pycom15g05800

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0015556
Physical Location & Seq
Forward (+)
3518129 .. 3522826
4698 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g05800.4

Sequence Viewer

Length: 831 bp
ATGGAAAGGGACTGTACCAGCAGTAGAGATAGAACCGGCGGGGATGCATCCGCCTCCGCCGAGGTTGCGATCCGACACCAAACGACGTCGGACTTCGTTTTGCAGTGGGGGAACCGCAAGCGCCTCCGGTGTATGAAGATCCAGGTCAAGGAGAAGGACGACTCCAGCGGCGCCCCGGTTACCCGAACCACGGTCCGGGTTGATCGCCGGGTCGTTCGACCCGATAAGGACTTGGCCAATCAGCCTTCCACCACCGTTAATCAGACGAGTAACGGGTATTTGAATCTCCGTCAACGGCCGTTATCTCCGCAGCAATCGCTACCTCAGCGTATTCTCAGAAACTCAGAGATTACGAGCGCTGCTGCCATGAGAGGCCAGAGCAACGGCGGAGGAGGGGTGAGGGGAATTACCTCGCCGGACAGGGGTTCGCACGATAAGAAAAACCACCACCACCACCATAATGAGATTAATCATCACAACAAGTCTGCAGCGTCTTCGGACACGGCGCACGATAGCAAGAAGGGCGGGTCTTCGTCGGGGAGCGGAGAGGCGGCGGCGGGGGCACCGATGGTGTGGCCGCCGAAGTTCGTGATTGCTTTGACCAATAAAGAGAAAGAGGAGGACTTCATGGCGATTAAAGGGTCCAAATTGCCTCAGAGACCAAAGAAGCGTGCCAAGTTCATCCAACGCACCCTCAATCTTGTGAGCCCGGGAGCATGGCTTTGTGATCTGACGCTGGAACGGTACGAGGTCCGGGAGAAGAAGATTTCCAAAAAGAGACCAAGAGGGTTAAAGGCAATGGGCAATGTGGTGGAGTCTGACTCTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

277

Amino Acids

30.47

Weight (kDa)

10.16

Isoelectric Point (pI)

