RLG00000010480

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015556
Physical Location & Seq
Forward (+)
1992609 .. 1998373
5765 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010480

Sequence Viewer

Length: 1134 bp
ATGGCCGTTGGATATCTGATCAAAGGTCGAGAATGCTCGGTGTTGGACGGATCTAATTCGAAGCTTCGTCTCTGTGTTCGTGTTCAGAGAGAAAACCAGAAGCTCGGAAAGATACATTCGAGGAGTTTCGGAACAGAGGTGATCGAGATTTTCAAGCTTAGAGGCACATTTTCAAGAGATTTGAGAGGCTTCGTGAAGAATCCAGCAAGACTTCCGAAAGGACGAAGTTTCTTCTGCGAGTTTAATCTTAGTAATACAGGTGTACAAAAGGAGATGGAAAGAGACTATGTGAGGCACGCCAATATTAACGACACCCAGAATTCTAGAGACAGAACCGGAGGGGATAGCTCACTGCTGTTGAGATCGAGTCCTGATAAAACGACGACGTCCGAGTTCGTTTTGCAGTGGGGGAATCGCAAGCGCCTCCGGTGCATGAAGATCCAGGTCAAGGACGACTCCAGTGGTGTCCCGGTTACCAGAACCACGGTTCGGGTAGACCGCCGGGTCATTCGACCGGACAAGGACTCGTCCAATCAGCCCTCTACCACCAATAATAGTAACGGGTATTTGAACCTCCGTCAACGACCGTTATCGCCGCAACAACCACCACCTCAGCGTGTTCTCAGAAACTCGGATACTTCAAGTGCAGGCATGAGAGGCCAGAGCAACGGAGCTATGAGGGGAATTATTTCGCCTGACAGGGGCGGCGTTGCGCACGATAAGAAAGGTACAAGTAACAACCACAATCATCACCATCACCATAATGACAATCATCACAACCACAAGTCCGCTGCGTCATCGGAGACGGCGCACGATAGCAAGAAGGGCGGCTCCTCATCGGGGAGCGGCGACGCGGCAGCAGCACCACCGATGGTGTGGCCGCCCAAGTTCGTGATTGCCTTGACCAACAAAGAGAAGGAAGAGGATTTCATGGCCATTAAGGGATCCAAGCTCCCTCAGAGACCCAAAAAGAGAGCAAAGATCATCCAACGCACCCTCAATCTCGTAAGCCCGGGTGCATGGCTGTGTGATCTGACGCTGGAACGGTACGAGGTCAGAGAGAAGAAGATCTCCAAGAAGAGACCGAGAGGATTGAAGGCGATGGGCACCATGGTGGAGTCGGACTCGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

378

Amino Acids

42.17

Weight (kDa)

10.31

Isoelectric Point (pI)

46.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1639 PF07797 301 - 350 8.2e-23 Protein of unknown function (DUF1639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015556)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32200
malus_domestica MD08G1073700.v1.1
prunus_persica Prupe.1G415100_v2.0.a1
pyrus_communis pycom08g06100 pycom15g05800
rosa_chinensis RchiOBHm_Chr6g0310471
rosa_laevigata RLG00000010480 RLG00000018734
rosa_multiflora Rmu_sc0020729.1_g000006
rosa_rugosa Rorug06G0380600
rosa_samantha Rh4DG040600 Rh6AG494600 Rh6BG504300 Rh6CG509500 Rh6DG495500
rosa_wichuraiana Rw6G043020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 503
AatII GACGTC 1 cut(s) 389
