Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0016132

Physical Location & Seq

Genomic Coordinates Forward (+)

41285054 .. 41288314

Gene Structure 3261 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0266100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1884 bp

ATGGACTCCGGAAAAGCCATGGCCTCTACTCCTGCTACTACCCAATTGACCCCTTTCAAGTACTCCAATCGGGTCCTCTTGAAAACCATCTTGGAACGCAGTGATGGCGGCCTGGAGCTGATTGGTCAGAGAGTTCTCATCGGAGGGTGGGTCAAGTCCTCCAAGGAGGTCATGAAACAAACTCCTCCTCCGCCGCAGCCACCGGCAGCCGATCATGAGACGGCTCGAGAACCCGAGCGAAAATCAGACGTCAGCTGTGTCGAAATACTTCAATCTCGGATACCATTTCTGAGAACCATTGTGAAGGTCTTGGGTGGAAGCAGCTCCTCCAGCAACACTCTTCGAGAAAGGCTCGATGCGGTGCTTAAGCCGGCGCCGCCCTCCACGGCATTCTTGAAAGTCAGTGATGGTTCTTGTCCTGCAATTCTTCAGGTAATTGTTGAATCGTCTATAGTCCCGCCGTGCCAGCTGTTGCATACCGGGACTTGCATCACGGTGGAAGGTGTGCTGCAGCAATCTTTAATGCAAGGCAAACATGTTGTTGAGCTGAGAGTGGAGAAAGTGCTTCATATTGGAACAGTTGATTACAGCAAGTATCCCTTGTCCAAGAAGAGAGTGCCAATTGAGAAGTTAAGGGAGTGTTTCCACATTCGCGCTCGGACAACCACGGTGGGATCTGTTATGCGAATCAGAAGTGCCCTGACTTTTGGGGCTCATACATTTTGTCACAACCATGGTTTTATTTCTGTGCAAGTACCCATTTTAACTACAACAGACTGCAACGGGTTCAGTGAAAAGTACAAGGTCACTGGTCTTTTTGACAAGGCAGGTCAAACGGAGGAACCTAAAGCCATTGCTGAAATTGAAGGTGTTAGCCTTGAAGCTATTAAGGCTGCTGCAAAAGAGAAGAGTACCTTAGTAGAGGAACTCAAGAGGACTGATAGCAATAAGGAAGCTCTGGCCGCTGCAGTACAGGATTTAAGGAAGACAAACGAATTGGCATCACAATTGGAAGCAAGAGAAAAATCAAAACTGAAAACTTCTCAAAAGCTTGACAATGTTAAGTCTTCCGAAGGTTCCTCCTCCTCCTCCCAAACTTTTCTAACCGTTTCTGGACGCCTGCATCTGGAGAGCTATGCATGTTCCCTTGGAAATGTTTACTCCTTCGGTCCCAGATTTCGAGCAGATAAAGGAGAGTCCCCGAAACATGTCCCGGAAATGTTGATGTTTGAAATTGAAATGGCTTTTTCACAACTAGAGGACGTAATGAATTGTGCAGATGACTTTTTCAAGTTCCTCTGCAAATGGGTGTTGGAAAATTGTCCGGAAGATATGAAATTTGTTACTGAAAGAATAGACAAGAACAGGATTGATCGTCTTCAATCAGTGATTTCAAGTTCATTTGAAAGAATTTCCTATGCTGAAGCATTAAATGTTTTAAACAAGGTTACGGATAAGAAAGTTGAAACAAAGTTACAGTGGGGTGCTGCATTAACAGAAGAAGATTTAAGTCATTTGTCTGATGAGATCTACAAGAGGCCTGTAATTGTATACAATTATCCAAAAGAAGCTAAGCCATTCTATGTACGGCTGAATGATGATGGAAAAACAGTTGCAGCATTTGATATGGTTGTACCAAAGATCGGAAAGTTAATTTCTGGTAGCCAAAATGAGGAGCGCACCCATATACTAAGTACAAGGATCAAGGATTTGGGGTTGCCAAGAGAGCAGTATGAATGGTACTTGGATCTTCGCAGGCATGGAACTGTTAAGCACTCTGGCTTCAGTCTTGAGTTTGATCTTATGGTTCTCTTTGCCACTGGCCTTACTGATGTAAGAGATGCTATCCCCTTTCCCAGAAGTTATGGCAAAGCAAACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010257 GO:0010258 GO:0010598 GO:0016020 GO:0016043 GO:0022607 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NdhM

