Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009997

Physical Location & Seq

Genomic Coordinates Forward (+)

42183765 .. 42185378

Gene Structure 1614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G512400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCGAAGTTGATTGTGCTGTTTGCTCTGTGTGTGCTTCCGGCTCTGGCCGTCGCCACGCGTCCCATGAGGACCCCATTCACGGTGGAAGGAAAGGTCTTCTGTGACCCTTGCCGTGCTGGGTTTGAGACCTCAGCCACCACCTACATTCCCGGTGCCACTGTTAGACTAGAATGCAGAGACAGGAAGACCATGGATATCCGATACACCAAAGAAGGGAGAACTGACTCAACAGGAACCTACAAGATCCCTGTCACAGAGGACCATGAGGACCAGTTTTGTGATGCTGTCCTTGTTAGCAGCTCTCAGAAGGACTGTGCGGCAGCTGCCCCAGGGCGTGACCGTGCACGTGTCATCCTCACCGGCTACAATGGCATTGCATCATACAACCGTTTTGCCAATGCAATGGGGTTCATGAAGAATGAAGCCGTGTCTGGTTGTGCCCAGATTCTCAAGCAATTGCAGGAGTTCGACGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

160

Amino Acids

17.48

Weight (kDa)

7.52

Isoelectric Point (pI)