Acc16I TGCGCA 1 cut(s) 714
AccB1I GGYRCC 1 cut(s) 1106
AccBSI CCGCTC 1 cut(s) 846
AccI GTMKAC 1 cut(s) 495
AccII CGCG 1 cut(s) 854
AciI CCGC 8 cut(s) 499, 596, 705, 789, 828, 846, 854, 881
AclWI GGATC 4 cut(s) 58, 433, 939, 952
AcoI YGGCCR 3 cut(s) 3, 878, 933
AcsI RAATTY 1 cut(s) 319
AcyI GRCGYC 1 cut(s) 386
AfaI GTAC 3 cut(s) 264, 730, 1049
AfiI CCNNNNNNNGG 4 cut(s) 448, 489, 701, 840
AgsI TTSAA 5 cut(s) 154, 174, 571, 642, 1096
AjnI CCWGG 1 cut(s) 441
AleI CACNNNNGTG 1 cut(s) 1112
AluBI AGCT 6 cut(s) 64, 103, 157, 348, 674, 952
AluI AGCT 6 cut(s) 64, 103, 157, 348, 674, 952
Alw26I GTCTC 6 cut(s) 74, 276, 321, 797, 955, 1075
AlwI GGATC 4 cut(s) 58, 433, 939, 952
Ama87I CYCGRG 1 cut(s) 1012
AoxI GGCC 4 cut(s) 3, 658, 878, 933
ApeKI GCWGC 3 cut(s) 791, 857, 860
ApoI RAATTY 1 cut(s) 319
Asp700I GAANNNNTTC 1 cut(s) 688
AspLEI GCGC 3 cut(s) 423, 715, 811
AsuC2I CCSGG 4 cut(s) 470, 503, 1013, 1014
AsuHPI GGTGA 3 cut(s) 151, 743, 749
AsuII TTCGAA 1 cut(s) 59
AvaI CYCGRG 1 cut(s) 1012
BaeGI GKGCMC 1 cut(s) 1109
BalI TGGCCA 1 cut(s) 935
BamHI GGATCC 1 cut(s) 944
BanI GGYRCC 1 cut(s) 1106
BbvCI CCTCAGC 1 cut(s) 612
BbvI GCAGC 3 cut(s) 778, 869, 872
BccI CCATC 4 cut(s) 268, 762, 865, 1096
BceAI ACGGC 1 cut(s) 822
BciT130I CCWGG 1 cut(s) 443
BciVI GTATCC 1 cut(s) 628
BclI TGATCA 1 cut(s) 18
BcnI CCSGG 4 cut(s) 470, 503, 1013, 1014
BcoDI GTCTC 6 cut(s) 74, 276, 321, 797, 955, 1075
BfaI CTAG 1 cut(s) 324
BfoI RGCGCY 1 cut(s) 424
BfuI GTATCC 1 cut(s) 628
BglII AGATCT 1 cut(s) 1068
BisI GCNGC 9 cut(s) 596, 706, 792, 829, 847, 855, 858, 861, 881
BlsI GCNGC 9 cut(s) 597, 707, 793, 830, 848, 856, 859, 862, 882
Bme1390I CCNGG 5 cut(s) 443, 470, 503, 1013, 1014
BmeT110I CYCGRG 1 cut(s) 1012
BmiI GGNNCC 3 cut(s) 832, 946, 1108
BmrFI CCNGG 5 cut(s) 443, 470, 503, 1013, 1014
BplI GAGNNNNNCTC 1 cut(s) 1109
BpmI CTGGAG 1 cut(s) 442
Bpu10I CCTNAGC 1 cut(s) 612
Bpu14I TTCGAA 1 cut(s) 59
BpuMI CCSGG 4 cut(s) 470, 503, 1013, 1014
BsaHI GRCGYC 1 cut(s) 386
BsaI GGTCTC 2 cut(s) 955, 1075
BsaJI CCNNGG 3 cut(s) 483, 1012, 1110
BsaWI WCCGGW 3 cut(s) 335, 426, 514
Bsc4I CCNNNNNNNGG 4 cut(s) 448, 489, 701, 840
Bse1I ACTGG 1 cut(s) 459
BseBI CCWGG 1 cut(s) 443