47.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015556)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32200
malus_domestica MD08G1073700.v1.1
prunus_persica Prupe.1G415100_v2.0.a1
pyrus_communis pycom08g06100 pycom15g05800
rosa_chinensis RchiOBHm_Chr6g0310471
rosa_laevigata RLG00000010480 RLG00000018734
rosa_multiflora Rmu_sc0020729.1_g000006
rosa_rugosa Rorug06G0380600
rosa_samantha Rh4DG040600 Rh6AG494600 Rh6BG504300 Rh6CG509500 Rh6DG495500
rosa_wichuraiana Rw6G043020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 89
AccB1I GGYRCC 2 cut(s) 170, 562
AccBSI CCGCTC 1 cut(s) 543
AclWI GGATC 2 cut(s) 64, 133
AcoI YGGCCR 3 cut(s) 234, 296, 575
AcyI GRCGYC 2 cut(s) 86, 171
AfaI GTAC 2 cut(s) 16, 746
AfeI AGCGCT 1 cut(s) 358
AfiI CCNNNNNNNGG 4 cut(s) 148, 190, 195, 422
AgsI TTSAA 1 cut(s) 283
AjnI CCWGG 1 cut(s) 141
Alw26I GTCTC 2 cut(s) 652, 772
AlwI GGATC 2 cut(s) 64, 133
Ama87I CYCGRG 1 cut(s) 709
Aor51HI AGCGCT 1 cut(s) 358
AoxI GGCC 4 cut(s) 234, 296, 373, 575
ApeKI GCWGC 4 cut(s) 310, 359, 362, 488
AseI ATTAAT 1 cut(s) 468
AspLEI GCGC 4 cut(s) 123, 173, 359, 508
AspS9I GGNCC 3 cut(s) 193, 642, 751
AsuC2I CCSGG 6 cut(s) 176, 197, 209, 710, 711, 755
AsuHPI GGTGA 1 cut(s) 409
AvaI CYCGRG 1 cut(s) 709
AvaII GGWCC 3 cut(s) 193, 642, 751
BaeGI GKGCMC 1 cut(s) 565
BalI TGGCCA 1 cut(s) 236
BanI GGYRCC 2 cut(s) 170, 562
BanII GRGCYC 1 cut(s) 710
BbsI GAAGAC 2 cut(s) 486, 522
BbvCI CCTCAGC 1 cut(s) 324
BbvI GCAGC 4 cut(s) 322, 346, 349, 500
BccI CCATC 1 cut(s) 562
BceAI ACGGC 4 cut(s) 283, 311, 400, 519
BcgI CGANNNNNNTGC 2 cut(s) 477, 511
BciT130I CCWGG 1 cut(s) 143
BcnI CCSGG 6 cut(s) 176, 197, 209, 710, 711, 755
BcoDI GTCTC 2 cut(s) 652, 772
BfmI CTRYAG 1 cut(s) 486
BfoI RGCGCY 3 cut(s) 124, 174, 360
BisI GCNGC 8 cut(s) 169, 311, 360, 363, 489, 552, 555, 578
BlsI GCNGC 8 cut(s) 170, 312, 361, 364, 490, 553, 556, 579
Bme1390I CCNGG 7 cut(s) 143, 176, 197, 209, 710, 711, 755
Bme18I GGWCC 3 cut(s) 193, 642, 751
BmeT110I CYCGRG 1 cut(s) 709
BmgT120I GGNCC 3 cut(s) 193, 642, 751
BmiI GGNNCC 4 cut(s) 113, 172, 564, 643
BmrFI CCNGG 7 cut(s) 143, 176, 197, 209, 710, 711, 755
BmsI GCATC 2 cut(s) 34, 56
BpiI GAAGAC 2 cut(s) 486, 522
BplI GAGNNNNNCTC 1 cut(s) 806
BpmI CTGGAG 1 cut(s) 148
Bpu10I CCTNAGC 1 cut(s) 324
BpuMI CCSGG 6 cut(s) 176, 197, 209, 710, 711, 755
BsaHI GRCGYC 2 cut(s) 86, 171
BsaI GGTCTC 2 cut(s) 652, 772
BsaJI CCNNGG 4 cut(s) 60, 174, 189, 709
BsaWI WCCGGW 1 cut(s) 126
BsaXI ACNNNNNCTCC 2 cut(s) 381, 411
Bsc4I CCNNNNNNNGG 4 cut(s) 148, 190, 195, 422
Bse118I RCCGGY 1 cut(s) 35
Bse3DI GCAATG 2 cut(s) 804, 811
BseBI CCWGG 1 cut(s) 143
BseDI CCNNGG 4 cut(s) 60, 174, 189, 709