Protein Analysis

627

Amino Acids

69.96

Weight (kDa)

8.54

Isoelectric Point (pI)

48.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2	PF00152	365 - 620	8.1e-39	tRNA synthetases class II (D, K and N)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37925
fragaria_vesca	FvH4_2g27960
malus_domestica	MD15G1133300.v1.1
prunus_persica	Prupe.1G488900_v2.0.a1
pyrus_communis	pycom15g12020
rosa_chinensis	RchiOBHm_Chr6g0296781
rosa_laevigata	RLG00000011659
rosa_multiflora	Rmu_ssc0000192.1_g000012
rosa_roxburghii	Rroxscaffold_7G00171170
rosa_rugosa	Rorug06G0266100 Rorug06G0266200
rosa_samantha	Rh6AG377200 Rh6BG385400 Rh6DG377700
rosa_wichuraiana	Rw6G032960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	252
Acc36I	ACCTGC	1 cut(s)	818
AccB1I	GGYRCC	1 cut(s)	373
AccI	GTMKAC	1 cut(s)	1551
AccII	CGCG	1 cut(s)	654
AccIII	TCCGGA	2 cut(s)	8, 1324
AciI	CCGC	7 cut(s)	108, 191, 194, 359, 377, 458, 963
AclWI	GGATC	3 cut(s)	682, 1709, 1755
AcoI	YGGCCR	1 cut(s)	960
AcsI	RAATTY	2 cut(s)	1337, 1410
AcuI	CTGAAG	3 cut(s)	413, 1443, 1768
AcyI	GRCGYC	3 cut(s)	249, 374, 1117
AfaI	GTAC	9 cut(s)	62, 756, 800, 913, 972, 1587, 1635, 1696, 1742
AfiI	CCNNNNNNNGG	3 cut(s)	1126, 1643, 1672
AflII	CTTAAG	1 cut(s)	365
AflIII	ACRYGT	2 cut(s)	535, 1207
AjnI	CCWGG	1 cut(s)	111
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	3 cut(s)	682, 1709, 1755
Ama87I	CYCGRG	2 cut(s)	225, 233
Aor13HI	TCCGGA	2 cut(s)	8, 1324
AoxI	GGCC	5 cut(s)	21, 109, 960, 1538, 1822
ApoI	RAATTY	2 cut(s)	1337, 1410
Asp700I	GAANNNNTTC	1 cut(s)	267
AspLEI	GCGC	3 cut(s)	376, 656, 1680
AspS9I	GGNCC	2 cut(s)	73, 1169
AsuC2I	CCSGG	2 cut(s)	481, 1214
AvaI	CYCGRG	2 cut(s)	225, 233
AvaII	GGWCC	2 cut(s)	73, 1169
BaeGI	GKGCMC	1 cut(s)	700
BanI	GGYRCC	1 cut(s)	373
BanII	GRGCYC	1 cut(s)	715
BbsI	GAAGAC	3 cut(s)	992, 1059, 1370
BccI	CCATC	4 cut(s)	95, 98, 401, 1595
BceAI	ACGGC	4 cut(s)	237, 402, 445, 1604
BciT130I	CCWGG	1 cut(s)	113
BciVI	GTATCC	2 cut(s)	273, 606
BcnI	CCSGG	2 cut(s)	481, 1214
BcoDI	GTCTC	1 cut(s)	212
BfaI	CTAG	2 cut(s)	1256, 1882
BfmI	CTRYAG	3 cut(s)	450, 509, 966
BfoI	RGCGCY	1 cut(s)	377
BfrI	CTTAAG	1 cut(s)	365