27.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08685
fragaria_vesca	FvH4_5g37940
malus_domestica	MD04G1098000.v1.1 MD08G1178700.v1.1 MD08G1180600.v1.1 MD10G1148500.v1.1 MD13G1213300.v1.1 MD15G1364600.v1.1
prunus_persica	Prupe.1G512400_v2.0.a1
pyrus_communis	pycom08g15320 pycom15g32700
rosa_chinensis	RchiOBHm_Chr7g0239881
rosa_laevigata	RLG00000000722
rosa_multiflora	Rmu_sc0000540.1_g000055
rosa_roxburghii	Rroxscaffold_3G00220730
rosa_rugosa	Rorug07G0330800
rosa_samantha	Rh7AG484300 Rh7BG457400 Rh7CG501800 Rh7DG470000
rosa_wichuraiana	Rw7G040630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	155
AccII	CGCG	1 cut(s)	61
AciI	CCGC	1 cut(s)	320
AclWI	GGATC	1 cut(s)	241
AcoI	YGGCCR	1 cut(s)	48
AcvI	CACGTG	1 cut(s)	350
AfiI	CCNNNNNNNGG	2 cut(s)	82, 216
AflIII	ACRYGT	2 cut(s)	59, 349
AjnI	CCWGG	1 cut(s)	331
AluBI	AGCT	2 cut(s)	303, 326
AluI	AGCT	2 cut(s)	303, 326
Alw21I	GWGCWC	1 cut(s)	349
Alw26I	GTCTC	2 cut(s)	122, 174
Alw44I	GTGCAC	1 cut(s)	345
AlwI	GGATC	1 cut(s)	241
AoxI	GGCC	1 cut(s)	48
ApaLI	GTGCAC	1 cut(s)	345
ApeKI	GCWGC	3 cut(s)	300, 323, 326
AspS9I	GGNCC	3 cut(s)	72, 262, 271
AsuC2I	CCSGG	1 cut(s)	153
AsuHPI	GGTGA	1 cut(s)	352
AvaII	GGWCC	3 cut(s)	72, 262, 271
BaeGI	GKGCMC	2 cut(s)	349, 445
BanI	GGYRCC	1 cut(s)	155
BbrPI	CACGTG	1 cut(s)	350
BbsI	GAAGAC	2 cut(s)	91, 194
Bbv12I	GWGCWC	1 cut(s)	349
BbvCI	CCTCAGC	1 cut(s)	133
BbvI	GCAGC	3 cut(s)	312, 313, 335
BceAI	ACGGC	3 cut(s)	35, 99, 413
BciT130I	CCWGG	1 cut(s)	333
BcnI	CCSGG	1 cut(s)	153
BcoDI	GTCTC	2 cut(s)	122, 174
BfaI	CTAG	1 cut(s)	170
BisI	GCNGC	4 cut(s)	301, 321, 324, 327
BlsI	GCNGC	4 cut(s)	302, 322, 325, 328
Bme1390I	CCNGG	2 cut(s)	153, 333
Bme18I	GGWCC	3 cut(s)	72, 262, 271
BmgT120I	GGNCC	3 cut(s)	72, 262, 271
BmiI	GGNNCC	3 cut(s)	74, 157, 238
BmrFI	CCNGG	2 cut(s)	153, 333
BmsI	GCATC	2 cut(s)	274, 389
BpiI	GAAGAC	2 cut(s)	91, 194
Bpu10I	CCTNAGC	1 cut(s)	133
BpuEI	CTTGAG	1 cut(s)	437
BpuMI	CCSGG	1 cut(s)	153
BsaAI	YACGTR	1 cut(s)	350
BsaI	GGTCTC	1 cut(s)	122
BsaJI	CCNNGG	3 cut(s)	192, 331, 332
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 216
Bse118I	RCCGGY	1 cut(s)	362
Bse1I	ACTGG	1 cut(s)	274
Bse3DI	GCAATG	2 cut(s)	375, 411
BseBI	CCWGG	1 cut(s)	333
BseDI	CCNNGG	3 cut(s)	192, 331, 332
BseGI	GGATG	1 cut(s)	354
BseLI	CCNNNNNNNGG	2 cut(s)	82, 216
BseMI	GCAATG	2 cut(s)	375, 411
BseMII	CTCAG	2 cut(s)	147, 320
BseNI	ACTGG	1 cut(s)	274
BseSI	GKGCMC	2 cut(s)	349, 445
BseXI	GCAGC	3 cut(s)	312, 313, 335
BseYI	CCCAGC	1 cut(s)	119
Bsh1236I	CGCG	1 cut(s)	61
BshFI	GGCC	1 cut(s)	50
BshNI	GGYRCC	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	349
BsiSI	CCGG	3 cut(s)	41, 153, 363
BslFI	GGGAC	1 cut(s)	48
BslI	CCNNNNNNNGG	2 cut(s)	82, 216
BsmAI	GTCTC	2 cut(s)	122, 174
BsmFI	GGGAC	1 cut(s)	48
BsmI	GAATGC	1 cut(s)	179
