Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0016132

Physical Location & Seq

Genomic Coordinates Reverse (-)

41289711 .. 41290695

Gene Structure 985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0266200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAAGATTATGAGGCAGTTTAGTATTCTTATCCTACTGGTTCTAGGCATTTGCAGCATAGAAGCTGCAGATCCTATGGCAGATTTCTGCAACAAAGACACTAATATAAGTAAAAGTAGTCAAATCTCAGCAAATATTGATGCTTTACTGGCCGAATTGGTTTCTGAAACTCCCTCAACTGGCTATTTTGCTACCTCCCATGGCAAAGGCCAAGCTCAAGTCTATGGCTTGGCTCAATGCAGAGGTGATGTTGTGGGAAGCAAAGACTGCTCAAGTTGTATTCAAGACTCTGCAAAAGAAATCCGCCAGCGTTGTCCAGACCAAGCAGCTGCAACGATTTGGTATGACTTTTGCTTCTTGAGGTACAGCAACAAGAGTTTCATTGGAGAAGTTGATACGTCTTATGGTATAATCTTCTATAATGTTCAGAATGTGACTGACCCTGAGAAGTTTGTCAAAGAACTAGGAGCTCTGGTGGATAATATTAAAGCACAAGCTGTGGTGCCAAAGAATCTAGGATTTGGGAAAGGCGAGACCAAGCTGTCACCATTGACGACACTCTATGCCTTTGGGCAATGCACAAGGGACTTGGCTAAGCTAGATTGTTCTCAGTGCTTGGCCATTGCAGTGGGAAACTACGAAACCATTTGTGGCAATCGAAGGGGATGTCGAGTTCTTTATGGTAGTTGCTATGTCAGATATGAGCTCTATCCAATTTTCTACCCTGTTGGTTCCAACAGTAGTATGAATGTTGTGGCTGATGAAACTAAAATGATTCTAGTCAATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010257 GO:0010258 GO:0010598 GO:0016020 GO:0016043 GO:0022607 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NdhM

Protein Analysis

263

Amino Acids

28.82

Weight (kDa)

5.92

Isoelectric Point (pI)

