RchiOBHm_Chr6g0310471

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0015556
Physical Location & Seq
Reverse (-)
67809201 .. 67814856
5656 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27920

Sequence Viewer

Length: 864 bp
ATGGAAAGAGAATATGTGAGGCACGCCAATATTAACGACACCAAGAATTCTAGAGACAGAACCGGAGGGGATAGCTCACTGCTGTTGAGATCGAGTCCTGATAAAACGACGACGTCCGAGTTCGTTTTGCAGTGGGGGAATCGCAAGCGCCTCCGGTGCATGAAGATCCAGGTCAAGGACGACTCCAGTGGTGTCCCGGTTACCAGAACCACGGTTCGGGTAGACCGCCGGGTCATTCGACCGGACAAGGACTCGTCCAATCAGCCCTCTACCACCAATAATAGCAACGGGTATTTGAACCTCCGTCAACGACCGTTATCGCCGCAACAACCACCACCTCAGCGTGTTCTCAGAAACTCGGAGACTTCAAGTGCAGGCATGAGAGGCCAGAGCAACGGAGCTATGAGGGGAATTATTTCGCCTGACAGGGGCGGCGTTGCGCACGATAAGAAAGGTACAACTAACAACCACAATCATCACCACCACCACCATAATGACAATCATCACAACCACAAGTCCGCTGCGTCATCGGAGACGGCGCACGATAGCAAGAAGGGCGGCTCCTCATCGGGGAGCGGCGACGCGGCAGCAGCACCACCGATGGTGTGGCCGCCCAAGTTCGTGATTGCCTTGACCAACAAAGAGAAGGAAGAGGATTTCATGGCCATTAAGGGATCCAAGCTCCCTCAGAGACCCAAAAAGAGAGCAAAGATCATCCAACGCACCCTCAATCTCGTAAGCCCGGGTGCATGGCTGTGTGATCTGACGCTGGAACGGTACGAGGTCAGAGAGAAGAAGATCTCCAAGAAGAGACCGAGAGGATTGAAGGCGATGGGCACTATGGTGGAATCGGACTCGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

287

Amino Acids

32.01

Weight (kDa)

10.27

Isoelectric Point (pI)

