Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0016132

Physical Location & Seq

Genomic Coordinates Reverse (-)

11504174 .. 11505587

Gene Structure 1414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00171170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGCTACTGCATTCAGCCATGGCAGCGACTTCTTCTTATATGGCTTGTGCAAAATTCTCTATGTTGGGTTATGCTGGAAGAAGAATCCAACTGAGAAGCAGAAGAGACTTCTTTATAAGAGCTCAGCAGCAACCTGGTGAAGTCCAAGAGCCACAAGAACTGAAAATACAAGAACCAGAAGTACAGAGAGAAAAAGGAGAGCCAAAAGGAACAGTGCCAAGGCCAGTGGAGACACAATTGAATGTGAAGAGTAGGAACATGGCGAGAGAATATGGTGGGGATTGGCTTAGCTGTGCCACAAGGCATGTGAGGATTTATGCAGCTTATATAGACCCGGAAACCTGTGCATTTGATCAGACACAGATGGACAAGCTCACCATTATACTTGATCCAACCAATGAGTTTGTATGGACTCCAGAGACTACCAACAAGGTCTACTCCTACTTCCAAGAGCTTGTGGATCACTATGAGGGTGCAGATTTGACAGAATACACTCTGCGTCTGATTGGTTCAGACATAGAGCACTACATAAGGAAGCTTCTCTATGACGGAGAAATCAAATACAACATGGATGCAAGAGTCCTTAACTTCAGCATGGGTAAGCCTCGCGTTATGTTCAATAACAACGAATTTCAACCTCAGGATGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010257 GO:0010258 GO:0010598 GO:0016020 GO:0016043 GO:0022607 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NdhM

Protein Analysis

216

Amino Acids

25.14

Weight (kDa)

5.66

Isoelectric Point (pI)

48.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NdhM	PF10664	96 - 204	2.1e-46	Cyanobacterial and plastid NDH-1 subunit M