31.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	30 - 125	5.4e-24	Salt stress response/antifungal
Stress-antifung	PF01657	143 - 236	1.6e-12	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37925
fragaria_vesca	FvH4_2g27960
malus_domestica	MD15G1133300.v1.1
prunus_persica	Prupe.1G488900_v2.0.a1
pyrus_communis	pycom15g12020
rosa_chinensis	RchiOBHm_Chr6g0296781
rosa_laevigata	RLG00000011659
rosa_multiflora	Rmu_ssc0000192.1_g000012
rosa_roxburghii	Rroxscaffold_7G00171170
rosa_rugosa	Rorug06G0266100 Rorug06G0266200
rosa_samantha	Rh6AG377200 Rh6BG385400 Rh6DG377700
rosa_wichuraiana	Rw6G032960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	541
AccB1I	GGYRCC	1 cut(s)	502
AciI	CCGC	1 cut(s)	304
AclWI	GGATC	1 cut(s)	65
AcoI	YGGCCR	2 cut(s)	150, 618
AfaI	GTAC	1 cut(s)	365
AfiI	CCNNNNNNNGG	1 cut(s)	179
AgsI	TTSAA	1 cut(s)	284
AloI	GAACNNNNNNTCC	2 cut(s)	657, 689
AluBI	AGCT	8 cut(s)	65, 215, 329, 470, 497, 541, 598, 706
AluI	AGCT	8 cut(s)	65, 215, 329, 470, 497, 541, 598, 706
Alw21I	GWGCWC	2 cut(s)	472, 708
Alw26I	GTCTC	1 cut(s)	527
AlwI	GGATC	1 cut(s)	65
AoxI	GGCC	3 cut(s)	150, 208, 618
ApeKI	GCWGC	4 cut(s)	54, 65, 326, 329
ArsI	GACNNNNNNTTYG	2 cut(s)	652, 684
AsuHPI	GGTGA	2 cut(s)	257, 537
BalI	TGGCCA	1 cut(s)	620
BanI	GGYRCC	1 cut(s)	502
BanII	GRGCYC	2 cut(s)	472, 708
Bbv12I	GWGCWC	2 cut(s)	472, 708
BbvI	GCAGC	4 cut(s)	52, 66, 316, 338
BcoDI	GTCTC	1 cut(s)	527
BfaI	CTAG	5 cut(s)	44, 464, 515, 599, 779
BfmI	CTRYAG	1 cut(s)	66
BisI	GCNGC	4 cut(s)	55, 66, 327, 330
BlpI	GCTNAGC	1 cut(s)	594
BlsI	GCNGC	4 cut(s)	56, 67, 328, 331
BmiI	GGNNCC	2 cut(s)	504, 733
BmsI	GCATC	1 cut(s)	130
Bpu1102I	GCTNAGC	1 cut(s)	594
BpuEI	CTTGAG	3 cut(s)	201, 256, 379
BsaI	GGTCTC	1 cut(s)	527
BsaJI	CCNNGG	1 cut(s)	199
BsaXI	ACNNNNNCTCC	2 cut(s)	459, 489
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse1I	ACTGG	3 cut(s)	42, 153, 184
Bse3DI	GCAATG	2 cut(s)	581, 621
BseDI	CCNNGG	1 cut(s)	199
BseGI	GGATG	1 cut(s)	671
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseMI	GCAATG	2 cut(s)	581, 621
BseMII	CTCAG	3 cut(s)	141, 435, 623
BseNI	ACTGG	3 cut(s)	42, 153, 184
BseXI	GCAGC	4 cut(s)	52, 66, 316, 338
BshFI	GGCC	3 cut(s)	152, 210, 620
BshNI	GGYRCC	1 cut(s)	502
BsiHKAI	GWGCWC	2 cut(s)	472, 708
BslFI	GGGAC	1 cut(s)	599
BslI	CCNNNNNNNGG	1 cut(s)	179
BsmAI	GTCTC	1 cut(s)	527
BsmFI	GGGAC	1 cut(s)	599
BsnI	GGCC	3 cut(s)	152, 210, 620
Bso31I	GGTCTC	1 cut(s)	527
Bsp1286I	GDGCHC	2 cut(s)	472, 708
Bsp143I	GATC	1 cut(s)	70
Bsp1720I	GCTNAGC	1 cut(s)	594
Bsp19I	CCATGG	1 cut(s)	199
BspACI	CCGC	1 cut(s)	304
BspANI	GGCC	3 cut(s)	152, 210, 620
BspCNI	CTCAG	3 cut(s)	140, 436, 622
BspLI	GGNNCC	2 cut(s)	504, 733
BspMAI	CTGCAG	1 cut(s)	70
BspPI	GGATC	1 cut(s)	65
BspT107I	GGYRCC	1 cut(s)	502
BspTNI	GGTCTC	1 cut(s)	527
BsrDI	GCAATG	2 cut(s)	581, 621
BsrI	ACTGG	3 cut(s)	42, 153, 184
BssECI	CCNNGG	1 cut(s)	199
BssMI	GATC	1 cut(s)	70
BssT1I	CCWWGG	1 cut(s)	199
Bst4CI	ACNGT	1 cut(s)	740
BstAPI	GCANNNNNTGC	1 cut(s)	267
BstC8I	GCNNGC	1 cut(s)	308
BstDEI	CTNAG	4 cut(s)	127, 444, 594, 609
BstDSI	CCRYGG	1 cut(s)	199
BstF5I	GGATG	1 cut(s)	671
BstKTI	GATC	1 cut(s)	73
BstMAI	GTCTC	1 cut(s)	527
BstMBI	GATC	1 cut(s)	70
BstMWI	GCNNNNNNNGC	3 cut(s)	54, 149, 267
BstSFI	CTRYAG	1 cut(s)	66
BstV1I	GCAGC	4 cut(s)	52, 66, 316, 338
BstX2I	RGATCY	1 cut(s)	70
BstXI	CCANNNNNNTGG	1 cut(s)	628
BstYI	RGATCY	1 cut(s)	70
BsuRI	GGCC	3 cut(s)	152, 210, 620
BtgI	CCRYGG	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	671
BtsI	GCAGTG	1 cut(s)	633
BtsIMutI	CAGTG	2 cut(s)	617, 633
Cac8I	GCNNGC	1 cut(s)	308
Csp6I	GTAC	1 cut(s)	364