BseGI GGATG 3 cut(s) 47, 49, 681
BseLI CCNNNNNNNGG 4 cut(s) 148, 190, 195, 422
BseMI GCAATG 2 cut(s) 804, 811
BseMII CTCAG 4 cut(s) 338, 349, 357, 668
BseRI GAGGAG 2 cut(s) 405, 632
BseSI GKGCMC 1 cut(s) 565
BseX3I CGGCCG 1 cut(s) 296
BseXI GCAGC 4 cut(s) 322, 346, 349, 500
Bsh1285I CGRYCG 1 cut(s) 299
BshFI GGCC 4 cut(s) 236, 298, 375, 577
BshNI GGYRCC 2 cut(s) 170, 562
BsiEI CGRYCG 1 cut(s) 299
BsiHKCI CYCGRG 1 cut(s) 709
BsiSI CCGG 8 cut(s) 36, 127, 176, 196, 208, 416, 710, 754
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 4 cut(s) 148, 190, 195, 422
BsmAI GTCTC 2 cut(s) 652, 772
BsmFI GGGAC 1 cut(s) 23
BsnI GGCC 4 cut(s) 236, 298, 375, 577
Bso31I GGTCTC 2 cut(s) 652, 772
BsoBI CYCGRG 1 cut(s) 709
Bsp1286I GDGCHC 2 cut(s) 565, 710
Bsp143I GATC 4 cut(s) 69, 138, 202, 727
BspANI GGCC 4 cut(s) 236, 298, 375, 577
BspCNI CTCAG 4 cut(s) 337, 348, 356, 667
BspLI GGNNCC 4 cut(s) 113, 172, 564, 643
BspMAI CTGCAG 1 cut(s) 490
BspPI GGATC 2 cut(s) 64, 133
BspT107I GGYRCC 2 cut(s) 170, 562
BspTNI GGTCTC 2 cut(s) 652, 772
BsrBI CCGCTC 1 cut(s) 543
BsrDI GCAATG 2 cut(s) 804, 811
BsrFI RCCGGY 1 cut(s) 35
BssAI RCCGGY 1 cut(s) 35
BssECI CCNNGG 4 cut(s) 60, 174, 189, 709
BssMI GATC 4 cut(s) 69, 138, 202, 727
BssNI GRCGYC 2 cut(s) 86, 171
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 4 cut(s) 14, 193, 256, 744
BstACI GRCGYC 2 cut(s) 86, 171
BstC8I GCNNGC 2 cut(s) 119, 672
BstDEI CTNAG 4 cut(s) 324, 335, 343, 654
BstDSI CCRYGG 1 cut(s) 189
BstEII GGTNACC 1 cut(s) 178
BstF5I GGATG 3 cut(s) 47, 49, 681
BstH2I RGCGCY 3 cut(s) 124, 174, 360
BstHHI GCGC 4 cut(s) 123, 173, 359, 508
BstKTI GATC 4 cut(s) 72, 141, 205, 730
BstMAI GTCTC 2 cut(s) 652, 772
BstMBI GATC 4 cut(s) 69, 138, 202, 727
BstMCI CGRYCG 1 cut(s) 299
BstMWI GCNNNNNNNGC 5 cut(s) 65, 316, 325, 522, 560
BstNI CCWGG 1 cut(s) 143
BstPI GGTNACC 1 cut(s) 178
BstSCI CCNGG 7 cut(s) 141, 174, 195, 207, 708, 709, 753
BstSFI CTRYAG 1 cut(s) 486
BstSLI GKGCMC 1 cut(s) 565
BstV1I GCAGC 4 cut(s) 322, 346, 349, 500
BstV2I GAAGAC 2 cut(s) 486, 522
BstX2I RGATCY 1 cut(s) 138
BstYI RGATCY 1 cut(s) 138
BstZI CGGCCG 1 cut(s) 296
BsuRI GGCC 4 cut(s) 236, 298, 375, 577
BtgI CCRYGG 1 cut(s) 189
BtsCI GGATG 3 cut(s) 47, 49, 681
BtsI GCAGTG 1 cut(s) 110
BtsIMutI CAGTG 1 cut(s) 110
Cac8I GCNNGC 2 cut(s) 119, 672
CfoI GCGC 4 cut(s) 123, 173, 359, 508
Cfr10I RCCGGY 1 cut(s) 35
Cfr13I GGNCC 3 cut(s) 193, 642, 751
Cfr9I CCCGGG 1 cut(s) 709
CpoI CGGWCCG 1 cut(s) 193
CseI GACGC 2 cut(s) 480, 742
Csp6I GTAC 2 cut(s) 15, 745
CspI CGGWCCG 1 cut(s) 193
CviAII CATG 3 cut(s) 367, 628, 717
CviJI RGCY 7 cut(s) 236, 244, 298, 375, 577, 708, 721
