Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016132

Physical Location & Seq

Genomic Coordinates Reverse (-)

40701350 .. 40703463

Gene Structure 2114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G488900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCAGCAACTTCCTCTTCTATGGCTTTGGCAAAGTTTTCCATGTTGGGTTATGTTGGAGGAGGGAGGAAAGAAGTGGGAAAGAGAAGGGGGTTTTCCATATCAGCAGCTCAGCAGCCAGAAGTCCAAGAACCACAAGAGGTGGAGGTGCAGGAAGGGAAAGGGTTGAAAAAGGAGAAAATAAAGCCAAAGGGAACCACACCAAGGCCAGTGGAAAAACAAGTGAATGTGCAGAGCAAGAACATGGGCAGAGAATATGGAGGGGATTGGCTTAGCAGTGTGACGAGGCATGTGAGGATCTATGCAGCTTACATTGACCCAGAAACCTGTGCTTTTGATCAGACACAGATGGATAAGCTCACCATTATCCTGGACCCCACCAAGGAGTTTGTGTGGACTTCTGAGACCTGCAATAAGGTCTACTCCTACTTCCAAGAGCTTGTAGATCACTATGAGGGTGCCCCATTGACAGAATATACTCTGCGTCTGATTGGTTCGGATATAGAGCACTACATAAGGAAGCTGCTATATGATGGAGAAATTAAATACAACATGGATGCAAGAGTCCTCAACTTCAGCATGGGCAAGCCTCGCATTATGTTCAATAACAATGATATCCAACCTCAGGATGTACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010257 GO:0010258 GO:0010598 GO:0016020 GO:0016043 GO:0022607 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NdhM

Protein Analysis

213

Amino Acids

24.15

Weight (kDa)

6.85

Isoelectric Point (pI)

