Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006754

Physical Location & Seq

Genomic Coordinates Forward (+)

33858884 .. 33861559

Gene Structure 2676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g34200.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCTTCTACACTCTTCTGCAGACCCAAAGCCCTCCGAACCATCTCCTCCTCCGCCACGTTACGACGCCGTCTTCCCCTGGTGGGAGCATTCTGCGTAGTCACCTTGGGCATCTACAACCTCCTTCCCACTCTCTCCTTCTCCGCCTTGAGAACCGGCGTTGCTCTCTCTCTCCCTTTTGCCCCTCTGTTGAGATCAAGGTTTGGCAGCCAATCAGCAGCCGTTCATTCTGTGAGGATGGAAGGGAGTAGCAGTGCCACTGTTCCAAGTATTGTTGTTTATGTGACTGTGCCGAGCAGAGAAGTAGGAAAGAAGTTGGCTGAAAGCTTAGTCAGAGAACAACTTGCAGCCTGTGTTAACCTAGTGCCAGGCATTGAGTCCGTCTATCAGTGGAAAGGAGAGGTCCAGACAGATTCTGAAGAACTTCTTATAATCAAGACAAGGCAATCCCTTTTTGAAGCTCTGACAGCGCATGTCAAGGCAAACCATCCATACGATGTTCCGGAAGTTATCGCCTTACCCATCAACGCAGGCAGTCTCCCGTACTTAGAATGGATCAAAAACAGCACAAGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0022607 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0051259 GO:0051260 GO:0065003 GO:0070206 GO:0070207 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CutA1

Protein Analysis

193

Amino Acids

20.89

Weight (kDa)

9.47

Isoelectric Point (pI)