BfuAI	ACCTGC	1 cut(s)	818
BfuI	GTATCC	2 cut(s)	273, 606
BglII	AGATCT	1 cut(s)	1527
BlpI	GCTNAGC	1 cut(s)	1572
BmcAI	AGTACT	1 cut(s)	62
Bme1390I	CCNGG	3 cut(s)	113, 481, 1214
Bme18I	GGWCC	2 cut(s)	73, 1169
BmeT110I	CYCGRG	2 cut(s)	225, 233
BmgT120I	GGNCC	2 cut(s)	73, 1169
BmiI	GGNNCC	5 cut(s)	74, 375, 843, 1078, 1171
BmrFI	CCNGG	3 cut(s)	113, 481, 1214
BmsI	GCATC	5 cut(s)	346, 498, 1010, 1132, 1831
BpiI	GAAGAC	3 cut(s)	992, 1059, 1370
BplI	GAGNNNNNCTC	2 cut(s)	336, 368
BpmI	CTGGAG	3 cut(s)	134, 313, 1148
Bpu1102I	GCTNAGC	1 cut(s)	1572
BpuEI	CTTGAG	2 cut(s)	914, 1811
BpuMI	CCSGG	2 cut(s)	481, 1214
BsaHI	GRCGYC	3 cut(s)	249, 374, 1117
BsaJI	CCNNGG	6 cut(s)	18, 162, 384, 666, 733, 1147
BsaWI	WCCGGW	2 cut(s)	8, 1324
BsaXI	ACNNNNNCTCC	4 cut(s)	135, 165, 172, 202
Bsc4I	CCNNNNNNNGG	3 cut(s)	1126, 1643, 1672
Bse118I	RCCGGY	2 cut(s)	202, 370
Bse1I	ACTGG	2 cut(s)	814, 1825
Bse3DI	GCAATG	1 cut(s)	852
BseAI	TCCGGA	2 cut(s)	8, 1324
BseBI	CCWGG	1 cut(s)	113
BseDI	CCNNGG	6 cut(s)	18, 162, 384, 666, 733, 1147
BseLI	CCNNNNNNNGG	3 cut(s)	1126, 1643, 1672
BseMI	GCAATG	1 cut(s)	852
BseMII	CTCAG	2 cut(s)	281, 539
BseNI	ACTGG	2 cut(s)	814, 1825
BseRI	GAGGAG	7 cut(s)	174, 177, 316, 1072, 1075, 1078, 1688
BseSI	GKGCMC	1 cut(s)	700
BsgI	GTGCAG	1 cut(s)	1296
Bsh1236I	CGCG	1 cut(s)	654
BshFI	GGCC	5 cut(s)	23, 111, 962, 1540, 1824
BshNI	GGYRCC	1 cut(s)	373
BsiHKCI	CYCGRG	2 cut(s)	225, 233
BsiSI	CCGG	6 cut(s)	9, 203, 371, 480, 1214, 1325
BslFI	GGGAC	5 cut(s)	440, 496, 1155, 1183, 1196
BslI	CCNNNNNNNGG	3 cut(s)	1126, 1643, 1672
BsmAI	GTCTC	1 cut(s)	212
BsmBI	CGTCTC	1 cut(s)	212
BsmFI	GGGAC	5 cut(s)	440, 496, 1155, 1183, 1196
BsmI	GAATGC	1 cut(s)	389
BsnI	GGCC	5 cut(s)	23, 111, 962, 1540, 1824
BsoBI	CYCGRG	2 cut(s)	225, 233
Bsp1286I	GDGCHC	2 cut(s)	700, 715
Bsp13I	TCCGGA	2 cut(s)	8, 1324
Bsp143I	GATC	8 cut(s)	211, 674, 1372, 1527, 1641, 1701, 1747, 1798
Bsp1720I	GCTNAGC	1 cut(s)	1572
Bsp19I	CCATGG	2 cut(s)	18, 733
BspACI	CCGC	7 cut(s)	108, 191, 194, 359, 377, 458, 963
BspANI	GGCC	5 cut(s)	23, 111, 962, 1540, 1824
BspCNI	CTCAG	2 cut(s)	282, 540
BspEI	TCCGGA	2 cut(s)	8, 1324
BspFNI	CGCG	1 cut(s)	654
BspHI	TCATGA	2 cut(s)	171, 214
