Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7998444.1

Orthogroup ID

OG0006754

Physical Location & Seq

Genomic Coordinates Forward (+)

137 .. 520

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7998444.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

atggcttccactcccacactcttctgcagagccaaagcaatacttcccttctcctccacgctacgacgtcgtttgcctctcgtcggagcaatctgcgtactcggcctcggcctccccaatctcttctccgccgcctgcagaacccgctgcgctcagtctctcccttttgcccctctcttgagatcaaaattcagtagccaagcaaaggcaatggaagggactcaaggcagcagcactgtaccaagcattgttgtttatgtcactgtacccaacaaagaagtaggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0022607 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0051259 GO:0051260 GO:0065003 GO:0070206 GO:0070207 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CutA1

Protein Analysis

95

Amino Acids

10.05

Weight (kDa)

10.54

Isoelectric Point (pI)

66.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33740 AT2G33740
fragaria_vesca	FvH4_5g35790 FvH4_5g35790 FvH4_5g35790 FvH4_5g35790 FvH4_5g35790 FvH4_5g35790
malus_domestica	MD08G1193500.v1.1 MD15G1382000.v1.1
prunus_persica	Prupe.1G528000_v2.0.a1
pyrus_communis	pycom08g16660 pycom15g34200
rosa_chinensis	RchiOBHm_Chr7g0237451
rosa_laevigata	RLG00000001001
rosa_multiflora	Rmu_co7998444.1_g000001 Rmu_sc0002843.1_g000007 Rmu_sc0002923.1_g000014
rosa_roxburghii	Rroxscaffold_3G00224190
rosa_rugosa	Rorug07G0303700 Rorug07G0303700
rosa_samantha	Rh7AG460800 Rh7BG430600 Rh7CG478100 Rh7DG447500
rosa_wichuraiana	Rw7G038140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	70
AciI	CCGC	3 cut(s)	129, 132, 145
AcsI	RAATTY	1 cut(s)	188
AcyI	GRCGYC	1 cut(s)	67
AfaI	GTAC	3 cut(s)	99, 240, 267
AfiI	CCNNNNNNNGG	2 cut(s)	83, 205
Alw26I	GTCTC	1 cut(s)	162
AoxI	GGCC	2 cut(s)	103, 109
ApeKI	GCWGC	3 cut(s)	147, 228, 231
ApoI	RAATTY	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	152
BbvI	GCAGC	3 cut(s)	134, 240, 243
BcoDI	GTCTC	1 cut(s)	162
BfmI	CTRYAG	2 cut(s)	25, 136
BisI	GCNGC	4 cut(s)	132, 148, 229, 232
BlsI	GCNGC	4 cut(s)	133, 149, 230, 233
BpuEI	CTTGAG	2 cut(s)	199, 207
BsaHI	GRCGYC	1 cut(s)	67
BsaJI	CCNNGG	1 cut(s)	106
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 205
Bse3DI	GCAATG	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	106
BseLI	CCNNNNNNNGG	2 cut(s)	83, 205
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	1 cut(s)	167
BseRI	GAGGAG	1 cut(s)	43
BseXI	GCAGC	3 cut(s)	134, 240, 243
BshFI	GGCC	2 cut(s)	105, 111
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	2 cut(s)	83, 205
BsmAI	GTCTC	1 cut(s)	162
BsmFI	GGGAC	1 cut(s)	232
BsnI	GGCC	2 cut(s)	105, 111
Bsp143I	GATC	1 cut(s)	182
BspACI	CCGC	3 cut(s)	129, 132, 145
BspANI	GGCC	2 cut(s)	105, 111
BspCNI	CTCAG	1 cut(s)	166
BspMAI	CTGCAG	2 cut(s)	29, 140
BsrDI	GCAATG	1 cut(s)	216
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	1 cut(s)	182
BssNI	GRCGYC	1 cut(s)	67
Bst4CI	ACNGT	2 cut(s)	238, 265