BsnI	GGCC	1 cut(s)	50
Bso31I	GGTCTC	1 cut(s)	122
Bsp1286I	GDGCHC	2 cut(s)	349, 445
Bsp143I	GATC	1 cut(s)	246
Bsp19I	CCATGG	1 cut(s)	192
BspACI	CCGC	1 cut(s)	320
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	2 cut(s)	146, 319
BspFNI	CGCG	1 cut(s)	61
BspHI	TCATGA	1 cut(s)	414
BspLI	GGNNCC	3 cut(s)	74, 157, 238
BspPI	GGATC	1 cut(s)	241
BspT107I	GGYRCC	1 cut(s)	155
BspTNI	GGTCTC	1 cut(s)	122
BsrDI	GCAATG	2 cut(s)	375, 411
BsrFI	RCCGGY	1 cut(s)	362
BsrI	ACTGG	1 cut(s)	274
BssAI	RCCGGY	1 cut(s)	362
BssECI	CCNNGG	3 cut(s)	192, 331, 332
BssMI	GATC	1 cut(s)	246
BssT1I	CCWWGG	1 cut(s)	192
Bst2UI	CCWGG	1 cut(s)	333
Bst4CI	ACNGT	5 cut(s)	85, 163, 317, 344, 392
BstBAI	YACGTR	1 cut(s)	350
BstDEI	CTNAG	2 cut(s)	133, 306
BstDSI	CCRYGG	1 cut(s)	192
BstF5I	GGATG	1 cut(s)	354
BstFNI	CGCG	1 cut(s)	61
BstKTI	GATC	1 cut(s)	249
BstMAI	GTCTC	2 cut(s)	122, 174
BstMBI	GATC	1 cut(s)	246
BstMWI	GCNNNNNNNGC	2 cut(s)	326, 372
BstNI	CCWGG	1 cut(s)	333
BstSCI	CCNGG	2 cut(s)	151, 331
BstSLI	GKGCMC	2 cut(s)	349, 445
BstUI	CGCG	1 cut(s)	61
BstV1I	GCAGC	3 cut(s)	312, 313, 335
BstV2I	GAAGAC	2 cut(s)	91, 194
BstX2I	RGATCY	1 cut(s)	246
BstXI	CCANNNNNNTGG	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	246
BsuRI	GGCC	1 cut(s)	50
BtgI	CCRYGG	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	354
BtsIMutI	CAGTG	1 cut(s)	159
CciI	TCATGA	1 cut(s)	414
Cfr10I	RCCGGY	1 cut(s)	362
Cfr13I	GGNCC	3 cut(s)	72, 262, 271
CseI	GACGC	1 cut(s)	50
CviAII	CATG	4 cut(s)	67, 193, 266, 415
CviJI	RGCY	7 cut(s)	44, 50, 137, 303, 326, 366, 428
CviKI_1	RGCY	7 cut(s)	44, 50, 137, 303, 326, 366, 428
DdeI	CTNAG	2 cut(s)	133, 306
DpnI	GATC	1 cut(s)	248
DpnII	GATC	1 cut(s)	246
EaeI	YGGCCR	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	192
Eco31I	GGTCTC	1 cut(s)	122
Eco32I	GATATC	1 cut(s)	199
Eco47I	GGWCC	3 cut(s)	72, 262, 271
Eco72I	CACGTG	1 cut(s)	350
EcoO109I	RGGNCCY	1 cut(s)	72
EcoRII	CCWGG	1 cut(s)	331
EcoRV	GATATC	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	4 cut(s)	70, 196, 269, 418
FaiI	YATR	5 cut(s)	68, 194, 267, 385, 416
FaqI	GGGAC	1 cut(s)	48
FatI	CATG	4 cut(s)	66, 192, 265, 414
Fnu4HI	GCNGC	4 cut(s)	301, 321, 324, 327
FokI	GGATG	1 cut(s)	341
Fsp4HI	GCNGC	4 cut(s)	301, 321, 324, 327
FspBI	CTAG	1 cut(s)	170
GluI	GCNGC	4 cut(s)	301, 321, 324, 327
GsaI	CCCAGC	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	3 cut(s)	41, 153, 363
HgaI	GACGC	1 cut(s)	50
Hin1II	CATG	4 cut(s)	70, 196, 269, 418
HinfI	GANTC	2 cut(s)	227, 448
HpaII	CCGG	3 cut(s)	41, 153, 363
HphI	GGTGA	1 cut(s)	352
Hpy166II	GTNNAC	1 cut(s)	347
Hpy188I	TCNGA	2 cut(s)	203, 309
Hpy188III	TCNNGA	1 cut(s)	415
Hpy8I	GTNNAC	1 cut(s)	347
Hpy99I	CGWCG	2 cut(s)	56, 476
HpyAV	CCTTC	3 cut(s)	83, 209, 304
HpyCH4III	ACNGT	5 cut(s)	85, 163, 317, 344, 392