BspLI	GGNNCC	5 cut(s)	74, 375, 843, 1078, 1171
BspMAI	CTGCAG	2 cut(s)	513, 970
BspMI	ACCTGC	1 cut(s)	818
BspPI	GGATC	3 cut(s)	682, 1709, 1755
BspT107I	GGYRCC	1 cut(s)	373
BspTI	CTTAAG	1 cut(s)	365
BsrDI	GCAATG	1 cut(s)	852
BsrFI	RCCGGY	2 cut(s)	202, 370
BsrI	ACTGG	2 cut(s)	814, 1825
BssAI	RCCGGY	2 cut(s)	202, 370
BssECI	CCNNGG	6 cut(s)	18, 162, 384, 666, 733, 1147
BssMI	GATC	8 cut(s)	211, 674, 1372, 1527, 1641, 1701, 1747, 1798
BssNAI	GTATAC	1 cut(s)	1552
BssNI	GRCGYC	3 cut(s)	249, 374, 1117
BssT1I	CCWWGG	4 cut(s)	18, 162, 733, 1147
Bst1107I	GTATAC	1 cut(s)	1552
Bst2UI	CCWGG	1 cut(s)	113
Bst4CI	ACNGT	7 cut(s)	496, 580, 670, 1108, 1479, 1612, 1768
Bst6I	CTCTTC	3 cut(s)	345, 605, 902
BstACI	GRCGYC	3 cut(s)	249, 374, 1117
BstAFI	CTTAAG	1 cut(s)	365
BstC8I	GCNNGC	4 cut(s)	372, 467, 1121, 1757
BstDEI	CTNAG	5 cut(s)	290, 548, 916, 1572, 1691
BstDSI	CCRYGG	4 cut(s)	18, 384, 666, 733
BstFNI	CGCG	1 cut(s)	654
BstH2I	RGCGCY	1 cut(s)	377
BstHHI	GCGC	3 cut(s)	376, 656, 1680
BstKTI	GATC	8 cut(s)	214, 677, 1375, 1530, 1644, 1704, 1750, 1801
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	8 cut(s)	211, 674, 1372, 1527, 1641, 1701, 1747, 1798
BstMWI	GCNNNNNNNGC	7 cut(s)	105, 330, 376, 466, 890, 962, 1726
BstNI	CCWGG	1 cut(s)	113
BstNSI	RCATGY	3 cut(s)	539, 1143, 1211
BstSCI	CCNGG	3 cut(s)	111, 479, 1212
BstSFI	CTRYAG	3 cut(s)	450, 509, 966
BstSLI	GKGCMC	1 cut(s)	700
BstUI	CGCG	1 cut(s)	654
BstV2I	GAAGAC	3 cut(s)	992, 1059, 1370
BstX2I	RGATCY	3 cut(s)	674, 1527, 1747
BstYI	RGATCY	3 cut(s)	674, 1527, 1747
BstZ17I	GTATAC	1 cut(s)	1552
BsuI	GTATCC	2 cut(s)	273, 606
BsuRI	GGCC	5 cut(s)	23, 111, 962, 1540, 1824
BtgI	CCRYGG	4 cut(s)	18, 384, 666, 733
BtsI	GCAGTG	1 cut(s)	106
BtsIMutI	CAGTG	7 cut(s)	106, 409, 796, 807, 1392, 1484, 1818
BveI	ACCTGC	1 cut(s)	818
Cac8I	GCNNGC	4 cut(s)	372, 467, 1121, 1757
CciI	TCATGA	2 cut(s)	171, 214
CfoI	GCGC	3 cut(s)	376, 656, 1680
Cfr10I	RCCGGY	2 cut(s)	202, 370
Cfr13I	GGNCC	2 cut(s)	73, 1169
CseI	GACGC	1 cut(s)	1125
Csp6I	GTAC	9 cut(s)	61, 755, 799, 912, 971, 1586, 1634, 1695, 1741
CspCI	CAANNNNNGTGG	2 cut(s)	651, 686
CviAII	CATG	8 cut(s)	19, 172, 215, 536, 734, 1140, 1208, 1760