53.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33740 AT2G33740
fragaria_vesca	FvH4_5g35790 FvH4_5g35790 FvH4_5g35790 FvH4_5g35790 FvH4_5g35790 FvH4_5g35790
malus_domestica	MD08G1193500.v1.1 MD15G1382000.v1.1
prunus_persica	Prupe.1G528000_v2.0.a1
pyrus_communis	pycom08g16660 pycom15g34200
rosa_chinensis	RchiOBHm_Chr7g0237451
rosa_laevigata	RLG00000001001
rosa_multiflora	Rmu_co7998444.1_g000001 Rmu_sc0002843.1_g000007 Rmu_sc0002923.1_g000014
rosa_roxburghii	Rroxscaffold_3G00224190
rosa_rugosa	Rorug07G0303700 Rorug07G0303700
rosa_samantha	Rh7AG460800 Rh7BG430600 Rh7CG478100 Rh7DG447500
rosa_wichuraiana	Rw7G038140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	431
AccIII	TCCGGA	1 cut(s)	502
AciI	CCGC	2 cut(s)	54, 144
AclWI	GGATC	1 cut(s)	563
AcuI	CTGAAG	1 cut(s)	438
AcyI	GRCGYC	1 cut(s)	67
AfaI	GTAC	1 cut(s)	545
AfiI	CCNNNNNNNGG	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	458
AjnI	CCWGG	2 cut(s)	78, 367
AluBI	AGCT	2 cut(s)	327, 461
AluI	AGCT	2 cut(s)	327, 461
Alw26I	GTCTC	1 cut(s)	542
AlwI	GGATC	1 cut(s)	563
AlwNI	CAGNNNCTG	1 cut(s)	416
Aor13HI	TCCGGA	1 cut(s)	502
ApeKI	GCWGC	3 cut(s)	207, 218, 347
Asp700I	GAANNNNTTC	1 cut(s)	423
AspLEI	GCGC	1 cut(s)	472
AspS9I	GGNCC	1 cut(s)	403
AsuHPI	GGTGA	1 cut(s)	94
AvaII	GGWCC	1 cut(s)	403
BbsI	GAAGAC	1 cut(s)	65
BbvI	GCAGC	3 cut(s)	219, 230, 359
BccI	CCATC	4 cut(s)	50, 232, 495, 530
BceAI	ACGGC	2 cut(s)	54, 206
BciT130I	CCWGG	2 cut(s)	80, 369
BcoDI	GTCTC	1 cut(s)	542
BfaI	CTAG	1 cut(s)	362
BfmI	CTRYAG	1 cut(s)	19
BisI	GCNGC	3 cut(s)	208, 219, 348
BlsI	GCNGC	3 cut(s)	209, 220, 349
Bme1390I	CCNGG	2 cut(s)	80, 369
Bme18I	GGWCC	1 cut(s)	403
BmgT120I	GGNCC	1 cut(s)	403
BmrFI	CCNGG	2 cut(s)	80, 369
BmsI	GCATC	1 cut(s)	120
BpiI	GAAGAC	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	169
BsaHI	GRCGYC	1 cut(s)	67
BsaJI	CCNNGG	2 cut(s)	78, 105
BsaWI	WCCGGW	1 cut(s)	502
BsaXI	ACNNNNNCTCC	2 cut(s)	238, 268
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse118I	RCCGGY	1 cut(s)	155
BseAI	TCCGGA	1 cut(s)	502
BseBI	CCWGG	2 cut(s)	80, 369
BseDI	CCNNGG	2 cut(s)	78, 105
BseGI	GGATG	2 cut(s)	243, 487
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseRI	GAGGAG	2 cut(s)	37, 40
BseXI	GCAGC	3 cut(s)	219, 230, 359
BsiSI	CCGG	2 cut(s)	156, 503
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	542
BsmI	GAATGC	1 cut(s)	89
Bsp13I	TCCGGA	1 cut(s)	502
Bsp143I	GATC	2 cut(s)	194, 555
BspACI	CCGC	2 cut(s)	54, 144
BspEI	TCCGGA	1 cut(s)	502
BspMAI	CTGCAG	1 cut(s)	23
BspPI	GGATC	1 cut(s)	563
BsrFI	RCCGGY	1 cut(s)	155
BssAI	RCCGGY	1 cut(s)	155
BssECI	CCNNGG	2 cut(s)	78, 105
BssMI	GATC	2 cut(s)	194, 555
BssNI	GRCGYC	1 cut(s)	67
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	2 cut(s)	80, 369
Bst4CI	ACNGT	2 cut(s)	262, 289
Bst6I	CTCTTC	1 cut(s)	20
BstACI	GRCGYC	1 cut(s)	67
BstC8I	GCNNGC	1 cut(s)	532
BstDEI	CTNAG	2 cut(s)	328, 547
BstF5I	GGATG	2 cut(s)	243, 487
BstHHI	GCGC	1 cut(s)	472
BstKTI	GATC	2 cut(s)	197, 558
BstMAI	GTCTC	1 cut(s)	542
BstMBI	GATC	2 cut(s)	194, 555
BstMWI	GCNNNNNNNGC	1 cut(s)	467
BstNI	CCWGG	2 cut(s)	80, 369
BstNSI	RCATGY	1 cut(s)	476
BstSCI	CCNGG	2 cut(s)	78, 367
BstSFI	CTRYAG	1 cut(s)	19
BstV1I	GCAGC	3 cut(s)	219, 230, 359
BstV2I	GAAGAC	1 cut(s)	65
BtsCI	GGATG	2 cut(s)	243, 487
BtsI	GCAGTG	1 cut(s)	259
BtsIMutI	CAGTG	3 cut(s)	258, 259, 395
Cac8I	GCNNGC	1 cut(s)	532
CaiI	CAGNNNCTG	1 cut(s)	416
CfoI	GCGC	1 cut(s)	472
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	403
CseI	GACGC	1 cut(s)	75
Csp6I	GTAC	1 cut(s)	544
CviAII	CATG	1 cut(s)	473
CviJI	RGCY	8 cut(s)	5, 32, 210, 221, 320, 327, 350, 461
CviKI_1	RGCY	8 cut(s)	5, 32, 210, 221, 320, 327, 350, 461
CviQI	GTAC	1 cut(s)	544
DdeI	CTNAG	2 cut(s)	328, 547
DpnI	GATC	2 cut(s)	196, 557
DpnII	GATC	2 cut(s)	194, 555
