Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006754

Physical Location & Seq

Genomic Coordinates Forward (+)

7329020 .. 7331868

Gene Structure 2849 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00224190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGCTTCCACTTCCACACTCTTCTGGAGAGCCAAAGCAATACTTCCCTTCTCCTCCACGCTACGACGTCGTTTGCCTCTCGTCGGAGCAATCTGCGTACTCGGCTTCGGCCTCCCCAATCTCTTCTCCGCCGCCTGCAGAACCCGCTGCGCTCAGTCTCTCCCTTTTGCCCCTCTCTTGAGATCAAAGTTTAGTAGCCAAGCAAAGGCAATGGAAGGGGCTCAAGGCAGCAGCACTGTACCAAGCATTGTTGTATATGTCACTGTACCCAACAAAGAAGTAGGAAAGAAGTTAGCTGAAAGCTTGGTCAGAGAAAAACTTGCAGCATGTGTTAACATAGTACCAGGCATTCTGTCCATCTATCAGTGGGAAGGTTCAGACAGATTCAGAGGAGCTTCTTATAATCAAGACCAGGCAATCCCTTTTGAAGCTCTAACAGAGCATGTCAAGACAAACCATCCATATGATGTCCCAGAAGTTATTGCCTTGCCCATCAATGCGGGCAGTCTCAGCTACTTAGAATGGATCAAGAACAGCACAAAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0022607 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0051259 GO:0051260 GO:0065003 GO:0070206 GO:0070207 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CutA1

Protein Analysis

182

Amino Acids

19.87

Weight (kDa)

9.41

Isoelectric Point (pI)

