Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000540.1

Orthogroup ID

OG0009997

Physical Location & Seq

Genomic Coordinates Forward (+)

238523 .. 240123

Gene Structure 1601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000540.1_g000055.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atggcgaagcttgtgatgctgttcgctctgtgcgtgctgccggctctggccgtcgccacccgtccgatgaggactccgttcaccgtccaaggaaaggtctactgcgacgcttgccgtttcggttacgagtcctccgccaccacctacattgccggtgctaaggttagagtggaatgcaaggacaagctgaccatggcacttaggtacagcaaagaagggacaactgactccaccggaacctacaggattactgttgcagaggaccatgaggaccagatctgtgattctatccttgtgagcagccctcagaagagctgttcagaagctaccccagggcgtgaccgtgctcgcgtcatccttaccggctacaatggcattgcatcatacaaccgtttggccaatgctatggggttcatgaggactgaggccgtgtctggttgttcccagattctcaagcagatgcaggagttggatgtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

159

Amino Acids

17.4

Weight (kDa)

8.47

Isoelectric Point (pI)

35.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08685
fragaria_vesca	FvH4_5g37940
malus_domestica	MD04G1098000.v1.1 MD08G1178700.v1.1 MD08G1180600.v1.1 MD10G1148500.v1.1 MD13G1213300.v1.1 MD15G1364600.v1.1
prunus_persica	Prupe.1G512400_v2.0.a1
pyrus_communis	pycom08g15320 pycom15g32700
rosa_chinensis	RchiOBHm_Chr7g0239881
rosa_laevigata	RLG00000000722
rosa_multiflora	Rmu_sc0000540.1_g000055
rosa_roxburghii	Rroxscaffold_3G00220730
rosa_rugosa	Rorug07G0330800
rosa_samantha	Rh7AG484300 Rh7BG457400 Rh7CG501800 Rh7DG470000
rosa_wichuraiana	Rw7G040630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	99
AccII	CGCG	1 cut(s)	351
AciI	CCGC	1 cut(s)	135
AcoI	YGGCCR	2 cut(s)	48, 396
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	1 cut(s)	94
AjnI	CCWGG	1 cut(s)	331
AluBI	AGCT	4 cut(s)	10, 187, 315, 326
AluI	AGCT	4 cut(s)	10, 187, 315, 326
Alw21I	GWGCWC	1 cut(s)	349
AoxI	GGCC	3 cut(s)	48, 396, 426
ApeKI	GCWGC	2 cut(s)	37, 300
AspS9I	GGNCC	2 cut(s)	262, 271
AsuHPI	GGTGA	1 cut(s)	73
AvaII	GGWCC	2 cut(s)	262, 271
BalI	TGGCCA	1 cut(s)	398
Bbv12I	GWGCWC	1 cut(s)	349
BbvI	GCAGC	2 cut(s)	24, 312
BceAI	ACGGC	3 cut(s)	35, 99, 413
BciT130I	CCWGG	1 cut(s)	333
BfmI	CTRYAG	1 cut(s)	241
BglII	AGATCT	1 cut(s)	276
BisI	GCNGC	2 cut(s)	38, 301
BlsI	GCNGC	2 cut(s)	39, 302
Bme1390I	CCNGG	1 cut(s)	333
Bme18I	GGWCC	2 cut(s)	262, 271
BmgT120I	GGNCC	2 cut(s)	262, 271
BmiI	GGNNCC	1 cut(s)	238
BmrFI	CCNGG	1 cut(s)	333
BmsI	GCATC	3 cut(s)	6, 389, 450
BplI	GAGNNNNNCTC	2 cut(s)	289, 321
Bpu10I	CCTNAGC	1 cut(s)	159
BpuEI	CTTGAG	1 cut(s)	437
BsaJI	CCNNGG	4 cut(s)	88, 192, 331, 332
BsaWI	WCCGGW	1 cut(s)	233
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse118I	RCCGGY	3 cut(s)	40, 152, 362
Bse3DI	GCAATG	2 cut(s)	147, 375
BseBI	CCWGG	1 cut(s)	333
BseDI	CCNNGG	4 cut(s)	88, 192, 331, 332
BseGI	GGATG	2 cut(s)	354, 478
