RLG00000018734

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0015556
Physical Location & Seq
Forward (+)
34747763 .. 34749235
1473 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018734

Sequence Viewer

Length: 342 bp
ATGGAGAAGGAGGTGCACCAACCTCTAGCGTTGGCAGTAATTGCAGCTATGGACCTGGAGGTACCATCTTCTGAACTTATCTCTCCAAGTGAAGGCATGGAATTTGATAAGGAGGTGTACAAAAGGAGATGGAAAGAGACTGTGAGGCACGCCAATATTAACGACACTAAGAATTCTAGAGACAGAACCGGAGGGGTTAGCTCACTGCTGTTGAGATCGATTCTTGATAAAAAGACGACGTCCGAGTTCGTTTTGCAGTGGGGGAATCGCAAGCGCCTCCGGTGCATGAAGATCCAGGTCAAGGACGACTATAGTGGTGTCCCGGTGGCCGGAATTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

114

Amino Acids

12.9

Weight (kDa)

9.37

Isoelectric Point (pI)

63.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015556)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32200
malus_domestica MD08G1073700.v1.1
prunus_persica Prupe.1G415100_v2.0.a1
pyrus_communis pycom08g06100 pycom15g05800
rosa_chinensis RchiOBHm_Chr6g0310471
rosa_laevigata RLG00000010480 RLG00000018734
rosa_multiflora Rmu_sc0020729.1_g000006
rosa_rugosa Rorug06G0380600
rosa_samantha Rh4DG040600 Rh6AG494600 Rh6BG504300 Rh6CG509500 Rh6DG495500
rosa_wichuraiana Rw6G043020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 242
Acc65I GGTACC 1 cut(s) 61
AccB1I GGYRCC 1 cut(s) 61
AclWI GGATC 1 cut(s) 286
AcoI YGGCCR 1 cut(s) 327
AcsI RAATTY 3 cut(s) 101, 172, 333
AcyI GRCGYC 1 cut(s) 239
AfaI GTAC 2 cut(s) 63, 119
AfiI CCNNNNNNNGG 3 cut(s) 92, 301, 329
AjnI CCWGG 2 cut(s) 54, 294
AluBI AGCT 2 cut(s) 47, 201
AluI AGCT 2 cut(s) 47, 201
Alw21I GWGCWC 1 cut(s) 18
Alw26I GTCTC 2 cut(s) 131, 174
Alw44I GTGCAC 1 cut(s) 14
AlwI GGATC 1 cut(s) 286
AoxI GGCC 1 cut(s) 327
ApaLI GTGCAC 1 cut(s) 14
ApeKI GCWGC 1 cut(s) 44
ApoI RAATTY 3 cut(s) 101, 172, 333
Asp718I GGTACC 1 cut(s) 61
AspLEI GCGC 1 cut(s) 276
AspS9I GGNCC 1 cut(s) 52
AsuC2I CCSGG 1 cut(s) 323
AvaII GGWCC 1 cut(s) 52
BaeGI GKGCMC 1 cut(s) 18
BanI GGYRCC 1 cut(s) 61
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 56
BccI CCATC 2 cut(s) 73, 123
BciT130I CCWGG 2 cut(s) 56, 296
BcnI CCSGG 1 cut(s) 323
BcoDI GTCTC 2 cut(s) 131, 174
BfaI CTAG 2 cut(s) 26, 177
BfmI CTRYAG 1 cut(s) 310
BfoI RGCGCY 1 cut(s) 277
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
Bme1390I CCNGG 3 cut(s) 56, 296, 323
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 1 cut(s) 63
BmrFI CCNGG 3 cut(s) 56, 296, 323
BpmI CTGGAG 1 cut(s) 77
BpuMI CCSGG 1 cut(s) 323
Bsa29I ATCGAT 1 cut(s) 218
BsaHI GRCGYC 1 cut(s) 239