51.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1639 PF07797 211 - 260 5.5e-23 Protein of unknown function (DUF1639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015556)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g32200
malus_domestica MD08G1073700.v1.1
prunus_persica Prupe.1G415100_v2.0.a1
pyrus_communis pycom08g06100 pycom15g05800
rosa_chinensis RchiOBHm_Chr6g0310471
rosa_laevigata RLG00000010480 RLG00000018734
rosa_multiflora Rmu_sc0020729.1_g000006
rosa_rugosa Rorug06G0380600
rosa_samantha Rh4DG040600 Rh6AG494600 Rh6BG504300 Rh6CG509500 Rh6DG495500
rosa_wichuraiana Rw6G043020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 230
AatII GACGTC 1 cut(s) 116
Acc16I TGCGCA 1 cut(s) 441
AccBSI CCGCTC 1 cut(s) 576
AccI GTMKAC 1 cut(s) 222
AccII CGCG 1 cut(s) 584
AciI CCGC 8 cut(s) 226, 323, 432, 519, 558, 576, 584, 611
AclWI GGATC 3 cut(s) 160, 669, 682
AcoI YGGCCR 2 cut(s) 608, 663
AcsI RAATTY 1 cut(s) 46
AcyI GRCGYC 1 cut(s) 113
AfaI GTAC 2 cut(s) 457, 779
AfiI CCNNNNNNNGG 4 cut(s) 175, 216, 428, 570
AgsI TTSAA 3 cut(s) 298, 369, 826
AjnI CCWGG 1 cut(s) 168
AleI CACNNNNGTG 1 cut(s) 842
AluBI AGCT 3 cut(s) 75, 401, 682
AluI AGCT 3 cut(s) 75, 401, 682
Alw26I GTCTC 5 cut(s) 48, 356, 527, 685, 805
AlwI GGATC 3 cut(s) 160, 669, 682
Ama87I CYCGRG 1 cut(s) 742
AoxI GGCC 3 cut(s) 385, 608, 663
ApeKI GCWGC 3 cut(s) 521, 587, 590
ApoI RAATTY 1 cut(s) 46
Asp700I GAANNNNTTC 1 cut(s) 415
AspLEI GCGC 3 cut(s) 150, 442, 541
AsuC2I CCSGG 4 cut(s) 197, 230, 743, 744
AsuHPI GGTGA 1 cut(s) 470
AvaI CYCGRG 1 cut(s) 742
BaeGI GKGCMC 1 cut(s) 839
BalI TGGCCA 1 cut(s) 665
BamHI GGATCC 1 cut(s) 674
BbvCI CCTCAGC 1 cut(s) 339
BbvI GCAGC 3 cut(s) 508, 599, 602
BccI CCATC 2 cut(s) 595, 826
BceAI ACGGC 1 cut(s) 552
BciT130I CCWGG 1 cut(s) 170
BcnI CCSGG 4 cut(s) 197, 230, 743, 744
BcoDI GTCTC 5 cut(s) 48, 356, 527, 685, 805
BfaI CTAG 1 cut(s) 51
BfoI RGCGCY 1 cut(s) 151
BglII AGATCT 1 cut(s) 798
BisI GCNGC 9 cut(s) 323, 433, 522, 559, 577, 585, 588, 591, 611
BlsI GCNGC 9 cut(s) 324, 434, 523, 560, 578, 586, 589, 592, 612
Bme1390I CCNGG 5 cut(s) 170, 197, 230, 743, 744
BmeT110I CYCGRG 1 cut(s) 742
BmiI GGNNCC 2 cut(s) 562, 676
BmrFI CCNGG 5 cut(s) 170, 197, 230, 743, 744
BpmI CTGGAG 1 cut(s) 169
Bpu10I CCTNAGC 1 cut(s) 339
BpuMI CCSGG 4 cut(s) 197, 230, 743, 744
BsaHI GRCGYC 1 cut(s) 113
BsaI GGTCTC 2 cut(s) 685, 805
BsaJI CCNNGG 2 cut(s) 210, 742
BsaWI WCCGGW 3 cut(s) 62, 153, 241
Bsc4I CCNNNNNNNGG 4 cut(s) 175, 216, 428, 570
Bse1I ACTGG 1 cut(s) 186