CviKI_1 RGCY 7 cut(s) 236, 244, 298, 375, 577, 708, 721
CviQI GTAC 2 cut(s) 15, 745
DdeI CTNAG 4 cut(s) 324, 335, 343, 654
DinI GGCGCC 1 cut(s) 172
DpnI GATC 4 cut(s) 71, 140, 204, 729
DpnII GATC 4 cut(s) 69, 138, 202, 727
EaeI YGGCCR 3 cut(s) 234, 296, 575
EagI CGGCCG 1 cut(s) 296
EciI GGCGGA 3 cut(s) 40, 46, 402
EclXI CGGCCG 1 cut(s) 296
Eco24I GRGCYC 1 cut(s) 710
Eco31I GGTCTC 2 cut(s) 652, 772
Eco47I GGWCC 3 cut(s) 193, 642, 751
Eco47III AGCGCT 1 cut(s) 358
Eco52I CGGCCG 1 cut(s) 296
Eco88I CYCGRG 1 cut(s) 709
Eco91I GGTNACC 1 cut(s) 178
EcoO65I GGTNACC 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 141
EcoT22I ATGCAT 1 cut(s) 49
EcoT38I GRGCYC 1 cut(s) 710
EgeI GGCGCC 1 cut(s) 172
EheI GGCGCC 1 cut(s) 172
FaeI CATG 3 cut(s) 370, 631, 720
FaiI YATR 5 cut(s) 134, 368, 459, 629, 718
FaqI GGGAC 1 cut(s) 23
FatI CATG 3 cut(s) 366, 627, 716
FauI CCCGC 3 cut(s) 32, 518, 550
Fnu4HI GCNGC 8 cut(s) 169, 311, 360, 363, 489, 552, 555, 578
FokI GGATG 3 cut(s) 34, 56, 668
FriOI GRGCYC 1 cut(s) 710
Fsp4HI GCNGC 8 cut(s) 169, 311, 360, 363, 489, 552, 555, 578
GlaI GCGC 4 cut(s) 122, 172, 358, 507
GluI GCNGC 8 cut(s) 169, 311, 360, 363, 489, 552, 555, 578
GsuI CTGGAG 1 cut(s) 148
HaeII RGCGCY 3 cut(s) 124, 174, 360
HaeIII GGCC 4 cut(s) 236, 298, 375, 577
HapII CCGG 8 cut(s) 36, 127, 176, 196, 208, 416, 710, 754
HgaI GACGC 2 cut(s) 480, 742
HhaI GCGC 4 cut(s) 123, 173, 359, 508
Hin1I GRCGYC 2 cut(s) 86, 171
Hin1II CATG 3 cut(s) 370, 631, 720
Hin6I GCGC 4 cut(s) 121, 171, 357, 506
HinP1I GCGC 4 cut(s) 121, 171, 357, 506
HincII GTYRAC 1 cut(s) 293
HindII GTYRAC 1 cut(s) 293
HinfI GANTC 4 cut(s) 161, 283, 815, 821
HpaII CCGG 8 cut(s) 36, 127, 176, 196, 208, 416, 710, 754
HphI GGTGA 1 cut(s) 409
Hpy166II GTNNAC 1 cut(s) 293
Hpy188III TCNNGA 1 cut(s) 589
Hpy8I GTNNAC 1 cut(s) 293
Hpy99I CGWCG 3 cut(s) 88, 91, 538
HpyAV CCTTC 3 cut(s) 148, 255, 514
HpyCH4III ACNGT 4 cut(s) 14, 193, 256, 744
HpyCH4IV ACGT 1 cut(s) 86
HpyCH4V TGCA 3 cut(s) 47, 103, 488
HpyF10VI GCNNNNNNNGC 5 cut(s) 65, 316, 325, 522, 560
HpyF3I CTNAG 4 cut(s) 324, 335, 343, 654
HpySE526I ACGT 1 cut(s) 86
Hsp92I GRCGYC 2 cut(s) 86, 171
Hsp92II CATG 3 cut(s) 370, 631, 720
HspAI GCGC 4 cut(s) 121, 171, 357, 506
KasI GGCGCC 1 cut(s) 170
Kzo9I GATC 4 cut(s) 69, 138, 202, 727
LmnI GCTCC 2 cut(s) 540, 713
Lsp1109I GCAGC 4 cut(s) 322, 346, 349, 500
LweI GCATC 2 cut(s) 34, 56
MaeII ACGT 1 cut(s) 86
MaeIII GTNAC 2 cut(s) 178, 269
MalI GATC 4 cut(s) 71, 140, 204, 729
MbiI CCGCTC 1 cut(s) 543
MboI GATC 4 cut(s) 69, 138, 202, 727
MboII GAAGA 5 cut(s) 148, 486, 522, 772, 775
MflI RGATCY 1 cut(s) 138
MhlI GDGCHC 2 cut(s) 565, 710
MlsI TGGCCA 1 cut(s) 236
