pycom08g15320

Pollen-specific protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0009997
Physical Location & Seq
Forward (+)
14964685 .. 14966541
1857 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g15320.1

Sequence Viewer

Length: 705 bp
ATGGAAATGACCGAAAACCCACATCTCACCACGTGGCGCGTAGGCAAAAGCCCCGTTACGCGGTATCAAATTTTCCGATTATTACTGAAACTTTTTCCCCCACCAGCATCATCACACATTCTCTCTCTTTTCATATCTCTCACTCCTCTGCATTTCCCTTCTGCAATCTTCTTCTCTCTCAATTCTCTCTGCCAAAACGAAGTGAAAAGACAGAAAACGGCTTCAATGGCGAAATTGTTTCTGCTAATTGCTCTGTGCGTGCTTCCGGCTCTGGCCGCCGCCACGCGTCCCATGAGAACCCCGTTCACGGTGGAGGGAAAGGTGTACTGCGACACTTGCCGCGCTGGGTACGAGACCAAGGCCATCACCTACATTGCCGGTGCCAAGGTTAGACTGGAATGCAGAGACAAGAACAGCATGGCACTCCTGTACACCAAAGAAGGGACAACCAACTCAGCAGGTTGCTATAAGATCCCAGTCGCAGAGGACCATTTGGACCAATTCTGTGATGCAGTCCTTGTCAGCAGCCCTCAGAAGGACTGTGCAACAGTTTCCCCAGGGCGCGAGCGTGCACGTGTCATCCTCACCGCCAACAATGGTATTGCTTCGTACAATCGGTTTGCCAATGCTATGGGTTTCATGAGGACCGAAGCCTTGTCTGGCTGCACCCAGATTCTCAAGGAATTGCAGGAGCTTGACGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

235

Amino Acids

25.96

Weight (kDa)

8.96

Isoelectric Point (pI)

