Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000192.1

Orthogroup ID

OG0016132

Physical Location & Seq

Genomic Coordinates Forward (+)

74424 .. 75558

Gene Structure 1135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000192.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atggcagcgacttcttcttatatggcttgtgcaaaattctctatgttgggttatgctggaagaagaatccaactgagaagcagaagagacttctttataagagctcagcagcaacctggtgaagtccaagaaccacaagaactgaaaatacaagaaccacaagtacagagagaaaaaggagagccaaaaggaacagtgccaaggccagtggagacacaattgaatgtgaagagtaggaacatggcgagagaatatggtggggattggcttagctgtgccacaaggcatgtgaggatttatgctgcttatatagacccagaaacctgtgcatttgatcagacacagatggataagctcaccattatacttgatccaaccaatgagtttgtgtggactccggagactaccaacaaggtctactcctacttccaagagcttgtggatcactatgagggtgcagatttgacagaatacactctgcgtctgattggttcagacatagagcactacataaggaagcttctctatgacggagaaatcaaatacaacatggatgcaagagtccttaacttcagcatgggtaagcctcgcgttatgttcaataacaacgaatttcaacctccggatgtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010257 GO:0010258 GO:0010598 GO:0016020 GO:0016043 GO:0022607 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NdhM

Protein Analysis

210

Amino Acids

24.45

Weight (kDa)

5.72

Isoelectric Point (pI)