BsaWI WCCGGW 2 cut(s) 188, 279
Bsc4I CCNNNNNNNGG 3 cut(s) 92, 301, 329
BseBI CCWGG 2 cut(s) 56, 296
BseCI ATCGAT 1 cut(s) 218
BseLI CCNNNNNNNGG 3 cut(s) 92, 301, 329
BseSI GKGCMC 1 cut(s) 18
BseXI GCAGC 1 cut(s) 56
BshFI GGCC 1 cut(s) 329
BshNI GGYRCC 1 cut(s) 61
BshVI ATCGAT 1 cut(s) 218
BsiHKAI GWGCWC 1 cut(s) 18
BsiSI CCGG 4 cut(s) 189, 280, 323, 330
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 3 cut(s) 92, 301, 329
BsmAI GTCTC 2 cut(s) 131, 174
BsmFI GGGAC 1 cut(s) 305
BsnI GGCC 1 cut(s) 329
Bsp1286I GDGCHC 1 cut(s) 18
Bsp1407I TGTACA 1 cut(s) 117
Bsp143I GATC 2 cut(s) 215, 291
BspANI GGCC 1 cut(s) 329
BspDI ATCGAT 1 cut(s) 218
BspLI GGNNCC 1 cut(s) 63
BspPI GGATC 1 cut(s) 286
BspT107I GGYRCC 1 cut(s) 61
BsrGI TGTACA 1 cut(s) 117
BssMI GATC 2 cut(s) 215, 291
BssNI GRCGYC 1 cut(s) 239
Bst2UI CCWGG 2 cut(s) 56, 296
Bst4CI ACNGT 1 cut(s) 142
BstACI GRCGYC 1 cut(s) 239
BstAPI GCANNNNNTGC 1 cut(s) 41
BstAUI TGTACA 1 cut(s) 117
BstC8I GCNNGC 2 cut(s) 150, 272
BstDEI CTNAG 1 cut(s) 168
BstH2I RGCGCY 1 cut(s) 277
BstHHI GCGC 1 cut(s) 276
BstKTI GATC 2 cut(s) 218, 294
BstMAI GTCTC 2 cut(s) 131, 174
BstMBI GATC 2 cut(s) 215, 291
BstMWI GCNNNNNNNGC 2 cut(s) 41, 282
BstNI CCWGG 2 cut(s) 56, 296
BstSCI CCNGG 3 cut(s) 54, 294, 321
BstSFI CTRYAG 1 cut(s) 310
BstSLI GKGCMC 1 cut(s) 18
BstV1I GCAGC 1 cut(s) 56
BstX2I RGATCY 1 cut(s) 291
BstYI RGATCY 1 cut(s) 291
Bsu15I ATCGAT 1 cut(s) 218
BsuRI GGCC 1 cut(s) 329
BsuTUI ATCGAT 1 cut(s) 218
BtsI GCAGTG 2 cut(s) 203, 263
BtsIMutI CAGTG 2 cut(s) 203, 263
Cac8I GCNNGC 2 cut(s) 150, 272
CfoI GCGC 1 cut(s) 276
Cfr13I GGNCC 1 cut(s) 52
ClaI ATCGAT 1 cut(s) 218
Csp6I GTAC 2 cut(s) 62, 118
CviAII CATG 2 cut(s) 97, 286
CviJI RGCY 3 cut(s) 47, 201, 329
CviKI_1 RGCY 3 cut(s) 47, 201, 329
CviQI GTAC 2 cut(s) 62, 118
DdeI CTNAG 1 cut(s) 168
DpnI GATC 2 cut(s) 217, 293
DpnII GATC 2 cut(s) 215, 291
EaeI YGGCCR 1 cut(s) 327
Eco47I GGWCC 1 cut(s) 52
EcoRI GAATTC 2 cut(s) 172, 333
EcoRII CCWGG 2 cut(s) 54, 294
FaeI CATG 2 cut(s) 100, 289
FaiI YATR 4 cut(s) 50, 98, 287, 312
FaqI GGGAC 1 cut(s) 305
FatI CATG 2 cut(s) 96, 285
Fnu4HI GCNGC 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 45
FspBI CTAG 2 cut(s) 26, 177
GlaI GCGC 1 cut(s) 275
GluI GCNGC 1 cut(s) 45
GsuI CTGGAG 1 cut(s) 77
HaeII RGCGCY 1 cut(s) 277
HaeIII GGCC 1 cut(s) 329
HapII CCGG 4 cut(s) 189, 280, 323, 330
HhaI GCGC 1 cut(s) 276
Hin1I GRCGYC 1 cut(s) 239
Hin1II CATG 2 cut(s) 100, 289
Hin6I GCGC 1 cut(s) 274
HinP1I GCGC 1 cut(s) 274
HinfI GANTC 2 cut(s) 220, 265