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMI	GCAATG	2 cut(s)	147, 375
BseMII	CTCAG	2 cut(s)	320, 414
BseXI	GCAGC	2 cut(s)	24, 312
Bsh1236I	CGCG	1 cut(s)	351
BshFI	GGCC	3 cut(s)	50, 398, 428
BsiHKAI	GWGCWC	1 cut(s)	349
BsiSI	CCGG	4 cut(s)	41, 153, 234, 363
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmFI	GGGAC	1 cut(s)	232
BsmI	GAATGC	1 cut(s)	179
BsnI	GGCC	3 cut(s)	50, 398, 428
Bsp1286I	GDGCHC	1 cut(s)	349
Bsp143I	GATC	1 cut(s)	276
Bsp19I	CCATGG	1 cut(s)	192
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	3 cut(s)	50, 398, 428
BspCNI	CTCAG	2 cut(s)	319, 415
BspFNI	CGCG	1 cut(s)	351
BspHI	TCATGA	1 cut(s)	414
BspLI	GGNNCC	1 cut(s)	238
BspQI	GCTCTTC	1 cut(s)	305
BsrDI	GCAATG	2 cut(s)	147, 375
BsrFI	RCCGGY	3 cut(s)	40, 152, 362
BssAI	RCCGGY	3 cut(s)	40, 152, 362
BssECI	CCNNGG	4 cut(s)	88, 192, 331, 332
BssMI	GATC	1 cut(s)	276
BssT1I	CCWWGG	2 cut(s)	88, 192
Bst2UI	CCWGG	1 cut(s)	333
Bst4CI	ACNGT	4 cut(s)	85, 253, 344, 392
Bst6I	CTCTTC	1 cut(s)	305
BstC8I	GCNNGC	4 cut(s)	35, 42, 112, 349
BstDEI	CTNAG	4 cut(s)	159, 200, 306, 423
BstDSI	CCRYGG	1 cut(s)	192
BstF5I	GGATG	2 cut(s)	354, 478
BstFNI	CGCG	1 cut(s)	351
BstKTI	GATC	1 cut(s)	279
BstMBI	GATC	1 cut(s)	276
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 111, 372
BstNI	CCWGG	1 cut(s)	333
BstSCI	CCNGG	1 cut(s)	331
BstSFI	CTRYAG	1 cut(s)	241
BstUI	CGCG	1 cut(s)	351
BstV1I	GCAGC	2 cut(s)	24, 312
BstX2I	RGATCY	1 cut(s)	276
BstXI	CCANNNNNNTGG	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	276
BsuRI	GGCC	3 cut(s)	50, 398, 428
BtgI	CCRYGG	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	354, 478
Cac8I	GCNNGC	4 cut(s)	35, 42, 112, 349
CciI	TCATGA	1 cut(s)	414
Cfr10I	RCCGGY	3 cut(s)	40, 152, 362
Cfr13I	GGNCC	2 cut(s)	262, 271
CseI	GACGC	2 cut(s)	116, 340
Csp6I	GTAC	1 cut(s)	205
CspCI	CAANNNNNGTGG	2 cut(s)	130, 165
CviAII	CATG	3 cut(s)	193, 266, 415
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	4 cut(s)	159, 200, 306, 423
DpnI	GATC	1 cut(s)	278
DpnII	GATC	1 cut(s)	276
EaeI	YGGCCR	2 cut(s)	48, 396
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
EciI	GGCGGA	1 cut(s)	124
Eco130I	CCWWGG	2 cut(s)	88, 192
Eco47I	GGWCC	2 cut(s)	262, 271
EcoRII	CCWGG	1 cut(s)	331
EcoT14I	CCWWGG	2 cut(s)	88, 192
ErhI	CCWWGG	2 cut(s)	88, 192
FaeI	CATG	3 cut(s)	196, 269, 418
FaiI	YATR	5 cut(s)	194, 267, 385, 407, 416
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	3 cut(s)	192, 265, 414
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	2 cut(s)	38, 301
FokI	GGATG	1 cut(s)	341
Fsp4HI	GCNGC	2 cut(s)	38, 301
GluI	GCNGC	2 cut(s)	38, 301
HaeIII	GGCC	3 cut(s)	50, 398, 428
HapII	CCGG	4 cut(s)	41, 153, 234, 363
HgaI	GACGC	2 cut(s)	116, 340
Hin1II	CATG	3 cut(s)	196, 269, 418
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	5 cut(s)	73, 128, 227, 284, 448