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 2 cut(s) 210, 742
BseGI GGATG 1 cut(s) 714
BseLI CCNNNNNNNGG 4 cut(s) 175, 216, 428, 570
BseMII CTCAG 3 cut(s) 353, 364, 701
BseNI ACTGG 1 cut(s) 186
BseRI GAGGAG 1 cut(s) 553
BseSI GKGCMC 1 cut(s) 839
BseXI GCAGC 3 cut(s) 508, 599, 602
BsgI GTGCAG 1 cut(s) 393
Bsh1236I CGCG 1 cut(s) 584
Bsh1285I CGRYCG 2 cut(s) 242, 314
BshFI GGCC 3 cut(s) 387, 610, 665
BsiEI CGRYCG 2 cut(s) 242, 314
BsiHKCI CYCGRG 1 cut(s) 742
BsiSI CCGG 6 cut(s) 63, 154, 197, 229, 242, 743
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 4 cut(s) 175, 216, 428, 570
BsmAI GTCTC 5 cut(s) 48, 356, 527, 685, 805
BsmBI CGTCTC 1 cut(s) 527
BsmFI GGGAC 1 cut(s) 179
BsnI GGCC 3 cut(s) 387, 610, 665
Bso31I GGTCTC 2 cut(s) 685, 805
BsoBI CYCGRG 1 cut(s) 742
Bsp1286I GDGCHC 1 cut(s) 839
Bsp143I GATC 6 cut(s) 89, 165, 674, 711, 760, 798
BspACI CCGC 8 cut(s) 226, 323, 432, 519, 558, 576, 584, 611
BspANI GGCC 3 cut(s) 387, 610, 665
BspCNI CTCAG 3 cut(s) 352, 363, 700
BspFNI CGCG 1 cut(s) 584
BspLI GGNNCC 2 cut(s) 562, 676
BspPI GGATC 3 cut(s) 160, 669, 682
BspTNI GGTCTC 2 cut(s) 685, 805
BsrBI CCGCTC 1 cut(s) 576
BsrI ACTGG 1 cut(s) 186
BssECI CCNNGG 2 cut(s) 210, 742
BssMI GATC 6 cut(s) 89, 165, 674, 711, 760, 798
BssNI GRCGYC 1 cut(s) 113
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 3 cut(s) 214, 315, 777
Bst6I CTCTTC 2 cut(s) 645, 803
BstACI GRCGYC 1 cut(s) 113
BstC8I GCNNGC 3 cut(s) 24, 146, 376
BstDEI CTNAG 3 cut(s) 339, 350, 687
BstDSI CCRYGG 1 cut(s) 210
BstEII GGTNACC 1 cut(s) 199
BstF5I GGATG 1 cut(s) 714
BstFNI CGCG 1 cut(s) 584
BstH2I RGCGCY 1 cut(s) 151
BstHHI GCGC 3 cut(s) 150, 442, 541
BstKTI GATC 6 cut(s) 92, 168, 677, 714, 763, 801
BstMAI GTCTC 5 cut(s) 48, 356, 527, 685, 805
BstMBI GATC 6 cut(s) 89, 165, 674, 711, 760, 798
BstMCI CGRYCG 2 cut(s) 242, 314
BstMWI GCNNNNNNNGC 4 cut(s) 156, 384, 555, 590
BstNI CCWGG 1 cut(s) 170
BstPI GGTNACC 1 cut(s) 199
BstSCI CCNGG 5 cut(s) 168, 195, 228, 741, 742
BstSLI GKGCMC 1 cut(s) 839
BstUI CGCG 1 cut(s) 584
BstV1I GCAGC 3 cut(s) 508, 599, 602
BstX2I RGATCY 3 cut(s) 165, 674, 798
BstYI RGATCY 3 cut(s) 165, 674, 798
BsuRI GGCC 3 cut(s) 387, 610, 665
BtgI CCRYGG 1 cut(s) 210
BtgZI GCGATG 1 cut(s) 845
BtsCI GGATG 1 cut(s) 714
BtsI GCAGTG 2 cut(s) 77, 137
BtsIMutI CAGTG 3 cut(s) 77, 137, 193
Cac8I GCNNGC 3 cut(s) 24, 146, 376
CfoI GCGC 3 cut(s) 150, 442, 541
Cfr9I CCCGGG 1 cut(s) 742
CseI GACGC 3 cut(s) 513, 590, 775
Csp6I GTAC 2 cut(s) 456, 778
CviAII CATG 4 cut(s) 160, 379, 661, 750
CviQI GTAC 2 cut(s) 456, 778