Bst6I	CTCTTC	2 cut(s)	26, 128
BstACI	GRCGYC	1 cut(s)	67
BstC8I	GCNNGC	1 cut(s)	136
BstDEI	CTNAG	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	1 cut(s)	185
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	1 cut(s)	182
BstMWI	GCNNNNNNNGC	2 cut(s)	102, 144
BstSFI	CTRYAG	2 cut(s)	25, 136
BstV1I	GCAGC	3 cut(s)	134, 240, 243
BsuRI	GGCC	2 cut(s)	105, 111
BtsIMutI	CAGTG	2 cut(s)	234, 261
Cac8I	GCNNGC	1 cut(s)	136
CfoI	GCGC	1 cut(s)	152
Csp6I	GTAC	3 cut(s)	98, 239, 266
CviJI	RGCY	5 cut(s)	5, 32, 105, 111, 198
CviKI_1	RGCY	5 cut(s)	5, 32, 105, 111, 198
CviQI	GTAC	3 cut(s)	98, 239, 266
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	1 cut(s)	184
DpnII	GATC	1 cut(s)	182
Eam1104I	CTCTTC	2 cut(s)	26, 128
EarI	CTCTTC	2 cut(s)	26, 128
EciI	GGCGGA	1 cut(s)	118
FaiI	YATR	1 cut(s)	258
FalI	AAGNNNNNCTT	2 cut(s)	27, 59
FaqI	GGGAC	1 cut(s)	232
FauI	CCCGC	1 cut(s)	152
Fnu4HI	GCNGC	4 cut(s)	132, 148, 229, 232
Fsp4HI	GCNGC	4 cut(s)	132, 148, 229, 232
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	4 cut(s)	132, 148, 229, 232
HaeIII	GGCC	2 cut(s)	105, 111
HhaI	GCGC	1 cut(s)	152
Hin1I	GRCGYC	1 cut(s)	67
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HinfI	GANTC	1 cut(s)	220
Hpy188I	TCNGA	1 cut(s)	86
Hpy188III	TCNNGA	1 cut(s)	178
Hpy99I	CGWCG	3 cut(s)	69, 72, 86
HpyAV	CCTTC	2 cut(s)	58, 209
HpyCH4III	ACNGT	2 cut(s)	238, 265
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	2 cut(s)	27, 138
HpyF10VI	GCNNNNNNNGC	2 cut(s)	102, 144
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	1 cut(s)	67
Hsp92I	GRCGYC	1 cut(s)	67
HspAI	GCGC	1 cut(s)	150
Kzo9I	GATC	1 cut(s)	182
LmnI	GCTCC	1 cut(s)	86
LpnPI	CCDG	1 cut(s)	148
Lsp1109I	GCAGC	3 cut(s)	134, 240, 243
MaeII	ACGT	1 cut(s)	67
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	1 cut(s)	184
MboI	GATC	1 cut(s)	182
MboII	GAAGA	2 cut(s)	13, 115
MluCI	AATT	1 cut(s)	188
MlyI	GAGTC	1 cut(s)	214
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	5 cut(s)	64, 87, 116, 122, 183
MspA1I	CMGCKG	1 cut(s)	147
MwoI	GCNNNNNNNGC	2 cut(s)	102, 144
NdeII	GATC	1 cut(s)	182
NmeAIII	GCCGAG	2 cut(s)	81, 87
NmuCI	GTSAC	1 cut(s)	259
PkrI	GCNGC	4 cut(s)	133, 149, 230, 233
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
PstI	CTGCAG	2 cut(s)	29, 140
RsaI	GTAC	3 cut(s)	99, 240, 267
RsaNI	GTAC	3 cut(s)	98, 239, 266
SatI	GCNGC	4 cut(s)	132, 148, 229, 232
Sau3AI	GATC	1 cut(s)	182
SchI	GAGTC	1 cut(s)	214
SetI	ASST	2 cut(s)	70, 286
SfcI	CTRYAG	2 cut(s)	25, 136
SmlI	CTYRAG	2 cut(s)	178, 222
SmoI	CTYRAG	2 cut(s)	178, 222
Sse9I	AATT	1 cut(s)	188
SsiI	CCGC	3 cut(s)	129, 132, 145
TaaI	ACNGT	2 cut(s)	238, 265
TaiI	ACGT	1 cut(s)	70
TasI	AATT	1 cut(s)	188
TauI	GCSGC	1 cut(s)	134
TscAI	CASTG	2 cut(s)	241, 268
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	3 cut(s)	147, 228, 231
Tsp45I	GTSAC	1 cut(s)	259
TspRI	CASTG	2 cut(s)	241, 268
XapI	RAATTY	1 cut(s)	188
ZraI	GACGTC	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.