MluCI AATT 2 cut(s) 405, 647
MluNI TGGCCA 1 cut(s) 236
Mly113I GGCGCC 1 cut(s) 171
MlyI GAGTC 3 cut(s) 155, 815, 824
MmeI TCCRAC 3 cut(s) 69, 97, 709
Mox20I TGGCCA 1 cut(s) 236
Mph1103I ATGCAT 1 cut(s) 49
MscI TGGCCA 1 cut(s) 236
MseI TTAA 4 cut(s) 258, 468, 636, 791
MslI CAYNNNNRTG 1 cut(s) 459
Msp20I TGGCCA 1 cut(s) 236
MspA1I CMGCKG 1 cut(s) 168
MspI CCGG 8 cut(s) 36, 127, 176, 196, 208, 416, 710, 754
MspR9I CCNGG 7 cut(s) 143, 176, 197, 209, 710, 711, 755
MvaI CCWGG 1 cut(s) 143
MwoI GCNNNNNNNGC 5 cut(s) 65, 316, 325, 522, 560
NarI GGCGCC 1 cut(s) 171
NciI CCSGG 6 cut(s) 176, 197, 209, 710, 711, 755
NdeII GATC 4 cut(s) 69, 138, 202, 727
NlaIII CATG 3 cut(s) 370, 631, 720
NlaIV GGNNCC 4 cut(s) 113, 172, 564, 643
NmeAIII GCCGAG 1 cut(s) 85
NsiI ATGCAT 1 cut(s) 49
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PfeI GAWTC 1 cut(s) 283
PfoI TCCNGGA 1 cut(s) 753
PkrI GCNGC 8 cut(s) 170, 312, 361, 364, 490, 553, 556, 579
PleI GAGTC 3 cut(s) 155, 815, 823
PluTI GGCGCC 1 cut(s) 174
PpsI GAGTC 3 cut(s) 155, 815, 823
PshBI ATTAAT 1 cut(s) 468
Psp6I CCWGG 1 cut(s) 141
PspEI GGTNACC 1 cut(s) 178
PspGI CCWGG 1 cut(s) 141
PspN4I GGNNCC 4 cut(s) 113, 172, 564, 643
PspPI GGNCC 3 cut(s) 193, 642, 751
PstI CTGCAG 1 cut(s) 490
PsuI RGATCY 1 cut(s) 138
RsaI GTAC 2 cut(s) 16, 746
RsaNI GTAC 2 cut(s) 15, 745
RseI CAYNNNNRTG 1 cut(s) 459
Rsr2I CGGWCCG 1 cut(s) 193
RsrII CGGWCCG 1 cut(s) 193
SaqAI TTAA 4 cut(s) 258, 468, 636, 791
SatI GCNGC 8 cut(s) 169, 311, 360, 363, 489, 552, 555, 578
Sau3AI GATC 4 cut(s) 69, 138, 202, 727
Sau96I GGNCC 3 cut(s) 193, 642, 751
SchI GAGTC 3 cut(s) 155, 815, 824
ScrFI CCNGG 7 cut(s) 143, 176, 197, 209, 710, 711, 755
SduI GDGCHC 2 cut(s) 565, 710
SetI ASST 6 cut(s) 66, 89, 147, 325, 413, 753
SfaNI GCATC 2 cut(s) 34, 56
SfcI CTRYAG 1 cut(s) 486
SfoI GGCGCC 1 cut(s) 172
SinI GGWCC 3 cut(s) 193, 642, 751
SmaI CCCGGG 1 cut(s) 711
SmiMI CAYNNNNRTG 1 cut(s) 459
Sse9I AATT 2 cut(s) 405, 647
SspDI GGCGCC 1 cut(s) 170
StyD4I CCNGG 7 cut(s) 141, 174, 195, 207, 708, 709, 753
TaaI ACNGT 4 cut(s) 14, 193, 256, 744
TaiI ACGT 1 cut(s) 89
TaqI TCGA 1 cut(s) 217
TasI AATT 2 cut(s) 405, 647
TauI GCSGC 4 cut(s) 171, 554, 557, 580
TfiI GAWTC 1 cut(s) 283
Tru1I TTAA 4 cut(s) 258, 468, 636, 791
Tru9I TTAA 4 cut(s) 258, 468, 636, 791
TscAI CASTG 1 cut(s) 110
TseI GCWGC 4 cut(s) 310, 359, 362, 488
TspDTI ATGAA 3 cut(s) 149, 616, 670
TspGWI ACGGA 1 cut(s) 278
TspMI CCCGGG 1 cut(s) 709
TspRI CASTG 1 cut(s) 110
VpaK11BI GGWCC 3 cut(s) 193, 642, 751
VspI ATTAAT 1 cut(s) 468
XmaI CCCGGG 1 cut(s) 709
ZraI GACGTC 1 cut(s) 87
Zsp2I ATGCAT 1 cut(s) 49
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.