HpaII CCGG 4 cut(s) 189, 280, 323, 330
Hpy166II GTNNAC 2 cut(s) 16, 118
Hpy188I TCNGA 2 cut(s) 73, 244
Hpy188III TCNNGA 2 cut(s) 177, 224
Hpy8I GTNNAC 2 cut(s) 16, 118
Hpy99I CGWCG 1 cut(s) 241
HpyAV CCTTC 1 cut(s) 86
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4IV ACGT 1 cut(s) 239
HpyCH4V TGCA 4 cut(s) 16, 44, 256, 285
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 282
HpyF3I CTNAG 1 cut(s) 168
HpySE526I ACGT 1 cut(s) 239
Hsp92I GRCGYC 1 cut(s) 239
Hsp92II CATG 2 cut(s) 100, 289
HspAI GCGC 1 cut(s) 274
KpnI GGTACC 1 cut(s) 65
Kzo9I GATC 2 cut(s) 215, 291
LpnPI CCDG 7 cut(s) 41, 68, 202, 281, 293, 308, 336
Lsp1109I GCAGC 1 cut(s) 56
MaeI CTAG 2 cut(s) 26, 177
MaeII ACGT 1 cut(s) 239
MalI GATC 2 cut(s) 217, 293
MboI GATC 2 cut(s) 215, 291
MboII GAAGA 2 cut(s) 60, 301
MflI RGATCY 1 cut(s) 291
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 4 cut(s) 39, 101, 172, 333
MnlI CCTC 7 cut(s) 4, 33, 52, 106, 138, 185, 287
MseI TTAA 1 cut(s) 159
MspI CCGG 4 cut(s) 189, 280, 323, 330
MspR9I CCNGG 3 cut(s) 56, 296, 323
MvaI CCWGG 2 cut(s) 56, 296
MwoI GCNNNNNNNGC 2 cut(s) 41, 282
NciI CCSGG 1 cut(s) 323
NdeII GATC 2 cut(s) 215, 291
NlaIII CATG 2 cut(s) 100, 289
NlaIV GGNNCC 1 cut(s) 63
PfeI GAWTC 2 cut(s) 220, 265
PflFI GACNNNGTC 1 cut(s) 238
PkrI GCNGC 1 cut(s) 46
Psp6I CCWGG 2 cut(s) 54, 294
PspGI CCWGG 2 cut(s) 54, 294
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 1 cut(s) 52
PsuI RGATCY 1 cut(s) 291
PsyI GACNNNGTC 1 cut(s) 238
RsaI GTAC 2 cut(s) 63, 119
RsaNI GTAC 2 cut(s) 62, 118
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 2 cut(s) 215, 291
Sau96I GGNCC 1 cut(s) 52
ScrFI CCNGG 3 cut(s) 56, 296, 323
SduI GDGCHC 1 cut(s) 18
SetI ASST 9 cut(s) 15, 25, 49, 57, 63, 117, 203, 242, 300
SfcI CTRYAG 1 cut(s) 310
SinI GGWCC 1 cut(s) 52
Sse9I AATT 4 cut(s) 39, 101, 172, 333
SspI AATATT 1 cut(s) 157
SspMI CTAG 2 cut(s) 26, 177
StyD4I CCNGG 3 cut(s) 54, 294, 321
TaaI ACNGT 1 cut(s) 142
TaiI ACGT 1 cut(s) 242
TaqI TCGA 2 cut(s) 218, 337
TasI AATT 4 cut(s) 39, 101, 172, 333
TatI WGTACW 1 cut(s) 117
TfiI GAWTC 2 cut(s) 220, 265
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TscAI CASTG 2 cut(s) 210, 263
TseI GCWGC 1 cut(s) 44
TspDTI ATGAA 1 cut(s) 302
TspRI CASTG 2 cut(s) 210, 263
Tth111I GACNNNGTC 1 cut(s) 238
VneI GTGCAC 1 cut(s) 14
VpaK11BI GGWCC 1 cut(s) 52
XapI RAATTY 3 cut(s) 101, 172, 333
XbaI TCTAGA 1 cut(s) 176
XspI CTAG 2 cut(s) 26, 177
ZraI GACGTC 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.