32.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 104 - 185 4.2e-17 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 449
AccB1I GGYRCC 1 cut(s) 380
AccII CGCG 5 cut(s) 39, 61, 286, 342, 564
AciI CCGC 5 cut(s) 61, 276, 279, 340, 588
AclWI GGATC 1 cut(s) 466
AcoI YGGCCR 1 cut(s) 273
AcsI RAATTY 1 cut(s) 69
AcvI CACGTG 2 cut(s) 33, 575
AdeI CACNNNGTG 1 cut(s) 33
AfaI GTAC 4 cut(s) 326, 350, 431, 611
AfiI CCNNNNNNNGG 4 cut(s) 60, 307, 441, 535
AflIII ACRYGT 2 cut(s) 284, 574
AgsI TTSAA 1 cut(s) 225
AjnI CCWGG 1 cut(s) 556
AluBI AGCT 1 cut(s) 694
AluI AGCT 1 cut(s) 694
Alw21I GWGCWC 1 cut(s) 574
Alw26I GTCTC 2 cut(s) 347, 399
Alw44I GTGCAC 1 cut(s) 570
AlwI GGATC 1 cut(s) 466
AoxI GGCC 2 cut(s) 273, 360
ApaLI GTGCAC 1 cut(s) 570
ApeKI GCWGC 2 cut(s) 525, 663
ApoI RAATTY 1 cut(s) 69
AspLEI GCGC 3 cut(s) 39, 344, 564
AspS9I GGNCC 3 cut(s) 487, 496, 645
AsuHPI GGTGA 3 cut(s) 19, 358, 577
AvaII GGWCC 3 cut(s) 487, 496, 645
BaeGI GKGCMC 1 cut(s) 574
BanI GGYRCC 1 cut(s) 380
BbrPI CACGTG 2 cut(s) 33, 575
Bbv12I GWGCWC 1 cut(s) 574
BbvI GCAGC 2 cut(s) 537, 650
BccI CCATC 1 cut(s) 371
BceAI ACGGC 1 cut(s) 234
BciT130I CCWGG 1 cut(s) 558
BcoDI GTCTC 2 cut(s) 347, 399
BfuAI ACCTGC 1 cut(s) 449
BisI GCNGC 5 cut(s) 276, 279, 340, 526, 664
BlsI GCNGC 5 cut(s) 277, 280, 341, 527, 665
Bme1390I CCNGG 1 cut(s) 558
Bme18I GGWCC 3 cut(s) 487, 496, 645
BmgT120I GGNCC 3 cut(s) 487, 496, 645
BmiI GGNNCC 1 cut(s) 382
BmrFI CCNGG 1 cut(s) 558
BmrI ACTGGG 1 cut(s) 470
BmsI GCATC 2 cut(s) 116, 499
BmuI ACTGGG 1 cut(s) 470
BpuEI CTTGAG 1 cut(s) 662
BsaAI YACGTR 2 cut(s) 33, 575
BsaI GGTCTC 1 cut(s) 347
BsaJI CCNNGG 4 cut(s) 357, 384, 556, 557
Bsc4I CCNNNNNNNGG 4 cut(s) 60, 307, 441, 535
Bse118I RCCGGY 1 cut(s) 377
Bse1I ACTGG 2 cut(s) 399, 476
Bse3DI GCAATG 1 cut(s) 372
BseBI CCWGG 1 cut(s) 558
BseDI CCNNGG 4 cut(s) 357, 384, 556, 557
BseGI GGATG 1 cut(s) 579
BseLI CCNNNNNNNGG 4 cut(s) 60, 307, 441, 535
BseMI GCAATG 1 cut(s) 372
BseMII CTCAG 2 cut(s) 468, 545
BseNI ACTGG 2 cut(s) 399, 476
BseRI GAGGAG 1 cut(s) 135
BseSI GKGCMC 1 cut(s) 574
BseXI GCAGC 2 cut(s) 537, 650
BseYI CCCAGC 1 cut(s) 344
BsgI GTGCAG 1 cut(s) 649
Bsh1236I CGCG 5 cut(s) 39, 61, 286, 342, 564
BshFI GGCC 2 cut(s) 275, 362
BshNI GGYRCC 1 cut(s) 380
BsiHKAI GWGCWC 1 cut(s) 574
BsiSI CCGG 2 cut(s) 266, 378
BslFI GGGAC 2 cut(s) 273, 457
BslI CCNNNNNNNGG 4 cut(s) 60, 307, 441, 535
BsmAI GTCTC 2 cut(s) 347, 399
BsmFI GGGAC 2 cut(s) 273, 457
BsmI GAATGC 1 cut(s) 404
BsnI GGCC 2 cut(s) 275, 362
Bso31I GGTCTC 1 cut(s) 347
Bsp1286I GDGCHC 1 cut(s) 574
Bsp1407I TGTACA 1 cut(s) 429
Bsp143I GATC 1 cut(s) 471
BspACI CCGC 5 cut(s) 61, 276, 279, 340, 588