DdeI CTNAG 3 cut(s) 339, 350, 687
DpnI GATC 6 cut(s) 91, 167, 676, 713, 762, 800
DpnII GATC 6 cut(s) 89, 165, 674, 711, 760, 798
DrdI GACNNNNNNGTC 1 cut(s) 230
DseDI GACNNNNNNGTC 1 cut(s) 230
EaeI YGGCCR 2 cut(s) 608, 663
Eam1104I CTCTTC 2 cut(s) 645, 803
EarI CTCTTC 2 cut(s) 645, 803
Eco31I GGTCTC 2 cut(s) 685, 805
Eco88I CYCGRG 1 cut(s) 742
Eco91I GGTNACC 1 cut(s) 199
EcoO65I GGTNACC 1 cut(s) 199
EcoRI GAATTC 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 168
Esp3I CGTCTC 1 cut(s) 527
FaeI CATG 4 cut(s) 163, 382, 664, 753
FaiI YATR 8 cut(s) 15, 161, 380, 404, 492, 662, 751, 842
FaqI GGGAC 1 cut(s) 179
FatI CATG 4 cut(s) 159, 378, 660, 749
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 9 cut(s) 323, 433, 522, 559, 577, 585, 588, 591, 611
FokI GGATG 1 cut(s) 701
Fsp4HI GCNGC 9 cut(s) 323, 433, 522, 559, 577, 585, 588, 591, 611
FspBI CTAG 1 cut(s) 51
FspI TGCGCA 1 cut(s) 441
GlaI GCGC 3 cut(s) 149, 441, 540
GluI GCNGC 9 cut(s) 323, 433, 522, 559, 577, 585, 588, 591, 611
GsuI CTGGAG 1 cut(s) 169
HaeII RGCGCY 1 cut(s) 151
HaeIII GGCC 3 cut(s) 387, 610, 665
HapII CCGG 6 cut(s) 63, 154, 197, 229, 242, 743
HgaI GACGC 3 cut(s) 513, 590, 775
HhaI GCGC 3 cut(s) 150, 442, 541
Hin1I GRCGYC 1 cut(s) 113
Hin1II CATG 4 cut(s) 163, 382, 664, 753
Hin6I GCGC 3 cut(s) 148, 440, 539
HinP1I GCGC 3 cut(s) 148, 440, 539
HincII GTYRAC 1 cut(s) 308
HindII GTYRAC 1 cut(s) 308
HinfI GANTC 6 cut(s) 94, 139, 182, 251, 848, 854
HpaII CCGG 6 cut(s) 63, 154, 197, 229, 242, 743
HphI GGTGA 1 cut(s) 470
Hpy166II GTNNAC 2 cut(s) 223, 308
Hpy188I TCNGA 9 cut(s) 118, 353, 361, 532, 690, 765, 788, 853, 859
Hpy188III TCNNGA 3 cut(s) 51, 98, 622
Hpy8I GTNNAC 2 cut(s) 223, 308
Hpy99I CGWCG 3 cut(s) 112, 115, 584
HpyAV CCTTC 3 cut(s) 547, 640, 820
HpyCH4III ACNGT 3 cut(s) 214, 315, 777
HpyCH4IV ACGT 1 cut(s) 113
HpyCH4V TGCA 4 cut(s) 130, 159, 374, 749
HpyF10VI GCNNNNNNNGC 4 cut(s) 156, 384, 555, 590
HpyF3I CTNAG 3 cut(s) 339, 350, 687
HpySE526I ACGT 1 cut(s) 113
Hsp92I GRCGYC 1 cut(s) 113
Hsp92II CATG 4 cut(s) 163, 382, 664, 753
HspAI GCGC 3 cut(s) 148, 440, 539
Kzo9I GATC 6 cut(s) 89, 165, 674, 711, 760, 798
LmnI GCTCC 4 cut(s) 398, 566, 573, 687
Lsp1109I GCAGC 3 cut(s) 508, 599, 602
MaeI CTAG 1 cut(s) 51
MaeII ACGT 1 cut(s) 113
MaeIII GTNAC 1 cut(s) 199
MalI GATC 6 cut(s) 91, 167, 676, 713, 762, 800
MbiI CCGCTC 1 cut(s) 576
MboI GATC 6 cut(s) 89, 165, 674, 711, 760, 798
MboII GAAGA 5 cut(s) 175, 662, 805, 808, 820
MflI RGATCY 3 cut(s) 165, 674, 798
MhlI GDGCHC 1 cut(s) 839
MlsI TGGCCA 1 cut(s) 665