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
EciI	GGCGGA	2 cut(s)	43, 133
Eco130I	CCWWGG	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	403
Eco57I	CTGAAG	1 cut(s)	438
EcoRII	CCWGG	2 cut(s)	78, 367
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	1 cut(s)	476
FaiI	YATR	4 cut(s)	282, 431, 474, 493
FalI	AAGNNNNNCTT	2 cut(s)	411, 443
FatI	CATG	1 cut(s)	472
Fnu4HI	GCNGC	3 cut(s)	208, 219, 348
FokI	GGATG	2 cut(s)	250, 474
Fsp4HI	GCNGC	3 cut(s)	208, 219, 348
FspBI	CTAG	1 cut(s)	362
GlaI	GCGC	1 cut(s)	471
GluI	GCNGC	3 cut(s)	208, 219, 348
HapII	CCGG	2 cut(s)	156, 503
HgaI	GACGC	1 cut(s)	75
HhaI	GCGC	1 cut(s)	472
Hin1I	GRCGYC	1 cut(s)	67
Hin1II	CATG	1 cut(s)	476
Hin6I	GCGC	1 cut(s)	470
HinP1I	GCGC	1 cut(s)	470
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HindIII	AAGCTT	1 cut(s)	325
HinfI	GANTC	2 cut(s)	377, 413
HpaI	GTTAAC	1 cut(s)	358
HpaII	CCGG	2 cut(s)	156, 503
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188I	TCNGA	4 cut(s)	38, 335, 418, 465
Hpy188III	TCNNGA	3 cut(s)	406, 436, 503
Hpy8I	GTNNAC	1 cut(s)	358
Hpy99I	CGWCG	1 cut(s)	69
HpyAV	CCTTC	3 cut(s)	134, 148, 236
HpyCH4III	ACNGT	2 cut(s)	262, 289
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	2 cut(s)	21, 347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	467
HpyF3I	CTNAG	2 cut(s)	328, 547
HpySE526I	ACGT	1 cut(s)	59
Hsp92I	GRCGYC	1 cut(s)	67
Hsp92II	CATG	1 cut(s)	476
HspAI	GCGC	1 cut(s)	470
Kpn2I	TCCGGA	1 cut(s)	502
KspAI	GTTAAC	1 cut(s)	358
Kzo9I	GATC	2 cut(s)	194, 555
LmnI	GCTCC	1 cut(s)	86
LpnPI	CCDG	9 cut(s)	65, 92, 169, 354, 364, 381, 419, 516, 516
Lsp1109I	GCAGC	3 cut(s)	219, 230, 359
LweI	GCATC	1 cut(s)	120
MaeI	CTAG	1 cut(s)	362
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	3 cut(s)	60, 100, 283
MalI	GATC	2 cut(s)	196, 557
MboI	GATC	2 cut(s)	194, 555
MboII	GAAGA	3 cut(s)	7, 65, 431
MlyI	GAGTC	1 cut(s)	386
MnlI	CCTC	7 cut(s)	44, 58, 61, 131, 195, 228, 394
MroI	TCCGGA	1 cut(s)	502
MroXI	GAANNNNTTC	1 cut(s)	423
MseI	TTAA	1 cut(s)	357
MspI	CCGG	2 cut(s)	156, 503
MspR9I	CCNGG	2 cut(s)	80, 369
Mva1269I	GAATGC	1 cut(s)	89
MvaI	CCWGG	2 cut(s)	80, 369
MwoI	GCNNNNNNNGC	1 cut(s)	467
NdeII	GATC	2 cut(s)	194, 555
NlaIII	CATG	1 cut(s)	476
NmeAIII	GCCGAG	1 cut(s)	318
NmuCI	GTSAC	2 cut(s)	100, 283
NspI	RCATGY	1 cut(s)	476
PctI	GAATGC	1 cut(s)	89
PdmI	GAANNNNTTC	1 cut(s)	423
PfeI	GAWTC	1 cut(s)	413
PflFI	GACNNNGTC	1 cut(s)	69
PkrI	GCNGC	3 cut(s)	209, 220, 349
PleI	GAGTC	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	385
PsiI	TTATAA	1 cut(s)	431
Psp6I	CCWGG	2 cut(s)	78, 367
PspGI	CCWGG	2 cut(s)	78, 367
PspPI	GGNCC	1 cut(s)	403
PstI	CTGCAG	1 cut(s)	23
PstNI	CAGNNNCTG	1 cut(s)	416
PsyI	GACNNNGTC	1 cut(s)	69
RsaI	GTAC	1 cut(s)	545
RsaNI	GTAC	1 cut(s)	544
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	3 cut(s)	208, 219, 348
Sau3AI	GATC	2 cut(s)	194, 555
Sau96I	GGNCC	1 cut(s)	403
SchI	GAGTC	1 cut(s)	386
ScrFI	CCNGG	2 cut(s)	80, 369
SetI	ASST	8 cut(s)	62, 107, 123, 203, 329, 363, 405, 463
SfaNI	GCATC	1 cut(s)	120
SfcI	CTRYAG	1 cut(s)	19
SinI	GGWCC	1 cut(s)	403
SmlI	CTYRAG	1 cut(s)	148
SmoI	CTYRAG	1 cut(s)	148
SsiI	CCGC	2 cut(s)	54, 144
SspMI	CTAG	1 cut(s)	362
StyD4I	CCNGG	2 cut(s)	78, 367
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	2 cut(s)	262, 289
TaiI	ACGT	1 cut(s)	62
TfiI	GAWTC	1 cut(s)	413
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TscAI	CASTG	3 cut(s)	259, 265, 395
TseFI	GTSAC	2 cut(s)	100, 283
TseI	GCWGC	3 cut(s)	207, 218, 347
Tsp45I	GTSAC	2 cut(s)	100, 283
TspDTI	ATGAA	1 cut(s)	215
TspGWI	ACGGA	1 cut(s)	370
TspRI	CASTG	3 cut(s)	259, 265, 395
Tth111I	GACNNNGTC	1 cut(s)	69
VpaK11BI	GGWCC	1 cut(s)	403
XceI	RCATGY	1 cut(s)	476
XmnI	GAANNNNTTC	1 cut(s)	423
XspI	CTAG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.