CviQI	GTAC	9 cut(s)	61, 755, 799, 912, 971, 1586, 1634, 1695, 1741
DdeI	CTNAG	5 cut(s)	290, 548, 916, 1572, 1691
DinI	GGCGCC	1 cut(s)	375
DpnI	GATC	8 cut(s)	213, 676, 1374, 1529, 1643, 1703, 1749, 1800
DpnII	GATC	8 cut(s)	211, 674, 1372, 1527, 1641, 1701, 1747, 1798
DraI	TTTAAA	1 cut(s)	1440
EaeI	YGGCCR	1 cut(s)	960
Eam1104I	CTCTTC	3 cut(s)	345, 605, 902
EarI	CTCTTC	3 cut(s)	345, 605, 902
EciI	GGCGGA	1 cut(s)	180
Eco130I	CCWWGG	4 cut(s)	18, 162, 733, 1147
Eco147I	AGGCCT	1 cut(s)	1540
Eco24I	GRGCYC	1 cut(s)	715
Eco47I	GGWCC	2 cut(s)	73, 1169
Eco57I	CTGAAG	3 cut(s)	413, 1443, 1768
Eco88I	CYCGRG	2 cut(s)	225, 233
EcoO109I	RGGNCCY	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	111
EcoT14I	CCWWGG	4 cut(s)	18, 162, 733, 1147
EcoT22I	ATGCAT	1 cut(s)	1141
EcoT38I	GRGCYC	1 cut(s)	715
EgeI	GGCGCC	1 cut(s)	375
EheI	GGCGCC	1 cut(s)	375
ErhI	CCWWGG	4 cut(s)	18, 162, 733, 1147
Esp3I	CGTCTC	1 cut(s)	212
FaeI	CATG	8 cut(s)	22, 175, 218, 539, 737, 1143, 1211, 1763
FalI	AAGNNNNNCTT	4 cut(s)	584, 616, 899, 931
FaqI	GGGAC	5 cut(s)	440, 496, 1155, 1183, 1196
FatI	CATG	8 cut(s)	18, 171, 214, 535, 733, 1139, 1207, 1759
FauI	CCCGC	1 cut(s)	465
FblI	GTMKAC	1 cut(s)	1551
FriOI	GRGCYC	1 cut(s)	715
FspBI	CTAG	2 cut(s)	1256, 1882
GlaI	GCGC	3 cut(s)	375, 655, 1679
GsuI	CTGGAG	3 cut(s)	134, 313, 1148
HaeII	RGCGCY	1 cut(s)	377
HaeIII	GGCC	5 cut(s)	23, 111, 962, 1540, 1824
HapII	CCGG	6 cut(s)	9, 203, 371, 480, 1214, 1325
HgaI	GACGC	1 cut(s)	1125
HhaI	GCGC	3 cut(s)	376, 656, 1680
Hin1I	GRCGYC	3 cut(s)	249, 374, 1117
Hin1II	CATG	8 cut(s)	22, 175, 218, 539, 737, 1143, 1211, 1763
Hin6I	GCGC	3 cut(s)	374, 654, 1678
HinP1I	GCGC	3 cut(s)	374, 654, 1678
HindIII	AAGCTT	1 cut(s)	1049
HinfI	GANTC	4 cut(s)	5, 443, 687, 1196
HpaII	CCGG	6 cut(s)	9, 203, 371, 480, 1214, 1325
Hpy166II	GTNNAC	2 cut(s)	1159, 1552
Hpy8I	GTNNAC	2 cut(s)	1159, 1552
HpyAV	CCTTC	5 cut(s)	298, 494, 860, 1067, 1174
HpyCH4III	ACNGT	7 cut(s)	496, 580, 670, 1108, 1479, 1612, 1768
HpyCH4IV	ACGT	2 cut(s)	249, 1263
HpyF10VI	GCNNNNNNNGC	7 cut(s)	105, 330, 376, 466, 890, 962, 1726
HpyF3I	CTNAG	5 cut(s)	290, 548, 916, 1572, 1691
