Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006754

Physical Location & Seq

Genomic Coordinates Forward (+)

43216854 .. 43219931

Gene Structure 3078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G528000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCTTCAACACTCTCGTGCAGAGCCAAAGCCATACGCGCCCTATCCTCCCCCACCACAGTACGACGTCGTCTGCCCCTGGTGGGAGCATTCTGCGTGCTCAGCTTGGGCATCTCCAACCTCTTTCCTGCTCTTTCCTTGTCCGCGTTCAAAACGGGCTCTGCTCAGTCTCTCGCTCCTCTCTTGAGATCAAGGTTTGGTAGCCAAGCAGCGGCTGTTCACTCTGCGAAAATGGAAGGGACTAGCACCACTGTACCAAGTATTGTTGTTTATGTGACTGTGCCTAACAAAGAAGCAGGAAAGAAGTTAGCTGAAAGCTTGGTCAGAGAAAAACTTGCAGCATGTGTTAACCGAGTACCAGGCATTGAGTCCGTCTATCAGTGGAATGGAGAGGTCCAGACAGATTCCGAGGAACTTCTTATAATCAAGACTAGGCAATCCCTTTTTGAAGCTCTGACAGAGCATGTGAAGGCAAACCATCCATATGATGTTCCAGAAGTTATTGCGCTACCTATCAACGCAGGCAGTCTCCAGTACCTAGAATGGGTCAAAAACAGCACAAGGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0022607 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0051259 GO:0051260 GO:0065003 GO:0070206 GO:0070207 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CutA1

Protein Analysis

190

Amino Acids

20.36

Weight (kDa)

9.54

Isoelectric Point (pI)