MluCI AATT 2 cut(s) 46, 411
MluNI TGGCCA 1 cut(s) 665
MlyI GAGTC 4 cut(s) 103, 176, 245, 848
MmeI TCCRAC 1 cut(s) 742
Mox20I TGGCCA 1 cut(s) 665
MroXI GAANNNNTTC 1 cut(s) 415
MscI TGGCCA 1 cut(s) 665
MseI TTAA 2 cut(s) 33, 669
MslI CAYNNNNRTG 3 cut(s) 492, 754, 842
Msp20I TGGCCA 1 cut(s) 665
MspA1I CMGCKG 1 cut(s) 521
MspI CCGG 6 cut(s) 63, 154, 197, 229, 242, 743
MspR9I CCNGG 5 cut(s) 170, 197, 230, 743, 744
MvaI CCWGG 1 cut(s) 170
MvnI CGCG 1 cut(s) 584
MwoI GCNNNNNNNGC 4 cut(s) 156, 384, 555, 590
NciI CCSGG 4 cut(s) 197, 230, 743, 744
NdeII GATC 6 cut(s) 89, 165, 674, 711, 760, 798
NlaIII CATG 4 cut(s) 163, 382, 664, 753
NlaIV GGNNCC 2 cut(s) 562, 676
NsbI TGCGCA 1 cut(s) 441
OliI CACNNNNGTG 1 cut(s) 842
PdmI GAANNNNTTC 1 cut(s) 415
PfeI GAWTC 2 cut(s) 139, 848
PflFI GACNNNGTC 1 cut(s) 112
PkrI GCNGC 9 cut(s) 324, 434, 523, 560, 578, 586, 589, 592, 612
PleI GAGTC 4 cut(s) 102, 176, 245, 848
PpsI GAGTC 4 cut(s) 102, 176, 245, 848
Psp6I CCWGG 1 cut(s) 168
PspEI GGTNACC 1 cut(s) 199
PspGI CCWGG 1 cut(s) 168
PspN4I GGNNCC 2 cut(s) 562, 676
PsuI RGATCY 3 cut(s) 165, 674, 798
PsyI GACNNNGTC 1 cut(s) 112
RsaI GTAC 2 cut(s) 457, 779
RsaNI GTAC 2 cut(s) 456, 778
RseI CAYNNNNRTG 3 cut(s) 492, 754, 842
SaqAI TTAA 2 cut(s) 33, 669
SatI GCNGC 9 cut(s) 323, 433, 522, 559, 577, 585, 588, 591, 611
Sau3AI GATC 6 cut(s) 89, 165, 674, 711, 760, 798
SchI GAGTC 4 cut(s) 103, 176, 245, 848
ScrFI CCNGG 5 cut(s) 170, 197, 230, 743, 744
SduI GDGCHC 1 cut(s) 839
SetI ASST 9 cut(s) 77, 116, 174, 303, 340, 403, 457, 684, 786
SmaI CCCGGG 1 cut(s) 744
SmiMI CAYNNNNRTG 3 cut(s) 492, 754, 842
Sse9I AATT 2 cut(s) 46, 411
SsiI CCGC 8 cut(s) 226, 323, 432, 519, 558, 576, 584, 611
SspI AATATT 1 cut(s) 31
SspMI CTAG 1 cut(s) 51
StyD4I CCNGG 5 cut(s) 168, 195, 228, 741, 742
TaaI ACNGT 3 cut(s) 214, 315, 777
TaiI ACGT 1 cut(s) 116
TaqI TCGA 2 cut(s) 92, 238
TaqII GACCGA 1 cut(s) 829
TasI AATT 2 cut(s) 46, 411
TauI GCSGC 6 cut(s) 325, 435, 561, 579, 587, 613
TfiI GAWTC 2 cut(s) 139, 848
Tru1I TTAA 2 cut(s) 33, 669
Tru9I TTAA 2 cut(s) 33, 669
TscAI CASTG 3 cut(s) 84, 137, 193
TseI GCWGC 3 cut(s) 521, 587, 590
TspDTI ATGAA 2 cut(s) 176, 649
TspGWI ACGGA 2 cut(s) 293, 411
TspMI CCCGGG 1 cut(s) 742
TspRI CASTG 3 cut(s) 84, 137, 193
Tth111I GACNNNGTC 1 cut(s) 112
XapI RAATTY 1 cut(s) 46
XbaI TCTAGA 1 cut(s) 50
XcmI CCANNNNNNNNNTGG 1 cut(s) 603
XmaI CCCGGG 1 cut(s) 742
XmiI GTMKAC 1 cut(s) 222
XmnI GAANNNNTTC 1 cut(s) 415
XspI CTAG 1 cut(s) 51
ZraI GACGTC 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.