HpaII	CCGG	4 cut(s)	41, 153, 234, 363
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	2 cut(s)	81, 100
Hpy188I	TCNGA	3 cut(s)	66, 309, 322
Hpy188III	TCNNGA	1 cut(s)	415
Hpy8I	GTNNAC	2 cut(s)	81, 100
Hpy99I	CGWCG	2 cut(s)	56, 110
HpyAV	CCTTC	1 cut(s)	209
HpyCH4III	ACNGT	4 cut(s)	85, 253, 344, 392
HpyCH4V	TGCA	4 cut(s)	177, 257, 380, 463
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 111, 372
HpyF3I	CTNAG	4 cut(s)	159, 200, 306, 423
Hsp92II	CATG	3 cut(s)	196, 269, 418
KroI	GCCGGC	1 cut(s)	40
KroNI	GCCGGC	1 cut(s)	42
Kzo9I	GATC	1 cut(s)	276
LguI	GCTCTTC	1 cut(s)	305
Lsp1109I	GCAGC	2 cut(s)	24, 312
LweI	GCATC	3 cut(s)	6, 389, 450
MaeIII	GTNAC	2 cut(s)	122, 338
MalI	GATC	1 cut(s)	278
MboI	GATC	1 cut(s)	276
MboII	GAAGA	1 cut(s)	322
MflI	RGATCY	1 cut(s)	276
MhlI	GDGCHC	1 cut(s)	349
MlsI	TGGCCA	1 cut(s)	398
MluNI	TGGCCA	1 cut(s)	398
MlyI	GAGTC	3 cut(s)	67, 137, 221
MmeI	TCCRAC	1 cut(s)	450
MnlI	CCTC	7 cut(s)	63, 142, 253, 262, 315, 411, 418
Mox20I	TGGCCA	1 cut(s)	398
MroNI	GCCGGC	1 cut(s)	40
MscI	TGGCCA	1 cut(s)	398
Msp20I	TGGCCA	1 cut(s)	398
MspI	CCGG	4 cut(s)	41, 153, 234, 363
MspR9I	CCNGG	1 cut(s)	333
Mva1269I	GAATGC	1 cut(s)	179
MvaI	CCWGG	1 cut(s)	333
MvnI	CGCG	1 cut(s)	351
MwoI	GCNNNNNNNGC	3 cut(s)	16, 111, 372
NaeI	GCCGGC	1 cut(s)	42
NcoI	CCATGG	1 cut(s)	192
NdeII	GATC	1 cut(s)	276
NgoMIV	GCCGGC	1 cut(s)	40
NlaIII	CATG	3 cut(s)	196, 269, 418
NlaIV	GGNNCC	1 cut(s)	238
NmuCI	GTSAC	1 cut(s)	338
PagI	TCATGA	1 cut(s)	414
PasI	CCCWGGG	1 cut(s)	332
PciSI	GCTCTTC	1 cut(s)	305
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PctI	GAATGC	1 cut(s)	179
PdiI	GCCGGC	1 cut(s)	42
PfeI	GAWTC	2 cut(s)	284, 448
PkrI	GCNGC	2 cut(s)	39, 302
PleI	GAGTC	3 cut(s)	67, 136, 221
PpsI	GAGTC	3 cut(s)	67, 136, 221
Psp6I	CCWGG	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	331
PspN4I	GGNNCC	1 cut(s)	238
PspPI	GGNCC	2 cut(s)	262, 271
PsuI	RGATCY	1 cut(s)	276
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
SapI	GCTCTTC	1 cut(s)	305
SatI	GCNGC	2 cut(s)	38, 301
Sau3AI	GATC	1 cut(s)	276
Sau96I	GGNCC	2 cut(s)	262, 271
SchI	GAGTC	3 cut(s)	67, 137, 221
ScrFI	CCNGG	1 cut(s)	333
SduI	GDGCHC	1 cut(s)	349
SetI	ASST	9 cut(s)	12, 99, 146, 165, 189, 206, 242, 317, 328
SfaNI	GCATC	3 cut(s)	6, 389, 450
SfcI	CTRYAG	1 cut(s)	241
SinI	GGWCC	2 cut(s)	262, 271
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
SsiI	CCGC	1 cut(s)	135
StyD4I	CCNGG	1 cut(s)	331
StyI	CCWWGG	2 cut(s)	88, 192
TaaI	ACNGT	4 cut(s)	85, 253, 344, 392
TfiI	GAWTC	2 cut(s)	284, 448
TseFI	GTSAC	1 cut(s)	338
TseI	GCWGC	2 cut(s)	37, 300
Tsp45I	GTSAC	1 cut(s)	338
TspDTI	ATGAA	1 cut(s)	403
TspGWI	ACGGA	1 cut(s)	66
VpaK11BI	GGWCC	2 cut(s)	262, 271
XmiI	GTMKAC	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.