BseDI CCNNGG 3 cut(s) 483, 1012, 1110
BseGI GGATG 1 cut(s) 984
BseLI CCNNNNNNNGG 4 cut(s) 448, 489, 701, 840
BseMII CTCAG 3 cut(s) 626, 637, 971
BseNI ACTGG 1 cut(s) 459
BseRI GAGGAG 2 cut(s) 136, 823
BseSI GKGCMC 1 cut(s) 1109
BseXI GCAGC 3 cut(s) 778, 869, 872
BsgI GTGCAG 1 cut(s) 666
Bsh1236I CGCG 1 cut(s) 854
Bsh1285I CGRYCG 2 cut(s) 515, 587
BshFI GGCC 4 cut(s) 5, 660, 880, 935
BshNI GGYRCC 1 cut(s) 1106
BsiEI CGRYCG 2 cut(s) 515, 587
BsiHKCI CYCGRG 1 cut(s) 1012
BsiSI CCGG 6 cut(s) 336, 427, 470, 502, 515, 1013
BslFI GGGAC 1 cut(s) 452
BslI CCNNNNNNNGG 4 cut(s) 448, 489, 701, 840
BsmAI GTCTC 6 cut(s) 74, 276, 321, 797, 955, 1075
BsmBI CGTCTC 2 cut(s) 74, 797
BsmFI GGGAC 1 cut(s) 452
BsmI GAATGC 1 cut(s) 38
BsnI GGCC 4 cut(s) 5, 660, 880, 935
Bso31I GGTCTC 2 cut(s) 955, 1075
BsoBI CYCGRG 1 cut(s) 1012
Bsp119I TTCGAA 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 1109
Bsp1407I TGTACA 1 cut(s) 262
Bsp143I GATC 9 cut(s) 18, 50, 141, 362, 438, 944, 981, 1030, 1068
Bsp19I CCATGG 1 cut(s) 1110
BspACI CCGC 8 cut(s) 499, 596, 705, 789, 828, 846, 854, 881
BspANI GGCC 4 cut(s) 5, 660, 880, 935
BspCNI CTCAG 3 cut(s) 625, 636, 970
BspFNI CGCG 1 cut(s) 854
BspLI GGNNCC 3 cut(s) 832, 946, 1108
BspPI GGATC 4 cut(s) 58, 433, 939, 952
BspT104I TTCGAA 1 cut(s) 59
BspT107I GGYRCC 1 cut(s) 1106
BspTNI GGTCTC 2 cut(s) 955, 1075
BsrBI CCGCTC 1 cut(s) 846
BsrGI TGTACA 1 cut(s) 262
BsrI ACTGG 1 cut(s) 459
BssECI CCNNGG 3 cut(s) 483, 1012, 1110
BssMI GATC 9 cut(s) 18, 50, 141, 362, 438, 944, 981, 1030, 1068
BssNI GRCGYC 1 cut(s) 386
BssT1I CCWWGG 1 cut(s) 1110
Bst2UI CCWGG 1 cut(s) 443
Bst4CI ACNGT 3 cut(s) 487, 588, 1047
Bst6I CTCTTC 2 cut(s) 915, 1073
BstACI GRCGYC 1 cut(s) 386
BstAUI TGTACA 1 cut(s) 262
BstBI TTCGAA 1 cut(s) 59
BstC8I GCNNGC 3 cut(s) 297, 419, 649
BstDEI CTNAG 5 cut(s) 158, 248, 612, 623, 957
BstDSI CCRYGG 2 cut(s) 483, 1110
BstEII GGTNACC 1 cut(s) 472
BstF5I GGATG 1 cut(s) 984
BstFNI CGCG 1 cut(s) 854
BstH2I RGCGCY 1 cut(s) 424
BstHHI GCGC 3 cut(s) 423, 715, 811
BstKTI GATC 9 cut(s) 21, 53, 144, 365, 441, 947, 984, 1033, 1071
BstMAI GTCTC 6 cut(s) 74, 276, 321, 797, 955, 1075
BstMBI GATC 9 cut(s) 18, 50, 141, 362, 438, 944, 981, 1030, 1068