39.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37925
fragaria_vesca	FvH4_2g27960
malus_domestica	MD15G1133300.v1.1
prunus_persica	Prupe.1G488900_v2.0.a1
pyrus_communis	pycom15g12020
rosa_chinensis	RchiOBHm_Chr6g0296781
rosa_laevigata	RLG00000011659
rosa_multiflora	Rmu_ssc0000192.1_g000012
rosa_roxburghii	Rroxscaffold_7G00171170
rosa_rugosa	Rorug06G0266100 Rorug06G0266200
rosa_samantha	Rh6AG377200 Rh6BG385400 Rh6DG377700
rosa_wichuraiana	Rw6G032960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	416
AccB1I	GGYRCC	1 cut(s)	458
AccI	GTMKAC	1 cut(s)	420
AclWI	GGATC	1 cut(s)	305
AcuI	CTGAAG	1 cut(s)	559
AfaI	GTAC	1 cut(s)	633
AfiI	CCNNNNNNNGG	3 cut(s)	204, 382, 625
AgsI	TTSAA	2 cut(s)	169, 604
AjnI	CCWGG	1 cut(s)	369
AluBI	AGCT	5 cut(s)	110, 308, 358, 439, 523
AluI	AGCT	5 cut(s)	110, 308, 358, 439, 523
Alw21I	GWGCWC	1 cut(s)	510
Alw26I	GTCTC	1 cut(s)	398
AlwI	GGATC	1 cut(s)	305
AoxI	GGCC	1 cut(s)	206
ApeKI	GCWGC	5 cut(s)	5, 107, 115, 305, 523
AspS9I	GGNCC	1 cut(s)	373
AsuHPI	GGTGA	1 cut(s)	352
AvaII	GGWCC	1 cut(s)	373
AxyI	CCTNAGG	1 cut(s)	624
BaeGI	GKGCMC	1 cut(s)	463
BanI	GGYRCC	1 cut(s)	458
Bbv12I	GWGCWC	1 cut(s)	510
BbvI	GCAGC	5 cut(s)	17, 119, 127, 317, 510
BccI	CCATC	2 cut(s)	343, 527
BciT130I	CCWGG	1 cut(s)	371
BclI	TGATCA	1 cut(s)	337
BcoDI	GTCTC	1 cut(s)	398
BfuAI	ACCTGC	1 cut(s)	416
BisI	GCNGC	5 cut(s)	6, 108, 116, 306, 524
BlpI	GCTNAGC	2 cut(s)	111, 272
BlsI	GCNGC	5 cut(s)	7, 109, 117, 307, 525
Bme1390I	CCNGG	1 cut(s)	371
Bme18I	GGWCC	1 cut(s)	373
BmgT120I	GGNCC	1 cut(s)	373
BmiI	GGNNCC	3 cut(s)	196, 375, 460
BmrFI	CCNGG	1 cut(s)	371
BmsI	GCATC	1 cut(s)	547
Bpu1102I	GCTNAGC	2 cut(s)	111, 272
BsaI	GGTCTC	1 cut(s)	398
BsaJI	CCNNGG	2 cut(s)	203, 381
BsaXI	ACNNNNNCTCC	2 cut(s)	377, 407
Bsc4I	CCNNNNNNNGG	3 cut(s)	204, 382, 625
Bse1I	ACTGG	1 cut(s)	209
Bse21I	CCTNAGG	1 cut(s)	624
BseBI	CCWGG	1 cut(s)	371
BseDI	CCNNGG	2 cut(s)	203, 381
BseGI	GGATG	2 cut(s)	562, 634
BseLI	CCNNNNNNNGG	3 cut(s)	204, 382, 625
BseMII	CTCAG	3 cut(s)	125, 393, 638
BseNI	ACTGG	1 cut(s)	209
BseRI	GAGGAG	1 cut(s)	75
BseSI	GKGCMC	1 cut(s)	463
BseXI	GCAGC	5 cut(s)	17, 119, 127, 317, 510
BsgI	GTGCAG	2 cut(s)	170, 251
BshFI	GGCC	1 cut(s)	208
BshNI	GGYRCC	1 cut(s)	458
BsiHKAI	GWGCWC	1 cut(s)	510
BslI	CCNNNNNNNGG	3 cut(s)	204, 382, 625
BsmAI	GTCTC	1 cut(s)	398
BsnI	GGCC	1 cut(s)	208
Bso31I	GGTCTC	1 cut(s)	398
Bsp1286I	GDGCHC	2 cut(s)	463, 510
Bsp1407I	TGTACA	1 cut(s)	631
Bsp143I	GATC	3 cut(s)	297, 337, 445
Bsp1720I	GCTNAGC	2 cut(s)	111, 272
BspANI	GGCC	1 cut(s)	208
BspCNI	CTCAG	3 cut(s)	124, 394, 637
BspLI	GGNNCC	3 cut(s)	196, 375, 460
BspMI	ACCTGC	1 cut(s)	416
BspPI	GGATC	1 cut(s)	305
BspT107I	GGYRCC	1 cut(s)	458
BspTNI	GGTCTC	1 cut(s)	398
BsrGI	TGTACA	1 cut(s)	631
BsrI	ACTGG	1 cut(s)	209
BssECI	CCNNGG	2 cut(s)	203, 381
BssMI	GATC	3 cut(s)	297, 337, 445
BssT1I	CCWWGG	2 cut(s)	203, 381
Bst2UI	CCWGG	1 cut(s)	371
Bst6I	CTCTTC	1 cut(s)	22
BstAUI	TGTACA	1 cut(s)	631
BstC8I	GCNNGC	1 cut(s)	587
BstDEI	CTNAG	4 cut(s)	111, 272, 402, 624
BstF5I	GGATG	2 cut(s)	562, 634
BstKTI	GATC	3 cut(s)	300, 340, 448
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	3 cut(s)	297, 337, 445
BstMWI	GCNNNNNNNGC	1 cut(s)	591
BstNI	CCWGG	1 cut(s)	371
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	369
BstSLI	GKGCMC	1 cut(s)	463
BstV1I	GCAGC	5 cut(s)	17, 119, 127, 317, 510
BstX2I	RGATCY	1 cut(s)	297
BstXI	CCANNNNNNTGG	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	297