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37925
fragaria_vesca	FvH4_2g27960
malus_domestica	MD15G1133300.v1.1
prunus_persica	Prupe.1G488900_v2.0.a1
pyrus_communis	pycom15g12020
rosa_chinensis	RchiOBHm_Chr6g0296781
rosa_laevigata	RLG00000011659
rosa_multiflora	Rmu_ssc0000192.1_g000012
rosa_roxburghii	Rroxscaffold_7G00171170
rosa_rugosa	Rorug06G0266100 Rorug06G0266200
rosa_samantha	Rh6AG377200 Rh6BG385400 Rh6DG377700
rosa_wichuraiana	Rw6G032960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	116
AccI	GTMKAC	1 cut(s)	435
AccII	CGCG	1 cut(s)	609
AclWI	GGATC	2 cut(s)	383, 468
AcsI	RAATTY	2 cut(s)	53, 629
AcuI	CTGAAG	1 cut(s)	574
AfaI	GTAC	1 cut(s)	183
AgsI	TTSAA	3 cut(s)	241, 619, 635
AjnI	CCWGG	1 cut(s)	133
AluBI	AGCT	6 cut(s)	122, 291, 323, 373, 454, 538
AluI	AGCT	6 cut(s)	122, 291, 323, 373, 454, 538
Alw21I	GWGCWC	2 cut(s)	124, 525
Alw26I	GTCTC	3 cut(s)	99, 224, 413
AlwI	GGATC	2 cut(s)	383, 468
AoxI	GGCC	1 cut(s)	221
ApeKI	GCWGC	3 cut(s)	23, 127, 320
ApoI	RAATTY	2 cut(s)	53, 629
AsuC2I	CCSGG	1 cut(s)	335
AsuHPI	GGTGA	2 cut(s)	149, 367
AxyI	CCTNAGG	1 cut(s)	639
BanII	GRGCYC	1 cut(s)	124
Bbv12I	GWGCWC	2 cut(s)	124, 525
BbvI	GCAGC	3 cut(s)	35, 139, 332
BccI	CCATC	1 cut(s)	358
BciT130I	CCWGG	1 cut(s)	135
BclI	TGATCA	1 cut(s)	352
BcnI	CCSGG	1 cut(s)	335
BcoDI	GTCTC	3 cut(s)	99, 224, 413
BisI	GCNGC	3 cut(s)	24, 128, 321
BlpI	GCTNAGC	2 cut(s)	123, 287
BlsI	GCNGC	3 cut(s)	25, 129, 322
Bme1390I	CCNGG	2 cut(s)	135, 335
BmrFI	CCNGG	2 cut(s)	135, 335
BmsI	GCATC	1 cut(s)	562
BpmI	CTGGAG	1 cut(s)	399
Bpu1102I	GCTNAGC	2 cut(s)	123, 287
BpuMI	CCSGG	1 cut(s)	335
BsaJI	CCNNGG	2 cut(s)	18, 218
Bse1I	ACTGG	1 cut(s)	224
Bse21I	CCTNAGG	1 cut(s)	639
BseBI	CCWGG	1 cut(s)	135
BseDI	CCNNGG	2 cut(s)	18, 218
BseGI	GGATG	2 cut(s)	577, 649
BseMII	CTCAG	2 cut(s)	83, 137
BseNI	ACTGG	1 cut(s)	224
BseXI	GCAGC	3 cut(s)	35, 139, 332
BsgI	GTGCAG	1 cut(s)	495
Bsh1236I	CGCG	1 cut(s)	609
BshFI	GGCC	1 cut(s)	223
BsiHKAI	GWGCWC	2 cut(s)	124, 525
BsiSI	CCGG	1 cut(s)	335
BsmAI	GTCTC	3 cut(s)	99, 224, 413
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	223
Bsp1286I	GDGCHC	2 cut(s)	124, 525
Bsp143I	GATC	3 cut(s)	352, 388, 460
Bsp1720I	GCTNAGC	2 cut(s)	123, 287
Bsp19I	CCATGG	1 cut(s)	18
BspANI	GGCC	1 cut(s)	223
BspCNI	CTCAG	2 cut(s)	84, 136
BspFNI	CGCG	1 cut(s)	609
BspPI	GGATC	2 cut(s)	383, 468
BsrI	ACTGG	1 cut(s)	224
BssECI	CCNNGG	2 cut(s)	18, 218
BssMI	GATC	3 cut(s)	352, 388, 460
BssT1I	CCWWGG	2 cut(s)	18, 218
Bst2UI	CCWGG	1 cut(s)	135
Bst4CI	ACNGT	1 cut(s)	214
Bst6I	CTCTTC	2 cut(s)	97, 242
BstDEI	CTNAG	4 cut(s)	92, 123, 287, 639
BstDSI	CCRYGG	1 cut(s)	18
BstF5I	GGATG	2 cut(s)	577, 649
BstFNI	CGCG	1 cut(s)	609
BstKTI	GATC	3 cut(s)	355, 391, 463
BstMAI	GTCTC	3 cut(s)	99, 224, 413
BstMBI	GATC	3 cut(s)	352, 388, 460
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNI	CCWGG	1 cut(s)	135
BstNSI	RCATGY	1 cut(s)	308
BstSCI	CCNGG	2 cut(s)	133, 333
BstUI	CGCG	1 cut(s)	609
BstV1I	GCAGC	3 cut(s)	35, 139, 332
Bsu36I	CCTNAGG	1 cut(s)	639
BsuRI	GGCC	1 cut(s)	223
BtgI	CCRYGG	1 cut(s)	18
BtsCI	GGATG	2 cut(s)	577, 649
BtsIMutI	CAGTG	2 cut(s)	219, 231
CseI	GACGC	1 cut(s)	488
CsiI	ACCWGGT	1 cut(s)	133
Csp6I	GTAC	1 cut(s)	182
CspCI	CAANNNNNGTGG	2 cut(s)	207, 242
CviAII	CATG	5 cut(s)	19, 259, 305, 568, 595
CviQI	GTAC	1 cut(s)	182
DdeI	CTNAG	4 cut(s)	92, 123, 287, 639
DpnI	GATC	3 cut(s)	354, 390, 462