BstMCI CGRYCG 2 cut(s) 515, 587
BstMWI GCNNNNNNNGC 4 cut(s) 429, 657, 825, 860
BstNI CCWGG 1 cut(s) 443
BstPI GGTNACC 1 cut(s) 472
BstSCI CCNGG 5 cut(s) 441, 468, 501, 1011, 1012
BstSLI GKGCMC 1 cut(s) 1109
BstUI CGCG 1 cut(s) 854
BstV1I GCAGC 3 cut(s) 778, 869, 872
BstX2I RGATCY 4 cut(s) 50, 438, 944, 1068
BstYI RGATCY 4 cut(s) 50, 438, 944, 1068
BsuI GTATCC 1 cut(s) 628
BsuRI GGCC 4 cut(s) 5, 660, 880, 935
BtgI CCRYGG 2 cut(s) 483, 1110
BtgZI GCGATG 1 cut(s) 1115
BtsCI GGATG 1 cut(s) 984
BtsI GCAGTG 2 cut(s) 350, 410
BtsIMutI CAGTG 3 cut(s) 350, 410, 466
Cac8I GCNNGC 3 cut(s) 297, 419, 649
CfoI GCGC 3 cut(s) 423, 715, 811
Cfr9I CCCGGG 1 cut(s) 1012
CseI GACGC 3 cut(s) 783, 860, 1045
Csp6I GTAC 3 cut(s) 263, 729, 1048
CviAII CATG 5 cut(s) 433, 652, 931, 1020, 1111
CviQI GTAC 3 cut(s) 263, 729, 1048
DdeI CTNAG 5 cut(s) 158, 248, 612, 623, 957
DpnI GATC 9 cut(s) 20, 52, 143, 364, 440, 946, 983, 1032, 1070
DpnII GATC 9 cut(s) 18, 50, 141, 362, 438, 944, 981, 1030, 1068
DrdI GACNNNNNNGTC 1 cut(s) 503
DseDI GACNNNNNNGTC 1 cut(s) 503
EaeI YGGCCR 3 cut(s) 3, 878, 933
Eam1104I CTCTTC 2 cut(s) 915, 1073
EarI CTCTTC 2 cut(s) 915, 1073
Eco130I CCWWGG 1 cut(s) 1110
Eco31I GGTCTC 2 cut(s) 955, 1075
Eco32I GATATC 1 cut(s) 14
Eco88I CYCGRG 1 cut(s) 1012
Eco91I GGTNACC 1 cut(s) 472
EcoO65I GGTNACC 1 cut(s) 472
EcoRI GAATTC 1 cut(s) 319
EcoRII CCWGG 1 cut(s) 441
EcoRV GATATC 1 cut(s) 14
EcoT14I CCWWGG 1 cut(s) 1110
ErhI CCWWGG 1 cut(s) 1110
Esp3I CGTCTC 2 cut(s) 74, 797
FaeI CATG 5 cut(s) 436, 655, 934, 1023, 1114
FaiI YATR 8 cut(s) 288, 434, 653, 677, 762, 932, 1021, 1112
FaqI GGGAC 1 cut(s) 452
FatI CATG 5 cut(s) 432, 651, 930, 1019, 1110
FbaI TGATCA 1 cut(s) 18
FblI GTMKAC 1 cut(s) 495
Fnu4HI GCNGC 9 cut(s) 596, 706, 792, 829, 847, 855, 858, 861, 881
FokI GGATG 1 cut(s) 971
Fsp4HI GCNGC 9 cut(s) 596, 706, 792, 829, 847, 855, 858, 861, 881
FspBI CTAG 1 cut(s) 324
FspI TGCGCA 1 cut(s) 714
GlaI GCGC 3 cut(s) 422, 714, 810
GluI GCNGC 9 cut(s) 596, 706, 792, 829, 847, 855, 858, 861, 881
GsuI CTGGAG 1 cut(s) 442
HaeII RGCGCY 1 cut(s) 424
HaeIII GGCC 4 cut(s) 5, 660, 880, 935
HapII CCGG 6 cut(s) 336, 427, 470, 502, 515, 1013
HgaI GACGC 3 cut(s) 783, 860, 1045