BspANI GGCC 2 cut(s) 275, 362
BspCNI CTCAG 2 cut(s) 467, 544
BspFNI CGCG 5 cut(s) 39, 61, 286, 342, 564
BspHI TCATGA 1 cut(s) 639
BspLI GGNNCC 1 cut(s) 382
BspMI ACCTGC 1 cut(s) 449
BspPI GGATC 1 cut(s) 466
BspT107I GGYRCC 1 cut(s) 380
BspTNI GGTCTC 1 cut(s) 347
BsrDI GCAATG 1 cut(s) 372
BsrFI RCCGGY 1 cut(s) 377
BsrGI TGTACA 1 cut(s) 429
BsrI ACTGG 2 cut(s) 399, 476
BssAI RCCGGY 1 cut(s) 377
BssECI CCNNGG 4 cut(s) 357, 384, 556, 557
BssMI GATC 1 cut(s) 471
BssT1I CCWWGG 2 cut(s) 357, 384
Bst2UI CCWGG 1 cut(s) 558
Bst4CI ACNGT 3 cut(s) 310, 542, 550
BstAUI TGTACA 1 cut(s) 429
BstBAI YACGTR 2 cut(s) 33, 575
BstC8I GCNNGC 3 cut(s) 260, 566, 570
BstDEI CTNAG 2 cut(s) 454, 531
BstF5I GGATG 1 cut(s) 579
BstFNI CGCG 5 cut(s) 39, 61, 286, 342, 564
BstHHI GCGC 3 cut(s) 39, 344, 564
BstKTI GATC 1 cut(s) 474
BstMAI GTCTC 2 cut(s) 347, 399
BstMBI GATC 1 cut(s) 471
BstMWI GCNNNNNNNGC 3 cut(s) 227, 275, 336
BstNI CCWGG 1 cut(s) 558
BstSCI CCNGG 1 cut(s) 556
BstSLI GKGCMC 1 cut(s) 574
BstUI CGCG 5 cut(s) 39, 61, 286, 342, 564
BstV1I GCAGC 2 cut(s) 537, 650
BstX2I RGATCY 1 cut(s) 471
BstXI CCANNNNNNTGG 1 cut(s) 631
BstYI RGATCY 1 cut(s) 471
BsuRI GGCC 2 cut(s) 275, 362
BtsCI GGATG 1 cut(s) 579
BveI ACCTGC 1 cut(s) 449
Cac8I GCNNGC 3 cut(s) 260, 566, 570
CciI TCATGA 1 cut(s) 639
CfoI GCGC 3 cut(s) 39, 344, 564
Cfr10I RCCGGY 1 cut(s) 377
Cfr13I GGNCC 3 cut(s) 487, 496, 645
CseI GACGC 1 cut(s) 275
Csp6I GTAC 4 cut(s) 325, 349, 430, 610
CviAII CATG 3 cut(s) 292, 418, 640
CviJI RGCY 9 cut(s) 51, 221, 269, 275, 362, 528, 653, 663, 694
CviKI_1 RGCY 9 cut(s) 51, 221, 269, 275, 362, 528, 653, 663, 694
CviQI GTAC 4 cut(s) 325, 349, 430, 610
DdeI CTNAG 2 cut(s) 454, 531
DpnI GATC 1 cut(s) 473
DpnII GATC 1 cut(s) 471
DraIII CACNNNGTG 1 cut(s) 33
EaeI YGGCCR 1 cut(s) 273
Eco130I CCWWGG 2 cut(s) 357, 384
Eco31I GGTCTC 1 cut(s) 347
Eco47I GGWCC 3 cut(s) 487, 496, 645
Eco72I CACGTG 2 cut(s) 33, 575
EcoRII CCWGG 1 cut(s) 556
EcoT14I CCWWGG 2 cut(s) 357, 384
ErhI CCWWGG 2 cut(s) 357, 384
FaeI CATG 3 cut(s) 295, 421, 643
FaiI YATR 6 cut(s) 134, 293, 419, 468, 632, 641
FaqI GGGAC 2 cut(s) 273, 457
FatI CATG 3 cut(s) 291, 417, 639
Fnu4HI GCNGC 5 cut(s) 276, 279, 340, 526, 664
FokI GGATG 1 cut(s) 566
Fsp4HI GCNGC 5 cut(s) 276, 279, 340, 526, 664
GlaI GCGC 3 cut(s) 38, 343, 563
GluI GCNGC 5 cut(s) 276, 279, 340, 526, 664
GsaI CCCAGC 1 cut(s) 348
HaeIII GGCC 2 cut(s) 275, 362
HapII CCGG 2 cut(s) 266, 378
HgaI GACGC 1 cut(s) 275
HhaI GCGC 3 cut(s) 39, 344, 564
Hin1II CATG 3 cut(s) 295, 421, 643
Hin6I GCGC 3 cut(s) 37, 342, 562
HinP1I GCGC 3 cut(s) 37, 342, 562
HinfI GANTC 1 cut(s) 673
HpaII CCGG 2 cut(s) 266, 378