DpnII	GATC	3 cut(s)	352, 388, 460
Eam1104I	CTCTTC	2 cut(s)	97, 242
EarI	CTCTTC	2 cut(s)	97, 242
Ecl136II	GAGCTC	1 cut(s)	122
Eco130I	CCWWGG	2 cut(s)	18, 218
Eco24I	GRGCYC	1 cut(s)	124
Eco53kI	GAGCTC	1 cut(s)	122
Eco57I	CTGAAG	1 cut(s)	574
Eco81I	CCTNAGG	1 cut(s)	639
EcoICRI	GAGCTC	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	133
EcoT14I	CCWWGG	2 cut(s)	18, 218
EcoT38I	GRGCYC	1 cut(s)	124
ErhI	CCWWGG	2 cut(s)	18, 218
FaeI	CATG	5 cut(s)	22, 262, 308, 571, 598
FatI	CATG	5 cut(s)	18, 258, 304, 567, 594
FbaI	TGATCA	1 cut(s)	352
FblI	GTMKAC	1 cut(s)	435
Fnu4HI	GCNGC	3 cut(s)	24, 128, 321
FokI	GGATG	1 cut(s)	584
FriOI	GRGCYC	1 cut(s)	124
Fsp4HI	GCNGC	3 cut(s)	24, 128, 321
GluI	GCNGC	3 cut(s)	24, 128, 321
GsuI	CTGGAG	1 cut(s)	399
HaeIII	GGCC	1 cut(s)	223
HapII	CCGG	1 cut(s)	335
HgaI	GACGC	1 cut(s)	488
Hin1II	CATG	5 cut(s)	22, 262, 308, 571, 598
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	3 cut(s)	84, 412, 579
HpaII	CCGG	1 cut(s)	335
HphI	GGTGA	2 cut(s)	149, 367
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188I	TCNGA	3 cut(s)	357, 504, 514
Hpy188III	TCNNGA	2 cut(s)	416, 641
Hpy8I	GTNNAC	1 cut(s)	436
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4V	TGCA	6 cut(s)	10, 50, 320, 347, 476, 575
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	4 cut(s)	92, 123, 287, 639
Hsp92II	CATG	5 cut(s)	22, 262, 308, 571, 598
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	3 cut(s)	352, 388, 460
LpnPI	CCDG	9 cut(s)	60, 120, 147, 189, 237, 348, 355, 429, 626
Lsp1109I	GCAGC	3 cut(s)	35, 139, 332
LweI	GCATC	1 cut(s)	562
MabI	ACCWGGT	1 cut(s)	133
MalI	GATC	3 cut(s)	354, 390, 462
MboI	GATC	3 cut(s)	352, 388, 460
MboII	GAAGA	5 cut(s)	24, 90, 93, 114, 259
MfeI	CAATTG	1 cut(s)	236
MhlI	GDGCHC	2 cut(s)	124, 525
MluCI	AATT	3 cut(s)	53, 236, 629
MlyI	GAGTC	2 cut(s)	406, 588
MmeI	TCCRAC	2 cut(s)	112, 416
MnlI	CCTC	4 cut(s)	303, 463, 615, 648
MseI	TTAA	1 cut(s)	585
MspI	CCGG	1 cut(s)	335
MspR9I	CCNGG	2 cut(s)	135, 335
MunI	CAATTG	1 cut(s)	236
Mva1269I	GAATGC	1 cut(s)	10
MvaI	CCWGG	1 cut(s)	135
MvnI	CGCG	1 cut(s)	609
MwoI	GCNNNNNNNGC	1 cut(s)	23
NciI	CCSGG	1 cut(s)	335
NcoI	CCATGG	1 cut(s)	18
NdeII	GATC	3 cut(s)	352, 388, 460
NlaIII	CATG	5 cut(s)	22, 262, 308, 571, 598
NspI	RCATGY	1 cut(s)	308
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	84
PkrI	GCNGC	3 cut(s)	25, 129, 322
PleI	GAGTC	2 cut(s)	406, 587
PpsI	GAGTC	2 cut(s)	406, 587
PsiI	TTATAA	1 cut(s)	116
Psp124BI	GAGCTC	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	133
PsrI	GAACNNNNNNTAC	4 cut(s)	150, 165, 182, 197
RsaI	GTAC	1 cut(s)	183
RsaNI	GTAC	1 cut(s)	182
SacI	GAGCTC	1 cut(s)	124
SaqAI	TTAA	1 cut(s)	585
SatI	GCNGC	3 cut(s)	24, 128, 321
Sau3AI	GATC	3 cut(s)	352, 388, 460
SchI	GAGTC	2 cut(s)	406, 588
ScrFI	CCNGG	2 cut(s)	135, 335
SduI	GDGCHC	2 cut(s)	124, 525
SexAI	ACCWGGT	1 cut(s)	133
SfaNI	GCATC	1 cut(s)	562
Sse9I	AATT	3 cut(s)	53, 236, 629
SstI	GAGCTC	1 cut(s)	124
StyD4I	CCNGG	2 cut(s)	133, 333
StyI	CCWWGG	2 cut(s)	18, 218
TaaI	ACNGT	1 cut(s)	214
TasI	AATT	3 cut(s)	53, 236, 629
TatI	WGTACW	1 cut(s)	181
TfiI	GAWTC	1 cut(s)	84
Tru1I	TTAA	1 cut(s)	585
Tru9I	TTAA	1 cut(s)	585
TscAI	CASTG	2 cut(s)	219, 231
TseI	GCWGC	3 cut(s)	23, 127, 320
TspGWI	ACGGA	1 cut(s)	564
TspRI	CASTG	2 cut(s)	219, 231
XapI	RAATTY	2 cut(s)	53, 629
XceI	RCATGY	1 cut(s)	308
XmiI	GTMKAC	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.