HhaI GCGC 3 cut(s) 423, 715, 811
Hin1I GRCGYC 1 cut(s) 386
Hin1II CATG 5 cut(s) 436, 655, 934, 1023, 1114
Hin6I GCGC 3 cut(s) 421, 713, 809
HinP1I GCGC 3 cut(s) 421, 713, 809
HincII GTYRAC 1 cut(s) 581
HindII GTYRAC 1 cut(s) 581
HindIII AAGCTT 2 cut(s) 62, 155
HinfI GANTC 7 cut(s) 199, 367, 412, 455, 524, 1118, 1124
HpaII CCGG 6 cut(s) 336, 427, 470, 502, 515, 1013
HphI GGTGA 3 cut(s) 151, 743, 749
Hpy166II GTNNAC 3 cut(s) 263, 496, 581
Hpy188III TCNNGA 7 cut(s) 29, 145, 174, 193, 324, 371, 892
Hpy8I GTNNAC 3 cut(s) 263, 496, 581
Hpy99I CGWCG 3 cut(s) 385, 388, 854
HpyAV CCTTC 3 cut(s) 817, 910, 1090
HpyCH4III ACNGT 3 cut(s) 487, 588, 1047
HpyCH4IV ACGT 1 cut(s) 386
HpyCH4V TGCA 4 cut(s) 403, 432, 647, 1019
HpyF10VI GCNNNNNNNGC 4 cut(s) 429, 657, 825, 860
HpyF3I CTNAG 5 cut(s) 158, 248, 612, 623, 957
HpySE526I ACGT 1 cut(s) 386
Hsp92I GRCGYC 1 cut(s) 386
Hsp92II CATG 5 cut(s) 436, 655, 934, 1023, 1114
HspAI GCGC 3 cut(s) 421, 713, 809
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 9 cut(s) 18, 50, 141, 362, 438, 944, 981, 1030, 1068
LmnI GCTCC 4 cut(s) 671, 836, 843, 957
Lsp1109I GCAGC 3 cut(s) 778, 869, 872
MaeI CTAG 1 cut(s) 324
MaeII ACGT 1 cut(s) 386
MaeIII GTNAC 3 cut(s) 472, 557, 734
MalI GATC 9 cut(s) 20, 52, 143, 364, 440, 946, 983, 1032, 1070
MbiI CCGCTC 1 cut(s) 846
MboI GATC 9 cut(s) 18, 50, 141, 362, 438, 944, 981, 1030, 1068
MboII GAAGA 7 cut(s) 208, 223, 448, 932, 1075, 1078, 1090
MflI RGATCY 4 cut(s) 50, 438, 944, 1068
MhlI GDGCHC 1 cut(s) 1109
MlsI TGGCCA 1 cut(s) 935
MluCI AATT 3 cut(s) 55, 319, 684
MluNI TGGCCA 1 cut(s) 935
MlyI GAGTC 5 cut(s) 376, 449, 518, 1118, 1127
MmeI TCCRAC 3 cut(s) 24, 1012, 1101
Mox20I TGGCCA 1 cut(s) 935
MroXI GAANNNNTTC 1 cut(s) 688
MscI TGGCCA 1 cut(s) 935
MseI TTAA 3 cut(s) 243, 306, 939
MslI CAYNNNNRTG 3 cut(s) 762, 1024, 1112
Msp20I TGGCCA 1 cut(s) 935
MspA1I CMGCKG 1 cut(s) 791
MspI CCGG 6 cut(s) 336, 427, 470, 502, 515, 1013
MspR9I CCNGG 5 cut(s) 443, 470, 503, 1013, 1014
Mva1269I GAATGC 1 cut(s) 38
MvaI CCWGG 1 cut(s) 443
MvnI CGCG 1 cut(s) 854
MwoI GCNNNNNNNGC 4 cut(s) 429, 657, 825, 860
NciI CCSGG 4 cut(s) 470, 503, 1013, 1014
NcoI CCATGG 1 cut(s) 1110
