(s) 283
XcmI CCANNNNNNNNNTGG 1 cut(s) 645
XhoI CTCGAG 1 cut(s) 57
XmiI GTMKAC 1 cut(s) 255
XmnI GAANNNNTTC 1 cut(s) 457
XspI CTAG 1 cut(s) 812
ZraI GACGTC 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.