50.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33740 AT2G33740
fragaria_vesca	FvH4_5g35790 FvH4_5g35790 FvH4_5g35790 FvH4_5g35790 FvH4_5g35790 FvH4_5g35790
malus_domestica	MD08G1193500.v1.1 MD15G1382000.v1.1
prunus_persica	Prupe.1G528000_v2.0.a1
pyrus_communis	pycom08g16660 pycom15g34200
rosa_chinensis	RchiOBHm_Chr7g0237451
rosa_laevigata	RLG00000001001
rosa_multiflora	Rmu_co7998444.1_g000001 Rmu_sc0002843.1_g000007 Rmu_sc0002923.1_g000014
rosa_roxburghii	Rroxscaffold_3G00224190
rosa_rugosa	Rorug07G0303700 Rorug07G0303700
rosa_samantha	Rh7AG460800 Rh7BG430600 Rh7CG478100 Rh7DG447500
rosa_wichuraiana	Rw7G038140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	422
AatII	GACGTC	1 cut(s)	70
AccII	CGCG	2 cut(s)	39, 146
AciI	CCGC	2 cut(s)	144, 212
AcyI	GRCGYC	1 cut(s)	67
AfaI	GTAC	4 cut(s)	63, 255, 357, 536
AfiI	CCNNNNNNNGG	3 cut(s)	83, 211, 544
AgsI	TTSAA	3 cut(s)	9, 151, 449
AjnI	CCWGG	2 cut(s)	78, 358
AleI	CACNNNNGTG	1 cut(s)	16
AluBI	AGCT	4 cut(s)	105, 311, 318, 452
AluI	AGCT	4 cut(s)	105, 311, 318, 452
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	2 cut(s)	174, 533
AlwNI	CAGNNNCTG	1 cut(s)	215
ApeKI	GCWGC	2 cut(s)	209, 338
AspLEI	GCGC	2 cut(s)	41, 508
AspS9I	GGNCC	1 cut(s)	394
AvaII	GGWCC	1 cut(s)	394
BaeI	ACNNNNGTAYC	2 cut(s)	237, 270
BanII	GRGCYC	1 cut(s)	161
BauI	CACGAG	1 cut(s)	16
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	2 cut(s)	221, 350
BccI	CCATC	1 cut(s)	486
BciT130I	CCWGG	2 cut(s)	80, 360
BcoDI	GTCTC	2 cut(s)	174, 533
BfaI	CTAG	3 cut(s)	243, 432, 539
BisI	GCNGC	3 cut(s)	210, 213, 339
BlpI	GCTNAGC	1 cut(s)	101
BlsI	GCNGC	3 cut(s)	211, 214, 340
Bme1390I	CCNGG	2 cut(s)	80, 360
Bme18I	GGWCC	1 cut(s)	394
BmgT120I	GGNCC	1 cut(s)	394
BmrFI	CCNGG	2 cut(s)	80, 360
BmsI	GCATC	1 cut(s)	120
BpmI	CTGGAG	1 cut(s)	515
Bpu1102I	GCTNAGC	1 cut(s)	101
BpuEI	CTTGAG	1 cut(s)	205
BsaHI	GRCGYC	1 cut(s)	67
BsaJI	CCNNGG	2 cut(s)	78, 408
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 211, 544
Bse1I	ACTGG	1 cut(s)	532
BseBI	CCWGG	2 cut(s)	80, 360
BseDI	CCNNGG	2 cut(s)	78, 408
BseGI	GGATG	1 cut(s)	478
BseLI	CCNNNNNNNGG	3 cut(s)	83, 211, 544
BseMII	CTCAG	2 cut(s)	115, 179
BseNI	ACTGG	1 cut(s)	532
BseRI	GAGGAG	1 cut(s)	168
BseXI	GCAGC	2 cut(s)	221, 350
BsgI	GTGCAG	1 cut(s)	40
Bsh1236I	CGCG	2 cut(s)	39, 146
BsiHKAI	GWGCWC	1 cut(s)	102
BslFI	GGGAC	1 cut(s)	253
BslI	CCNNNNNNNGG	3 cut(s)	83, 211, 544
BsmAI	GTCTC	2 cut(s)	174, 533
BsmFI	GGGAC	1 cut(s)	253
BsmI	GAATGC	1 cut(s)	89
Bsp1286I	GDGCHC	2 cut(s)	102, 161
Bsp143I	GATC	1 cut(s)	188
Bsp1720I	GCTNAGC	1 cut(s)	101
BspACI	CCGC	2 cut(s)	144, 212
BspCNI	CTCAG	2 cut(s)	114, 178
BspFNI	CGCG	2 cut(s)	39, 146
BsrI	ACTGG	1 cut(s)	532
BssECI	CCNNGG	2 cut(s)	78, 408
BssMI	GATC	1 cut(s)	188
BssNI	GRCGYC	1 cut(s)	67
BssSI	CACGAG	1 cut(s)	16
Bst2BI	CACGAG	1 cut(s)	16
Bst2UI	CCWGG	2 cut(s)	80, 360
Bst4CI	ACNGT	3 cut(s)	61, 253, 280
BstACI	GRCGYC	1 cut(s)	67
BstC8I	GCNNGC	2 cut(s)	98, 523
BstDEI	CTNAG	2 cut(s)	101, 165
BstF5I	GGATG	1 cut(s)	478
BstFNI	CGCG	2 cut(s)	39, 146
BstHHI	GCGC	2 cut(s)	41, 508
BstKTI	GATC	1 cut(s)	191
BstMAI	GTCTC	2 cut(s)	174, 533
BstMBI	GATC	1 cut(s)	188
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 102, 564
BstNI	CCWGG	2 cut(s)	80, 360
BstNSI	RCATGY	2 cut(s)	345, 467
BstSCI	CCNGG	2 cut(s)	78, 358
BstUI	CGCG	2 cut(s)	39, 146
BstV1I	GCAGC	2 cut(s)	221, 350
BtsCI	GGATG	1 cut(s)	478
BtsIMutI	CAGTG	2 cut(s)	249, 386
Cac8I	GCNNGC	2 cut(s)	98, 523
CaiI	CAGNNNCTG	1 cut(s)	215
CfoI	GCGC	2 cut(s)	41, 508
Cfr13I	GGNCC	1 cut(s)	394
Csp6I	GTAC	4 cut(s)	62, 254, 356, 535
CviAII	CATG	2 cut(s)	342, 464
CviQI	GTAC	4 cut(s)	62, 254, 356, 535
DdeI	CTNAG	2 cut(s)	101, 165