HphI GGTGA 3 cut(s) 19, 358, 577
Hpy166II GTNNAC 4 cut(s) 306, 325, 432, 572
Hpy188I TCNGA 2 cut(s) 77, 534
Hpy188III TCNNGA 1 cut(s) 640
Hpy8I GTNNAC 4 cut(s) 306, 325, 432, 572
HpyAV CCTTC 3 cut(s) 168, 434, 529
HpyCH4III ACNGT 3 cut(s) 310, 542, 550
HpyCH4IV ACGT 2 cut(s) 32, 574
HpyCH4V TGCA 8 cut(s) 151, 164, 402, 512, 545, 572, 666, 688
HpyF10VI GCNNNNNNNGC 3 cut(s) 227, 275, 336
HpyF3I CTNAG 2 cut(s) 454, 531
HpySE526I ACGT 2 cut(s) 32, 574
Hsp92II CATG 3 cut(s) 295, 421, 643
HspAI GCGC 3 cut(s) 37, 342, 562
Kzo9I GATC 1 cut(s) 471
LmnI GCTCC 1 cut(s) 691
Lsp1109I GCAGC 2 cut(s) 537, 650
LweI GCATC 2 cut(s) 116, 499
MaeII ACGT 2 cut(s) 32, 574
MaeIII GTNAC 1 cut(s) 55
MalI GATC 1 cut(s) 473
MboI GATC 1 cut(s) 471
MboII GAAGA 2 cut(s) 160, 163
MflI RGATCY 1 cut(s) 471
MhlI GDGCHC 1 cut(s) 574
MluCI AATT 6 cut(s) 69, 181, 233, 246, 500, 683
MluI ACGCGT 1 cut(s) 284
MnlI CCTC 6 cut(s) 156, 307, 478, 540, 593, 636
MspI CCGG 2 cut(s) 266, 378
MspR9I CCNGG 1 cut(s) 558
Mva1269I GAATGC 1 cut(s) 404
MvaI CCWGG 1 cut(s) 558
MvnI CGCG 5 cut(s) 39, 61, 286, 342, 564
MwoI GCNNNNNNNGC 3 cut(s) 227, 275, 336
NdeII GATC 1 cut(s) 471
NlaIII CATG 3 cut(s) 295, 421, 643
NlaIV GGNNCC 1 cut(s) 382
PagI TCATGA 1 cut(s) 639
PasI CCCWGGG 1 cut(s) 557
PctI GAATGC 1 cut(s) 404
PfeI GAWTC 1 cut(s) 673
PkrI GCNGC 5 cut(s) 277, 280, 341, 527, 665
PmaCI CACGTG 2 cut(s) 33, 575
PmlI CACGTG 2 cut(s) 33, 575
Ppu21I YACGTR 2 cut(s) 33, 575
Psp6I CCWGG 1 cut(s) 556
PspCI CACGTG 2 cut(s) 33, 575
PspFI CCCAGC 1 cut(s) 344
PspGI CCWGG 1 cut(s) 556
PspN4I GGNNCC 1 cut(s) 382
PspPI GGNCC 3 cut(s) 487, 496, 645
PsuI RGATCY 1 cut(s) 471
RsaI GTAC 4 cut(s) 326, 350, 431, 611
RsaNI GTAC 4 cut(s) 325, 349, 430, 610
SatI GCNGC 5 cut(s) 276, 279, 340, 526, 664
Sau3AI GATC 1 cut(s) 471
Sau96I GGNCC 3 cut(s) 487, 496, 645
ScrFI CCNGG 1 cut(s) 558
SduI GDGCHC 1 cut(s) 574
SetI ASST 7 cut(s) 35, 324, 371, 390, 463, 577, 696
SfaNI GCATC 2 cut(s) 116, 499
SinI GGWCC 3 cut(s) 487, 496, 645
SmlI CTYRAG 1 cut(s) 677
SmoI CTYRAG 1 cut(s) 677
Sse9I AATT 6 cut(s) 69, 181, 233, 246, 500, 683
SsiI CCGC 5 cut(s) 61, 276, 279, 340, 588
StyD4I CCNGG 1 cut(s) 556
StyI CCWWGG 2 cut(s) 357, 384
TaaI ACNGT 3 cut(s) 310, 542, 550
TaiI ACGT 2 cut(s) 35, 577
TaqII GACCGA 2 cut(s) 26, 662
TasI AATT 6 cut(s) 69, 181, 233, 246, 500, 683
TatI WGTACW 2 cut(s) 324, 429
TauI GCSGC 3 cut(s) 278, 281, 342
TfiI GAWTC 1 cut(s) 673
TseI GCWGC 2 cut(s) 525, 663
TspDTI ATGAA 2 cut(s) 121, 628
VneI GTGCAC 1 cut(s) 570
VpaK11BI GGWCC 3 cut(s) 487, 496, 645
XapI RAATTY 1 cut(s) 69
XcmI CCANNNNNNNNNTGG 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.