48.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37925
fragaria_vesca	FvH4_2g27960
malus_domestica	MD15G1133300.v1.1
prunus_persica	Prupe.1G488900_v2.0.a1
pyrus_communis	pycom15g12020
rosa_chinensis	RchiOBHm_Chr6g0296781
rosa_laevigata	RLG00000011659
rosa_multiflora	Rmu_ssc0000192.1_g000012
rosa_roxburghii	Rroxscaffold_7G00171170
rosa_rugosa	Rorug06G0266100 Rorug06G0266200
rosa_samantha	Rh6AG377200 Rh6BG385400 Rh6DG377700
rosa_wichuraiana	Rw6G032960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	98
AccI	GTMKAC	1 cut(s)	417
AccII	CGCG	1 cut(s)	591
AccIII	TCCGGA	2 cut(s)	397, 622
AclWI	GGATC	2 cut(s)	365, 450
AcsI	RAATTY	2 cut(s)	35, 611
AcuI	CTGAAG	1 cut(s)	556
AfaI	GTAC	1 cut(s)	165
AgsI	TTSAA	3 cut(s)	223, 601, 617
AjnI	CCWGG	1 cut(s)	115
AluBI	AGCT	5 cut(s)	104, 273, 355, 436, 520
AluI	AGCT	5 cut(s)	104, 273, 355, 436, 520
Alw21I	GWGCWC	2 cut(s)	106, 507
Alw26I	GTCTC	3 cut(s)	81, 206, 395
AlwI	GGATC	2 cut(s)	365, 450
Aor13HI	TCCGGA	2 cut(s)	397, 622
AoxI	GGCC	1 cut(s)	203
ApeKI	GCWGC	3 cut(s)	5, 109, 302
ApoI	RAATTY	2 cut(s)	35, 611
AsuHPI	GGTGA	2 cut(s)	131, 349
BanII	GRGCYC	1 cut(s)	106
Bbv12I	GWGCWC	2 cut(s)	106, 507
BbvI	GCAGC	3 cut(s)	17, 121, 289
BccI	CCATC	1 cut(s)	340
BciT130I	CCWGG	1 cut(s)	117
BclI	TGATCA	1 cut(s)	334
BcoDI	GTCTC	3 cut(s)	81, 206, 395
BisI	GCNGC	3 cut(s)	6, 110, 303
BlpI	GCTNAGC	2 cut(s)	105, 269
BlsI	GCNGC	3 cut(s)	7, 111, 304
Bme1390I	CCNGG	1 cut(s)	117
BmrFI	CCNGG	1 cut(s)	117
BmsI	GCATC	1 cut(s)	544
Bpu1102I	GCTNAGC	2 cut(s)	105, 269
BsaJI	CCNNGG	1 cut(s)	200
BsaWI	WCCGGW	2 cut(s)	397, 622
Bse1I	ACTGG	1 cut(s)	206
BseAI	TCCGGA	2 cut(s)	397, 622
BseBI	CCWGG	1 cut(s)	117
BseDI	CCNNGG	1 cut(s)	200
BseGI	GGATG	2 cut(s)	559, 631
BseMII	CTCAG	2 cut(s)	65, 119
BseNI	ACTGG	1 cut(s)	206
BseXI	GCAGC	3 cut(s)	17, 121, 289
BsgI	GTGCAG	1 cut(s)	477
Bsh1236I	CGCG	1 cut(s)	591
BshFI	GGCC	1 cut(s)	205
BsiHKAI	GWGCWC	2 cut(s)	106, 507
BsiSI	CCGG	2 cut(s)	398, 623
BsmAI	GTCTC	3 cut(s)	81, 206, 395
BsnI	GGCC	1 cut(s)	205
Bsp1286I	GDGCHC	2 cut(s)	106, 507
Bsp13I	TCCGGA	2 cut(s)	397, 622
Bsp143I	GATC	3 cut(s)	334, 370, 442
Bsp1720I	GCTNAGC	2 cut(s)	105, 269
BspANI	GGCC	1 cut(s)	205
BspCNI	CTCAG	2 cut(s)	66, 118
BspEI	TCCGGA	2 cut(s)	397, 622
BspFNI	CGCG	1 cut(s)	591
BspPI	GGATC	2 cut(s)	365, 450
BsrI	ACTGG	1 cut(s)	206
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	3 cut(s)	334, 370, 442
BssT1I	CCWWGG	1 cut(s)	200
Bst2UI	CCWGG	1 cut(s)	117
Bst4CI	ACNGT	1 cut(s)	196
Bst6I	CTCTTC	2 cut(s)	79, 224
BstDEI	CTNAG	3 cut(s)	74, 105, 269
BstF5I	GGATG	2 cut(s)	559, 631
BstFNI	CGCG	1 cut(s)	591
BstKTI	GATC	3 cut(s)	337, 373, 445
BstMAI	GTCTC	3 cut(s)	81, 206, 395
BstMBI	GATC	3 cut(s)	334, 370, 442
BstNI	CCWGG	1 cut(s)	117
BstNSI	RCATGY	1 cut(s)	290
BstSCI	CCNGG	1 cut(s)	115
BstUI	CGCG	1 cut(s)	591
BstV1I	GCAGC	3 cut(s)	17, 121, 289
BsuRI	GGCC	1 cut(s)	205
BtsCI	GGATG	2 cut(s)	559, 631
BtsIMutI	CAGTG	2 cut(s)	201, 213
CseI	GACGC	1 cut(s)	470
CsiI	ACCWGGT	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	164
CspCI	CAANNNNNGTGG	2 cut(s)	189, 224
CviAII	CATG	4 cut(s)	241, 287, 550, 577
CviQI	GTAC	1 cut(s)	164
DdeI	CTNAG	3 cut(s)	74, 105, 269
DpnI	GATC	3 cut(s)	336, 372, 444