DpnI	GATC	1 cut(s)	190
DpnII	GATC	1 cut(s)	188
Eco24I	GRGCYC	1 cut(s)	161
Eco47I	GGWCC	1 cut(s)	394
EcoRII	CCWGG	2 cut(s)	78, 358
EcoT38I	GRGCYC	1 cut(s)	161
FaeI	CATG	2 cut(s)	345, 467
FaiI	YATR	7 cut(s)	35, 273, 343, 422, 465, 484, 486
FaqI	GGGAC	1 cut(s)	253
FatI	CATG	2 cut(s)	341, 463
FauNDI	CATATG	1 cut(s)	484
Fnu4HI	GCNGC	3 cut(s)	210, 213, 339
FokI	GGATG	1 cut(s)	465
FriOI	GRGCYC	1 cut(s)	161
Fsp4HI	GCNGC	3 cut(s)	210, 213, 339
FspBI	CTAG	3 cut(s)	243, 432, 539
GlaI	GCGC	2 cut(s)	40, 507
GluI	GCNGC	3 cut(s)	210, 213, 339
GsuI	CTGGAG	1 cut(s)	515
HhaI	GCGC	2 cut(s)	41, 508
Hin1I	GRCGYC	1 cut(s)	67
Hin1II	CATG	2 cut(s)	345, 467
Hin6I	GCGC	2 cut(s)	39, 506
HinP1I	GCGC	2 cut(s)	39, 506
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HindIII	AAGCTT	1 cut(s)	316
HinfI	GANTC	2 cut(s)	368, 404
HpaI	GTTAAC	1 cut(s)	349
Hpy166II	GTNNAC	2 cut(s)	220, 349
Hpy188I	TCNGA	3 cut(s)	326, 409, 456
Hpy188III	TCNNGA	4 cut(s)	184, 397, 427, 494
Hpy8I	GTNNAC	2 cut(s)	220, 349
Hpy99I	CGWCG	2 cut(s)	69, 72
HpyAV	CCTTC	2 cut(s)	230, 463
HpyCH4III	ACNGT	3 cut(s)	61, 253, 280
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	2 cut(s)	21, 338
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 102, 564
HpyF3I	CTNAG	2 cut(s)	101, 165
HpySE526I	ACGT	1 cut(s)	67
Hsp92I	GRCGYC	1 cut(s)	67
Hsp92II	CATG	2 cut(s)	345, 467
HspAI	GCGC	2 cut(s)	39, 506
KspAI	GTTAAC	1 cut(s)	349
Kzo9I	GATC	1 cut(s)	188
LmnI	GCTCC	2 cut(s)	86, 181
Lsp1109I	GCAGC	2 cut(s)	221, 350
LweI	GCATC	1 cut(s)	120
MaeI	CTAG	3 cut(s)	243, 432, 539
MaeII	ACGT	1 cut(s)	67
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	1 cut(s)	190
MboI	GATC	1 cut(s)	188
MhlI	GDGCHC	2 cut(s)	102, 161
MlyI	GAGTC	1 cut(s)	377
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	5 cut(s)	58, 131, 189, 385, 403
MseI	TTAA	1 cut(s)	348
MslI	CAYNNNNRTG	2 cut(s)	16, 483
MspA1I	CMGCKG	1 cut(s)	212
MspR9I	CCNGG	2 cut(s)	80, 360
Mva1269I	GAATGC	1 cut(s)	89
MvaI	CCWGG	2 cut(s)	80, 360
MvnI	CGCG	2 cut(s)	39, 146
MwoI	GCNNNNNNNGC	3 cut(s)	38, 102, 564
NdeI	CATATG	1 cut(s)	484
NdeII	GATC	1 cut(s)	188
NlaIII	CATG	2 cut(s)	345, 467
NmuCI	GTSAC	1 cut(s)	274
NspI	RCATGY	2 cut(s)	345, 467
OliI	CACNNNNGTG	1 cut(s)	16
PctI	GAATGC	1 cut(s)	89
PfeI	GAWTC	1 cut(s)	404
PflFI	GACNNNGTC	1 cut(s)	69
PkrI	GCNGC	3 cut(s)	211, 214, 340
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
PsiI	TTATAA	1 cut(s)	422
Psp6I	CCWGG	2 cut(s)	78, 358
PspGI	CCWGG	2 cut(s)	78, 358
PspPI	GGNCC	1 cut(s)	394
PstNI	CAGNNNCTG	1 cut(s)	215
PsyI	GACNNNGTC	1 cut(s)	69
RsaI	GTAC	4 cut(s)	63, 255, 357, 536
RsaNI	GTAC	4 cut(s)	62, 254, 356, 535
RseI	CAYNNNNRTG	2 cut(s)	16, 483
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	3 cut(s)	210, 213, 339
Sau3AI	GATC	1 cut(s)	188
Sau96I	GGNCC	1 cut(s)	394
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	2 cut(s)	80, 360
SduI	GDGCHC	2 cut(s)	102, 161
SfaNI	GCATC	1 cut(s)	120
SinI	GGWCC	1 cut(s)	394
SmiMI	CAYNNNNRTG	2 cut(s)	16, 483
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
SsiI	CCGC	2 cut(s)	144, 212
SspMI	CTAG	3 cut(s)	243, 432, 539
StyD4I	CCNGG	2 cut(s)	78, 358
TaaI	ACNGT	3 cut(s)	61, 253, 280
TaiI	ACGT	1 cut(s)	70
TauI	GCSGC	1 cut(s)	215
TfiI	GAWTC	1 cut(s)	404
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TscAI	CASTG	2 cut(s)	256, 386
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	2 cut(s)	209, 338
Tsp45I	GTSAC	1 cut(s)	274
TspGWI	ACGGA	1 cut(s)	361
TspRI	CASTG	2 cut(s)	256, 386
Tth111I	GACNNNGTC	1 cut(s)	69
VpaK11BI	GGWCC	1 cut(s)	394
XceI	RCATGY	2 cut(s)	345, 467
XspI	CTAG	3 cut(s)	243, 432, 539
ZraI	GACGTC	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.