47.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CutA1	PF03091	83 - 178	5.6e-26	CutA1 divalent ion tolerance protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33740 AT2G33740
fragaria_vesca	FvH4_5g35790 FvH4_5g35790 FvH4_5g35790 FvH4_5g35790 FvH4_5g35790 FvH4_5g35790
malus_domestica	MD08G1193500.v1.1 MD15G1382000.v1.1
prunus_persica	Prupe.1G528000_v2.0.a1
pyrus_communis	pycom08g16660 pycom15g34200
rosa_chinensis	RchiOBHm_Chr7g0237451
rosa_laevigata	RLG00000001001
rosa_multiflora	Rmu_co7998444.1_g000001 Rmu_sc0002843.1_g000007 Rmu_sc0002923.1_g000014
rosa_roxburghii	Rroxscaffold_3G00224190
rosa_rugosa	Rorug07G0303700 Rorug07G0303700
rosa_samantha	Rh7AG460800 Rh7BG430600 Rh7CG478100 Rh7DG447500
rosa_wichuraiana	Rw7G038140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	402
AatII	GACGTC	1 cut(s)	70
AciI	CCGC	4 cut(s)	129, 132, 145, 500
AclWI	GGATC	1 cut(s)	533
AcyI	GRCGYC	1 cut(s)	67
AfaI	GTAC	4 cut(s)	99, 240, 267, 342
AfiI	CCNNNNNNNGG	2 cut(s)	83, 205
AgsI	TTSAA	1 cut(s)	428
AjnI	CCWGG	2 cut(s)	343, 411
AluBI	AGCT	5 cut(s)	296, 303, 395, 431, 513
AluI	AGCT	5 cut(s)	296, 303, 395, 431, 513
Alw26I	GTCTC	2 cut(s)	162, 512
AlwI	GGATC	1 cut(s)	533
AoxI	GGCC	1 cut(s)	109
ApeKI	GCWGC	4 cut(s)	147, 228, 231, 323
AspLEI	GCGC	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	223
BbvI	GCAGC	4 cut(s)	134, 240, 243, 335
BccI	CCATC	3 cut(s)	365, 465, 500
BciT130I	CCWGG	2 cut(s)	345, 413
BcoDI	GTCTC	2 cut(s)	162, 512
BfmI	CTRYAG	1 cut(s)	136
BisI	GCNGC	5 cut(s)	132, 148, 229, 232, 324
BlsI	GCNGC	5 cut(s)	133, 149, 230, 233, 325
Bme1390I	CCNGG	2 cut(s)	345, 413
BmrFI	CCNGG	2 cut(s)	345, 413
BpmI	CTGGAG	1 cut(s)	46
BpuEI	CTTGAG	2 cut(s)	199, 207
BsaHI	GRCGYC	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 205
Bse3DI	GCAATG	1 cut(s)	216
BseBI	CCWGG	2 cut(s)	345, 413
BseGI	GGATG	1 cut(s)	457
BseLI	CCNNNNNNNGG	2 cut(s)	83, 205
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	2 cut(s)	167, 523
BseRI	GAGGAG	2 cut(s)	43, 405
BseXI	GCAGC	4 cut(s)	134, 240, 243, 335
BshFI	GGCC	1 cut(s)	111
BslFI	GGGAC	1 cut(s)	455
BslI	CCNNNNNNNGG	2 cut(s)	83, 205
BsmAI	GTCTC	2 cut(s)	162, 512
BsmFI	GGGAC	1 cut(s)	455
BsmI	GAATGC	1 cut(s)	348
BsnI	GGCC	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	2 cut(s)	182, 525
BspACI	CCGC	4 cut(s)	129, 132, 145, 500
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	2 cut(s)	166, 522
BspMAI	CTGCAG	1 cut(s)	140
BspPI	GGATC	1 cut(s)	533
BsrDI	GCAATG	1 cut(s)	216
BssMI	GATC	2 cut(s)	182, 525
BssNI	GRCGYC	1 cut(s)	67
Bst2UI	CCWGG	2 cut(s)	345, 413
Bst4CI	ACNGT	2 cut(s)	238, 265
Bst6I	CTCTTC	2 cut(s)	26, 128
BstACI	GRCGYC	1 cut(s)	67
BstC8I	GCNNGC	2 cut(s)	136, 502
BstDEI	CTNAG	3 cut(s)	153, 509, 517
BstF5I	GGATG	1 cut(s)	457
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	2 cut(s)	185, 528
BstMAI	GTCTC	2 cut(s)	162, 512
BstMBI	GATC	2 cut(s)	182, 525
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 144, 510
BstNI	CCWGG	2 cut(s)	345, 413
BstNSI	RCATGY	2 cut(s)	330, 446
BstSCI	CCNGG	2 cut(s)	343, 411
BstSFI	CTRYAG	1 cut(s)	136
BstV1I	GCAGC	4 cut(s)	134, 240, 243, 335
BsuRI	GGCC	1 cut(s)	111
BtsCI	GGATG	1 cut(s)	457
BtsIMutI	CAGTG	3 cut(s)	234, 261, 371
Cac8I	GCNNGC	2 cut(s)	136, 502
CfoI	GCGC	1 cut(s)	152
Csp6I	GTAC	4 cut(s)	98, 239, 266, 341
CviAII	CATG	2 cut(s)	327, 443
CviQI	GTAC	4 cut(s)	98, 239, 266, 341
DdeI	CTNAG	3 cut(s)	153, 509, 517
DpnI	GATC	2 cut(s)	184, 527
DpnII	GATC	2 cut(s)	182, 525