HpySE526I	ACGT	2 cut(s)	249, 1263
Hsp92I	GRCGYC	3 cut(s)	249, 374, 1117
Hsp92II	CATG	8 cut(s)	22, 175, 218, 539, 737, 1143, 1211, 1763
HspAI	GCGC	3 cut(s)	374, 654, 1678
KasI	GGCGCC	1 cut(s)	373
Kpn2I	TCCGGA	2 cut(s)	8, 1324
KroI	GCCGGC	1 cut(s)	370
KroNI	GCCGGC	1 cut(s)	372
Kzo9I	GATC	8 cut(s)	211, 674, 1372, 1527, 1641, 1701, 1747, 1798
LmnI	GCTCC	3 cut(s)	115, 329, 1675
LweI	GCATC	5 cut(s)	346, 498, 1010, 1132, 1831
MaeI	CTAG	2 cut(s)	1256, 1882
MaeII	ACGT	2 cut(s)	249, 1263
MaeIII	GTNAC	5 cut(s)	725, 805, 1342, 1447, 1473
MalI	GATC	8 cut(s)	213, 676, 1374, 1529, 1643, 1703, 1749, 1800
MboI	GATC	8 cut(s)	211, 674, 1372, 1527, 1641, 1701, 1747, 1798
MfeI	CAATTG	3 cut(s)	44, 621, 1007
MflI	RGATCY	3 cut(s)	674, 1527, 1747
MhlI	GDGCHC	2 cut(s)	700, 715
Mly113I	GGCGCC	1 cut(s)	374
MlyI	GAGTC	1 cut(s)	1205
MmeI	TCCRAC	1 cut(s)	1293
Mph1103I	ATGCAT	1 cut(s)	1141
MroI	TCCGGA	2 cut(s)	8, 1324
MroNI	GCCGGC	1 cut(s)	370
MroXI	GAANNNNTTC	1 cut(s)	267
MslI	CAYNNNNRTG	2 cut(s)	494, 732
MspA1I	CMGCKG	3 cut(s)	255, 469, 965
MspCI	CTTAAG	1 cut(s)	365
MspI	CCGG	6 cut(s)	9, 203, 371, 480, 1214, 1325
MspR9I	CCNGG	3 cut(s)	113, 481, 1214
MunI	CAATTG	3 cut(s)	44, 621, 1007
Mva1269I	GAATGC	1 cut(s)	389
MvaI	CCWGG	1 cut(s)	113
MvnI	CGCG	1 cut(s)	654
MwoI	GCNNNNNNNGC	7 cut(s)	105, 330, 376, 466, 890, 962, 1726
NaeI	GCCGGC	1 cut(s)	372
NarI	GGCGCC	1 cut(s)	374
NciI	CCSGG	2 cut(s)	481, 1214
NcoI	CCATGG	2 cut(s)	18, 733
NdeII	GATC	8 cut(s)	211, 674, 1372, 1527, 1641, 1701, 1747, 1798
NgoMIV	GCCGGC	1 cut(s)	370
NlaIII	CATG	8 cut(s)	22, 175, 218, 539, 737, 1143, 1211, 1763
NlaIV	GGNNCC	5 cut(s)	74, 375, 843, 1078, 1171
NmuCI	GTSAC	2 cut(s)	725, 805
NsiI	ATGCAT	1 cut(s)	1141
NspI	RCATGY	3 cut(s)	539, 1143, 1211
PaeR7I	CTCGAG	1 cut(s)	225
PagI	TCATGA	2 cut(s)	171, 214
PceI	AGGCCT	1 cut(s)	1540
PciI	ACATGT	2 cut(s)	535, 1207
PctI	GAATGC	1 cut(s)	389
PdiI	GCCGGC	1 cut(s)	372
PdmI	GAANNNNTTC	1 cut(s)	267
PfeI	GAWTC	2 cut(s)	443, 687
PfoI	TCCNGGA	1 cut(s)	1212
PleI	GAGTC	1 cut(s)	1204
PluTI	GGCGCC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	1204
PpuMI	RGGWCCY	1 cut(s)	73
PscI	ACATGT	2 cut(s)	535, 1207