Bsu36I	CCTNAGG	1 cut(s)	624
BsuRI	GGCC	1 cut(s)	208
BtsCI	GGATG	2 cut(s)	562, 634
BtsI	GCAGTG	1 cut(s)	283
BtsIMutI	CAGTG	2 cut(s)	216, 283
BveI	ACCTGC	1 cut(s)	416
Cac8I	GCNNGC	1 cut(s)	587
Cfr13I	GGNCC	1 cut(s)	373
CseI	GACGC	1 cut(s)	473
Csp6I	GTAC	1 cut(s)	632
CspCI	CAANNNNNGTGG	2 cut(s)	192, 227
CviAII	CATG	5 cut(s)	43, 244, 290, 553, 580
CviQI	GTAC	1 cut(s)	632
DdeI	CTNAG	4 cut(s)	111, 272, 402, 624
DpnI	GATC	3 cut(s)	299, 339, 447
DpnII	GATC	3 cut(s)	297, 337, 445
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
Eco130I	CCWWGG	2 cut(s)	203, 381
Eco31I	GGTCTC	1 cut(s)	398
Eco32I	GATATC	1 cut(s)	616
Eco47I	GGWCC	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	559
Eco81I	CCTNAGG	1 cut(s)	624
EcoRII	CCWGG	1 cut(s)	369
EcoRV	GATATC	1 cut(s)	616
EcoT14I	CCWWGG	2 cut(s)	203, 381
ErhI	CCWWGG	2 cut(s)	203, 381
FaeI	CATG	5 cut(s)	46, 247, 293, 556, 583
FatI	CATG	5 cut(s)	42, 243, 289, 552, 579
FbaI	TGATCA	1 cut(s)	337
FblI	GTMKAC	1 cut(s)	420
Fnu4HI	GCNGC	5 cut(s)	6, 108, 116, 306, 524
FokI	GGATG	1 cut(s)	569
Fsp4HI	GCNGC	5 cut(s)	6, 108, 116, 306, 524
GluI	GCNGC	5 cut(s)	6, 108, 116, 306, 524
HaeIII	GGCC	1 cut(s)	208
HgaI	GACGC	1 cut(s)	473
Hin1II	CATG	5 cut(s)	46, 247, 293, 556, 583
HinfI	GANTC	1 cut(s)	564
HphI	GGTGA	1 cut(s)	352
Hpy166II	GTNNAC	2 cut(s)	396, 421
Hpy188I	TCNGA	4 cut(s)	342, 403, 489, 499
Hpy188III	TCNNGA	1 cut(s)	626
Hpy8I	GTNNAC	2 cut(s)	396, 421
HpyAV	CCTTC	2 cut(s)	81, 149
HpyCH4V	TGCA	5 cut(s)	151, 232, 305, 411, 560
HpyF10VI	GCNNNNNNNGC	1 cut(s)	591
HpyF3I	CTNAG	4 cut(s)	111, 272, 402, 624
Hsp92II	CATG	5 cut(s)	46, 247, 293, 556, 583
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	3 cut(s)	297, 337, 445
LpnPI	CCDG	9 cut(s)	132, 137, 222, 333, 340, 356, 383, 421, 611
Lsp1109I	GCAGC	5 cut(s)	17, 119, 127, 317, 510
LweI	GCATC	1 cut(s)	547
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	3 cut(s)	299, 339, 447
MboI	GATC	3 cut(s)	297, 337, 445
MboII	GAAGA	1 cut(s)	9
MflI	RGATCY	1 cut(s)	297
MhlI	GDGCHC	2 cut(s)	463, 510
MluCI	AATT	1 cut(s)	540
MlyI	GAGTC	1 cut(s)	573
MmeI	TCCRAC	1 cut(s)	37
MseI	TTAA	1 cut(s)	543
MspR9I	CCNGG	1 cut(s)	371
MvaI	CCWGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	1 cut(s)	591
NdeII	GATC	3 cut(s)	297, 337, 445
NlaIII	CATG	5 cut(s)	46, 247, 293, 556, 583
NlaIV	GGNNCC	3 cut(s)	196, 375, 460
NmuCI	GTSAC	1 cut(s)	280
NspI	RCATGY	1 cut(s)	293
PfoI	TCCNGGA	1 cut(s)	369
PkrI	GCNGC	5 cut(s)	7, 109, 117, 307, 525
PleI	GAGTC	1 cut(s)	572
PpsI	GAGTC	1 cut(s)	572
Psp6I	CCWGG	1 cut(s)	369
PspGI	CCWGG	1 cut(s)	369
PspN4I	GGNNCC	3 cut(s)	196, 375, 460
PspPI	GGNCC	1 cut(s)	373
PsuI	RGATCY	1 cut(s)	297
RsaI	GTAC	1 cut(s)	633
RsaNI	GTAC	1 cut(s)	632
SaqAI	TTAA	1 cut(s)	543
SatI	GCNGC	5 cut(s)	6, 108, 116, 306, 524
Sau3AI	GATC	3 cut(s)	297, 337, 445
Sau96I	GGNCC	1 cut(s)	373
SchI	GAGTC	1 cut(s)	573
ScrFI	CCNGG	1 cut(s)	371
SduI	GDGCHC	2 cut(s)	463, 510
SfaNI	GCATC	1 cut(s)	547
SinI	GGWCC	1 cut(s)	373
Sse9I	AATT	1 cut(s)	540
StyD4I	CCNGG	1 cut(s)	369
StyI	CCWWGG	2 cut(s)	203, 381
TasI	AATT	1 cut(s)	540
TatI	WGTACW	1 cut(s)	631
Tru1I	TTAA	1 cut(s)	543
Tru9I	TTAA	1 cut(s)	543
TscAI	CASTG	2 cut(s)	216, 283
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	5 cut(s)	5, 107, 115, 305, 523
Tsp45I	GTSAC	1 cut(s)	280
TspRI	CASTG	2 cut(s)	216, 283
VpaK11BI	GGWCC	1 cut(s)	373
XceI	RCATGY	1 cut(s)	293
XmiI	GTMKAC	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.