Eam1104I	CTCTTC	2 cut(s)	26, 128
EarI	CTCTTC	2 cut(s)	26, 128
EciI	GGCGGA	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	223
EcoRII	CCWGG	2 cut(s)	343, 411
EcoT38I	GRGCYC	1 cut(s)	223
FaeI	CATG	2 cut(s)	330, 446
FaiI	YATR	8 cut(s)	256, 258, 328, 338, 402, 444, 463, 465
FalI	AAGNNNNNCTT	2 cut(s)	27, 59
FaqI	GGGAC	1 cut(s)	455
FatI	CATG	2 cut(s)	326, 442
FauI	CCCGC	2 cut(s)	152, 493
FauNDI	CATATG	1 cut(s)	463
Fnu4HI	GCNGC	5 cut(s)	132, 148, 229, 232, 324
FokI	GGATG	1 cut(s)	444
FriOI	GRGCYC	1 cut(s)	223
Fsp4HI	GCNGC	5 cut(s)	132, 148, 229, 232, 324
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	5 cut(s)	132, 148, 229, 232, 324
GsuI	CTGGAG	1 cut(s)	46
HaeIII	GGCC	1 cut(s)	111
HhaI	GCGC	1 cut(s)	152
Hin1I	GRCGYC	1 cut(s)	67
Hin1II	CATG	2 cut(s)	330, 446
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HindIII	AAGCTT	1 cut(s)	301
HinfI	GANTC	1 cut(s)	384
HpaI	GTTAAC	1 cut(s)	334
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	4 cut(s)	86, 311, 379, 389
Hpy188III	TCNNGA	5 cut(s)	25, 178, 407, 448, 529
Hpy8I	GTNNAC	1 cut(s)	334
Hpy99I	CGWCG	3 cut(s)	69, 72, 86
HpyAV	CCTTC	3 cut(s)	58, 209, 365
HpyCH4III	ACNGT	2 cut(s)	238, 265
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	2 cut(s)	138, 323
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 144, 510
HpyF3I	CTNAG	3 cut(s)	153, 509, 517
HpySE526I	ACGT	1 cut(s)	67
Hsp92I	GRCGYC	1 cut(s)	67
Hsp92II	CATG	2 cut(s)	330, 446
HspAI	GCGC	1 cut(s)	150
KspAI	GTTAAC	1 cut(s)	334
Kzo9I	GATC	2 cut(s)	182, 525
LmnI	GCTCC	2 cut(s)	86, 392
LpnPI	CCDG	7 cut(s)	10, 148, 330, 357, 398, 425, 486
Lsp1109I	GCAGC	4 cut(s)	134, 240, 243, 335
MaeII	ACGT	1 cut(s)	67
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	2 cut(s)	184, 527
MboI	GATC	2 cut(s)	182, 525
MboII	GAAGA	2 cut(s)	13, 115
MhlI	GDGCHC	1 cut(s)	223
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	5 cut(s)	64, 87, 122, 183, 383
MseI	TTAA	1 cut(s)	333
MslI	CAYNNNNRTG	1 cut(s)	462
MspA1I	CMGCKG	1 cut(s)	147
MspR9I	CCNGG	2 cut(s)	345, 413
Mva1269I	GAATGC	1 cut(s)	348
MvaI	CCWGG	2 cut(s)	345, 413
MwoI	GCNNNNNNNGC	3 cut(s)	102, 144, 510
NdeI	CATATG	1 cut(s)	463
NdeII	GATC	2 cut(s)	182, 525
NlaIII	CATG	2 cut(s)	330, 446
NmeAIII	GCCGAG	1 cut(s)	81
NmuCI	GTSAC	1 cut(s)	259
NspI	RCATGY	2 cut(s)	330, 446
PctI	GAATGC	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	384
PkrI	GCNGC	5 cut(s)	133, 149, 230, 233, 325
PsiI	TTATAA	1 cut(s)	402
Psp6I	CCWGG	2 cut(s)	343, 411
PspGI	CCWGG	2 cut(s)	343, 411
PstI	CTGCAG	1 cut(s)	140
RsaI	GTAC	4 cut(s)	99, 240, 267, 342
RsaNI	GTAC	4 cut(s)	98, 239, 266, 341
RseI	CAYNNNNRTG	1 cut(s)	462
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	5 cut(s)	132, 148, 229, 232, 324
Sau3AI	GATC	2 cut(s)	182, 525
ScrFI	CCNGG	2 cut(s)	345, 413
SduI	GDGCHC	1 cut(s)	223
SetI	ASST	7 cut(s)	70, 298, 305, 376, 397, 433, 515
SfcI	CTRYAG	1 cut(s)	136
SmiMI	CAYNNNNRTG	1 cut(s)	462
SmlI	CTYRAG	2 cut(s)	178, 222
SmoI	CTYRAG	2 cut(s)	178, 222
SsiI	CCGC	4 cut(s)	129, 132, 145, 500
StyD4I	CCNGG	2 cut(s)	343, 411
TaaI	ACNGT	2 cut(s)	238, 265
TaiI	ACGT	1 cut(s)	70
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	1 cut(s)	384
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TscAI	CASTG	3 cut(s)	241, 268, 371
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	4 cut(s)	147, 228, 231, 323
Tsp45I	GTSAC	1 cut(s)	259
TspRI	CASTG	3 cut(s)	241, 268, 371
XceI	RCATGY	2 cut(s)	330, 446
ZraI	GACGTC	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.