Psp5II	RGGWCCY	1 cut(s)	73
Psp6I	CCWGG	1 cut(s)	111
PspGI	CCWGG	1 cut(s)	111
PspN4I	GGNNCC	5 cut(s)	74, 375, 843, 1078, 1171
PspPI	GGNCC	2 cut(s)	73, 1169
PspPPI	RGGWCCY	1 cut(s)	73
PstI	CTGCAG	2 cut(s)	513, 970
PsuI	RGATCY	3 cut(s)	674, 1527, 1747
PvuII	CAGCTG	2 cut(s)	255, 469
RsaI	GTAC	9 cut(s)	62, 756, 800, 913, 972, 1587, 1635, 1696, 1742
RsaNI	GTAC	9 cut(s)	61, 755, 799, 912, 971, 1586, 1634, 1695, 1741
RseI	CAYNNNNRTG	2 cut(s)	494, 732
Sau3AI	GATC	8 cut(s)	211, 674, 1372, 1527, 1641, 1701, 1747, 1798
Sau96I	GGNCC	2 cut(s)	73, 1169
ScaI	AGTACT	1 cut(s)	62
SchI	GAGTC	1 cut(s)	1205
ScrFI	CCNGG	3 cut(s)	113, 481, 1214
SduI	GDGCHC	2 cut(s)	700, 715
SfaNI	GCATC	5 cut(s)	346, 498, 1010, 1132, 1831
SfcI	CTRYAG	3 cut(s)	450, 509, 966
SfoI	GGCGCC	1 cut(s)	375
Sfr274I	CTCGAG	1 cut(s)	225
SinI	GGWCC	2 cut(s)	73, 1169
SlaI	CTCGAG	1 cut(s)	225
SmiMI	CAYNNNNRTG	2 cut(s)	494, 732
SmlI	CTYRAG	4 cut(s)	225, 365, 929, 1790
SmoI	CTYRAG	4 cut(s)	225, 365, 929, 1790
SseBI	AGGCCT	1 cut(s)	1540
SsiI	CCGC	7 cut(s)	108, 191, 194, 359, 377, 458, 963
SspDI	GGCGCC	1 cut(s)	373
SspMI	CTAG	2 cut(s)	1256, 1882
StuI	AGGCCT	1 cut(s)	1540
StyD4I	CCNGG	3 cut(s)	111, 479, 1212
StyI	CCWWGG	4 cut(s)	18, 162, 733, 1147
TaaI	ACNGT	7 cut(s)	496, 580, 670, 1108, 1479, 1612, 1768
TaiI	ACGT	2 cut(s)	252, 1266
TaqI	TCGA	5 cut(s)	226, 261, 343, 354, 1180
TaqII	GACCGA	1 cut(s)	1157
TatI	WGTACW	4 cut(s)	60, 798, 970, 1694
TauI	GCSGC	4 cut(s)	111, 196, 379, 965
TfiI	GAWTC	2 cut(s)	443, 687
TscAI	CASTG	7 cut(s)	106, 409, 796, 814, 1392, 1484, 1825
TseFI	GTSAC	2 cut(s)	725, 805
Tsp45I	GTSAC	2 cut(s)	725, 805
TspDTI	ATGAA	6 cut(s)	188, 557, 1283, 1349, 1389, 1749
TspGWI	ACGGA	2 cut(s)	851, 1466
TspRI	CASTG	7 cut(s)	106, 409, 796, 814, 1392, 1484, 1825
Vha464I	CTTAAG	1 cut(s)	365
VpaK11BI	GGWCC	2 cut(s)	73, 1169
XapI	RAATTY	2 cut(s)	1337, 1410
XceI	RCATGY	3 cut(s)	539, 1143, 1211
XhoI	CTCGAG	1 cut(s)	225
XmiI	GTMKAC	1 cut(s)	1551
XmnI	GAANNNNTTC	1 cut(s)	267
XspI	CTAG	2 cut(s)	1256, 1882
ZraI	GACGTC	1 cut(s)	250
ZrmI	AGTACT	1 cut(s)	62
Zsp2I	ATGCAT	1 cut(s)	1141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.