DpnII	GATC	3 cut(s)	334, 370, 442
Eam1104I	CTCTTC	2 cut(s)	79, 224
EarI	CTCTTC	2 cut(s)	79, 224
Ecl136II	GAGCTC	1 cut(s)	104
Eco130I	CCWWGG	1 cut(s)	200
Eco24I	GRGCYC	1 cut(s)	106
Eco53kI	GAGCTC	1 cut(s)	104
Eco57I	CTGAAG	1 cut(s)	556
EcoICRI	GAGCTC	1 cut(s)	104
EcoRII	CCWGG	1 cut(s)	115
EcoT14I	CCWWGG	1 cut(s)	200
EcoT38I	GRGCYC	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	200
FaeI	CATG	4 cut(s)	244, 290, 553, 580
FatI	CATG	4 cut(s)	240, 286, 549, 576
FbaI	TGATCA	1 cut(s)	334
FblI	GTMKAC	1 cut(s)	417
Fnu4HI	GCNGC	3 cut(s)	6, 110, 303
FokI	GGATG	1 cut(s)	566
FriOI	GRGCYC	1 cut(s)	106
Fsp4HI	GCNGC	3 cut(s)	6, 110, 303
GluI	GCNGC	3 cut(s)	6, 110, 303
HaeIII	GGCC	1 cut(s)	205
HapII	CCGG	2 cut(s)	398, 623
HgaI	GACGC	1 cut(s)	470
Hin1II	CATG	4 cut(s)	244, 290, 553, 580
HindIII	AAGCTT	1 cut(s)	518
HinfI	GANTC	3 cut(s)	66, 394, 561
HpaII	CCGG	2 cut(s)	398, 623
HphI	GGTGA	2 cut(s)	131, 349
Hpy166II	GTNNAC	2 cut(s)	393, 418
Hpy188I	TCNGA	3 cut(s)	339, 486, 496
Hpy188III	TCNNGA	2 cut(s)	398, 623
Hpy8I	GTNNAC	2 cut(s)	393, 418
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4V	TGCA	4 cut(s)	32, 329, 458, 557
HpyF3I	CTNAG	3 cut(s)	74, 105, 269
Hsp92II	CATG	4 cut(s)	244, 290, 553, 580
Kpn2I	TCCGGA	2 cut(s)	397, 622
Ksp22I	TGATCA	1 cut(s)	334
Kzo9I	GATC	3 cut(s)	334, 370, 442
LpnPI	CCDG	7 cut(s)	42, 102, 129, 219, 330, 337, 411
Lsp1109I	GCAGC	3 cut(s)	17, 121, 289
LweI	GCATC	1 cut(s)	544
MabI	ACCWGGT	1 cut(s)	115
MalI	GATC	3 cut(s)	336, 372, 444
MboI	GATC	3 cut(s)	334, 370, 442
MboII	GAAGA	5 cut(s)	6, 72, 75, 96, 241
MfeI	CAATTG	1 cut(s)	218
MhlI	GDGCHC	2 cut(s)	106, 507
MluCI	AATT	3 cut(s)	35, 218, 611
MlyI	GAGTC	2 cut(s)	388, 570
MmeI	TCCRAC	2 cut(s)	94, 398
MnlI	CCTC	4 cut(s)	285, 445, 597, 630
MroI	TCCGGA	2 cut(s)	397, 622
MseI	TTAA	1 cut(s)	567
MspI	CCGG	2 cut(s)	398, 623
MspR9I	CCNGG	1 cut(s)	117
MunI	CAATTG	1 cut(s)	218
MvaI	CCWGG	1 cut(s)	117
MvnI	CGCG	1 cut(s)	591
NdeII	GATC	3 cut(s)	334, 370, 442
NlaIII	CATG	4 cut(s)	244, 290, 553, 580
NspI	RCATGY	1 cut(s)	290
PfeI	GAWTC	1 cut(s)	66
PkrI	GCNGC	3 cut(s)	7, 111, 304
PleI	GAGTC	2 cut(s)	388, 569
PpsI	GAGTC	2 cut(s)	388, 569
PsiI	TTATAA	1 cut(s)	98
Psp124BI	GAGCTC	1 cut(s)	106
Psp6I	CCWGG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	115
PsrI	GAACNNNNNNTAC	4 cut(s)	132, 147, 164, 179
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
SacI	GAGCTC	1 cut(s)	106
SaqAI	TTAA	1 cut(s)	567
SatI	GCNGC	3 cut(s)	6, 110, 303
Sau3AI	GATC	3 cut(s)	334, 370, 442
SchI	GAGTC	2 cut(s)	388, 570
ScrFI	CCNGG	1 cut(s)	117
SduI	GDGCHC	2 cut(s)	106, 507
SetI	ASST	9 cut(s)	106, 118, 275, 326, 357, 417, 438, 522, 622
SexAI	ACCWGGT	1 cut(s)	115
SfaNI	GCATC	1 cut(s)	544
Sse9I	AATT	3 cut(s)	35, 218, 611
SstI	GAGCTC	1 cut(s)	106
StyD4I	CCNGG	1 cut(s)	115
StyI	CCWWGG	1 cut(s)	200
TaaI	ACNGT	1 cut(s)	196
TasI	AATT	3 cut(s)	35, 218, 611
TatI	WGTACW	1 cut(s)	163
TfiI	GAWTC	1 cut(s)	66
Tru1I	TTAA	1 cut(s)	567
Tru9I	TTAA	1 cut(s)	567
TscAI	CASTG	2 cut(s)	201, 213
TseI	GCWGC	3 cut(s)	5, 109, 302
TspGWI	ACGGA	1 cut(s)	546
TspRI	CASTG	2 cut(s)	201, 213
XapI	RAATTY	2 cut(s)	35, 611
XceI	RCATGY	1 cut(s)	290
XmiI	GTMKAC	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.