CviAII	CATG	1 cut(s)	200
CviQI	GTAC	1 cut(s)	364
DdeI	CTNAG	4 cut(s)	127, 444, 594, 609
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
DrdI	GACNNNNNNGTC	1 cut(s)	541
DseDI	GACNNNNNNGTC	1 cut(s)	541
EaeI	YGGCCR	2 cut(s)	150, 618
EciI	GGCGGA	1 cut(s)	293
Ecl136II	GAGCTC	2 cut(s)	470, 706
Eco130I	CCWWGG	1 cut(s)	199
Eco24I	GRGCYC	2 cut(s)	472, 708
Eco31I	GGTCTC	1 cut(s)	527
Eco53kI	GAGCTC	2 cut(s)	470, 706
EcoICRI	GAGCTC	2 cut(s)	470, 706
EcoT14I	CCWWGG	1 cut(s)	199
EcoT38I	GRGCYC	2 cut(s)	472, 708
ErhI	CCWWGG	1 cut(s)	199
FaeI	CATG	1 cut(s)	203
FaqI	GGGAC	1 cut(s)	599
FatI	CATG	1 cut(s)	199
Fnu4HI	GCNGC	4 cut(s)	55, 66, 327, 330
FokI	GGATG	1 cut(s)	678
FriOI	GRGCYC	2 cut(s)	472, 708
Fsp4HI	GCNGC	4 cut(s)	55, 66, 327, 330
FspBI	CTAG	5 cut(s)	44, 464, 515, 599, 779
GluI	GCNGC	4 cut(s)	55, 66, 327, 330
HaeIII	GGCC	3 cut(s)	152, 210, 620
Hin1II	CATG	1 cut(s)	203
HinfI	GANTC	3 cut(s)	287, 511, 775
HphI	GGTGA	2 cut(s)	257, 537
Hpy188I	TCNGA	3 cut(s)	166, 429, 698
Hpy188III	TCNNGA	3 cut(s)	284, 317, 358
HpyAV	CCTTC	1 cut(s)	654
HpyCH4III	ACNGT	1 cut(s)	740
HpyCH4IV	ACGT	1 cut(s)	398
HpyCH4V	TGCA	8 cut(s)	54, 68, 90, 240, 293, 332, 579, 626
HpyF10VI	GCNNNNNNNGC	3 cut(s)	54, 149, 267
HpyF3I	CTNAG	4 cut(s)	127, 444, 594, 609
HpySE526I	ACGT	1 cut(s)	398
Hsp92II	CATG	1 cut(s)	203
Kzo9I	GATC	1 cut(s)	70
LmnI	GCTCC	1 cut(s)	467
LpnPI	CCDG	8 cut(s)	23, 134, 165, 320, 330, 456, 458, 738
Lsp1109I	GCAGC	4 cut(s)	52, 66, 316, 338
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	5 cut(s)	44, 464, 515, 599, 779
MaeII	ACGT	1 cut(s)	398
MaeIII	GTNAC	2 cut(s)	433, 543
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MboII	GAAGA	2 cut(s)	16, 406
MflI	RGATCY	1 cut(s)	70
MhlI	GDGCHC	2 cut(s)	472, 708
MlsI	TGGCCA	1 cut(s)	620
MluCI	AATT	2 cut(s)	155, 714
MluNI	TGGCCA	1 cut(s)	620
MlyI	GAGTC	1 cut(s)	281
MmeI	TCCRAC	1 cut(s)	759
MnlI	CCTC	5 cut(s)	6, 184, 205, 236, 354
Mox20I	TGGCCA	1 cut(s)	620
MscI	TGGCCA	1 cut(s)	620
MseI	TTAA	1 cut(s)	486
MslI	CAYNNNNRTG	1 cut(s)	626
Msp20I	TGGCCA	1 cut(s)	620
MspA1I	CMGCKG	1 cut(s)	329
MwoI	GCNNNNNNNGC	3 cut(s)	54, 149, 267
NcoI	CCATGG	1 cut(s)	199
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	1 cut(s)	203
NlaIV	GGNNCC	2 cut(s)	504, 733
NmuCI	GTSAC	2 cut(s)	433, 543
PfeI	GAWTC	2 cut(s)	511, 775
PkrI	GCNGC	4 cut(s)	56, 67, 328, 331
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
Psp124BI	GAGCTC	2 cut(s)	472, 708
PspN4I	GGNNCC	2 cut(s)	504, 733
PstI	CTGCAG	1 cut(s)	70
PsuI	RGATCY	1 cut(s)	70
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
RseI	CAYNNNNRTG	1 cut(s)	626
SacI	GAGCTC	2 cut(s)	472, 708
SaqAI	TTAA	1 cut(s)	486
SatI	GCNGC	4 cut(s)	55, 66, 327, 330
Sau3AI	GATC	1 cut(s)	70
SchI	GAGTC	1 cut(s)	281
SduI	GDGCHC	2 cut(s)	472, 708
SfaNI	GCATC	1 cut(s)	130
SfcI	CTRYAG	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	626
SmlI	CTYRAG	3 cut(s)	216, 271, 358
SmoI	CTYRAG	3 cut(s)	216, 271, 358
Sse9I	AATT	2 cut(s)	155, 714
SsiI	CCGC	1 cut(s)	304
SspI	AATATT	2 cut(s)	136, 484
SspMI	CTAG	5 cut(s)	44, 464, 515, 599, 779
SstI	GAGCTC	2 cut(s)	472, 708
StyI	CCWWGG	1 cut(s)	199
TaaI	ACNGT	1 cut(s)	740
TaiI	ACGT	1 cut(s)	401
TaqI	TCGA	2 cut(s)	658, 670
TasI	AATT	2 cut(s)	155, 714
TfiI	GAWTC	2 cut(s)	511, 775
Tru1I	TTAA	1 cut(s)	486
Tru9I	TTAA	1 cut(s)	486
TscAI	CASTG	2 cut(s)	617, 633
TseFI	GTSAC	2 cut(s)	433, 543
TseI	GCWGC	4 cut(s)	54, 65, 326, 329
Tsp45I	GTSAC	2 cut(s)	433, 543
TspDTI	ATGAA	4 cut(s)	17, 370, 761, 777
TspRI	CASTG	2 cut(s)	617, 633
XspI	CTAG	5 cut(s)	44, 464, 515, 599, 779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.