HpyCH4IV	ACGT	1 cut(s)	349
HpyCH4V	TGCA	5 cut(s)	177, 347, 380, 404, 463
HpyF10VI	GCNNNNNNNGC	2 cut(s)	326, 372
HpyF3I	CTNAG	2 cut(s)	133, 306
HpySE526I	ACGT	1 cut(s)	349
Hsp92II	CATG	4 cut(s)	70, 196, 269, 418
Kzo9I	GATC	1 cut(s)	246
Lsp1109I	GCAGC	3 cut(s)	312, 313, 335
LweI	GCATC	2 cut(s)	274, 389
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	1 cut(s)	349
MaeIII	GTNAC	3 cut(s)	104, 253, 338
MalI	GATC	1 cut(s)	248
MboI	GATC	1 cut(s)	246
MboII	GAAGA	3 cut(s)	91, 199, 430
MfeI	CAATTG	1 cut(s)	458
MflI	RGATCY	1 cut(s)	246
MhlI	GDGCHC	2 cut(s)	349, 445
MluCI	AATT	1 cut(s)	458
MluI	ACGCGT	1 cut(s)	59
MlyI	GAGTC	1 cut(s)	221
MnlI	CCTC	5 cut(s)	63, 142, 253, 262, 368
MspA1I	CMGCKG	1 cut(s)	326
MspI	CCGG	3 cut(s)	41, 153, 363
MspR9I	CCNGG	2 cut(s)	153, 333
MunI	CAATTG	1 cut(s)	458
Mva1269I	GAATGC	1 cut(s)	179
MvaI	CCWGG	1 cut(s)	333
MvnI	CGCG	1 cut(s)	61
MwoI	GCNNNNNNNGC	2 cut(s)	326, 372
NciI	CCSGG	1 cut(s)	153
NcoI	CCATGG	1 cut(s)	192
NdeII	GATC	1 cut(s)	246
NlaIII	CATG	4 cut(s)	70, 196, 269, 418
NlaIV	GGNNCC	3 cut(s)	74, 157, 238
NmuCI	GTSAC	3 cut(s)	104, 253, 338
PagI	TCATGA	1 cut(s)	414
PasI	CCCWGGG	1 cut(s)	332
PctI	GAATGC	1 cut(s)	179
PfeI	GAWTC	1 cut(s)	448
PkrI	GCNGC	4 cut(s)	302, 322, 325, 328
PleI	GAGTC	1 cut(s)	221
PmaCI	CACGTG	1 cut(s)	350
PmlI	CACGTG	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	221
Ppu21I	YACGTR	1 cut(s)	350
PpuMI	RGGWCCY	1 cut(s)	72
Psp5II	RGGWCCY	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	331
PspCI	CACGTG	1 cut(s)	350
PspFI	CCCAGC	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	331
PspN4I	GGNNCC	3 cut(s)	74, 157, 238
PspPI	GGNCC	3 cut(s)	72, 262, 271
PspPPI	RGGWCCY	1 cut(s)	72
PsuI	RGATCY	1 cut(s)	246
PvuII	CAGCTG	1 cut(s)	326
SatI	GCNGC	4 cut(s)	301, 321, 324, 327
Sau3AI	GATC	1 cut(s)	246
Sau96I	GGNCC	3 cut(s)	72, 262, 271
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	2 cut(s)	153, 333
SduI	GDGCHC	2 cut(s)	349, 445
SetI	ASST	7 cut(s)	99, 134, 146, 242, 305, 328, 352
SfaNI	GCATC	2 cut(s)	274, 389
SinI	GGWCC	3 cut(s)	72, 262, 271
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
Sse9I	AATT	1 cut(s)	458
SsiI	CCGC	1 cut(s)	320
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	2 cut(s)	151, 331
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	5 cut(s)	85, 163, 317, 344, 392
TaiI	ACGT	1 cut(s)	352
TaqI	TCGA	1 cut(s)	471
TasI	AATT	1 cut(s)	458
TauI	GCSGC	1 cut(s)	323
TfiI	GAWTC	1 cut(s)	448
TscAI	CASTG	1 cut(s)	166
TseFI	GTSAC	3 cut(s)	104, 253, 338
TseI	GCWGC	3 cut(s)	300, 323, 326
Tsp45I	GTSAC	3 cut(s)	104, 253, 338
TspDTI	ATGAA	3 cut(s)	403, 431, 438
TspRI	CASTG	1 cut(s)	166
VneI	GTGCAC	1 cut(s)	345
VpaK11BI	GGWCC	3 cut(s)	72, 262, 271
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.