NdeII GATC 9 cut(s) 18, 50, 141, 362, 438, 944, 981, 1030, 1068
NlaIII CATG 5 cut(s) 436, 655, 934, 1023, 1114
NlaIV GGNNCC 3 cut(s) 832, 946, 1108
NsbI TGCGCA 1 cut(s) 714
NspV TTCGAA 1 cut(s) 59
OliI CACNNNNGTG 1 cut(s) 1112
PctI GAATGC 1 cut(s) 38
PdmI GAANNNNTTC 1 cut(s) 688
PfeI GAWTC 2 cut(s) 199, 412
PflFI GACNNNGTC 1 cut(s) 385
PkrI GCNGC 9 cut(s) 597, 707, 793, 830, 848, 856, 859, 862, 882
PleI GAGTC 5 cut(s) 375, 449, 518, 1118, 1126
PpsI GAGTC 5 cut(s) 375, 449, 518, 1118, 1126
Psp6I CCWGG 1 cut(s) 441
PspEI GGTNACC 1 cut(s) 472
PspGI CCWGG 1 cut(s) 441
PspN4I GGNNCC 3 cut(s) 832, 946, 1108
PsuI RGATCY 4 cut(s) 50, 438, 944, 1068
PsyI GACNNNGTC 1 cut(s) 385
RsaI GTAC 3 cut(s) 264, 730, 1049
RsaNI GTAC 3 cut(s) 263, 729, 1048
RseI CAYNNNNRTG 3 cut(s) 762, 1024, 1112
SaqAI TTAA 3 cut(s) 243, 306, 939
SatI GCNGC 9 cut(s) 596, 706, 792, 829, 847, 855, 858, 861, 881
Sau3AI GATC 9 cut(s) 18, 50, 141, 362, 438, 944, 981, 1030, 1068
SchI GAGTC 5 cut(s) 376, 449, 518, 1118, 1127
ScrFI CCNGG 5 cut(s) 443, 470, 503, 1013, 1014
SduI GDGCHC 1 cut(s) 1109
SfuI TTCGAA 1 cut(s) 59
SmaI CCCGGG 1 cut(s) 1014
SmiMI CAYNNNNRTG 3 cut(s) 762, 1024, 1112
Sse9I AATT 3 cut(s) 55, 319, 684
SsiI CCGC 8 cut(s) 499, 596, 705, 789, 828, 846, 854, 881
SspI AATATT 1 cut(s) 304
SspMI CTAG 1 cut(s) 324
StyD4I CCNGG 5 cut(s) 441, 468, 501, 1011, 1012
StyI CCWWGG 1 cut(s) 1110
TaaI ACNGT 3 cut(s) 487, 588, 1047
TaiI ACGT 1 cut(s) 389
TaqI TCGA 6 cut(s) 28, 59, 119, 144, 365, 511
TaqII GACCGA 1 cut(s) 1099
TasI AATT 3 cut(s) 55, 319, 684
TatI WGTACW 1 cut(s) 262
TauI GCSGC 6 cut(s) 598, 708, 831, 849, 857, 883
TfiI GAWTC 2 cut(s) 199, 412
Tru1I TTAA 3 cut(s) 243, 306, 939
Tru9I TTAA 3 cut(s) 243, 306, 939
TscAI CASTG 3 cut(s) 357, 410, 466
TseI GCWGC 3 cut(s) 791, 857, 860
TspDTI ATGAA 2 cut(s) 449, 919
TspGWI ACGGA 3 cut(s) 63, 566, 684
TspMI CCCGGG 1 cut(s) 1012
TspRI CASTG 3 cut(s) 357, 410, 466
Tth111I GACNNNGTC 1 cut(s) 385
XapI RAATTY 1 cut(s) 319
XbaI TCTAGA 1 cut(s) 323
XcmI CCANNNNNNNNNTGG 1 cut(s) 873
XmaI CCCGGG 1 cut(s) 1012
XmiI GTMKAC 1 cut(s) 495
XmnI GAANNNNTTC 1 cut(s) 688
XspI CTAG 1 cut(s) 324
ZraI GACGTC 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.