Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002923.1

Orthogroup ID

OG0006754

Physical Location & Seq

Genomic Coordinates Forward (+)

40073 .. 42582

Gene Structure 2510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002923.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atggcttccactcccacactcttctgcagagccaaagcaatacttcccttctcctccacgctacgacgtcgtttgcctctcgtcggagcaatctgcgtactcggcctcggcctccccaatctcttctccgccgcctgcagaacccgctgcgctcagtctctcccttttgcccctctcttgagatcaaaattcagtagccaagcaaaggcaatggaagggactcaaggcagcagcactgtaccaagcattgttgtttatgtcactgtacccaacaaagaagtaggaaagaagttagctgaaagcttggtcagagaaaaacttgcagcatgtgttaacatagtaccaggcattctgtccatctatcagtgggaaggtgaggttcagacagattcagaggagcttcttataatcaagaccaggcaatccctttttgaagctctaacagagcatgtcaagacaaaccatccatatgatgtcccagaagttattgccttgcccatcaatgcgggcagtctcagctacttagaatggatcaagaacagcacaaaggactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0022607 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0051259 GO:0051260 GO:0065003 GO:0070206 GO:0070207 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CutA1

Protein Analysis

184

Amino Acids

20.07

Weight (kDa)

9.02

Isoelectric Point (pI)

53.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33740 AT2G33740
fragaria_vesca	FvH4_5g35790 FvH4_5g35790 FvH4_5g35790 FvH4_5g35790 FvH4_5g35790 FvH4_5g35790
malus_domestica	MD08G1193500.v1.1 MD15G1382000.v1.1
prunus_persica	Prupe.1G528000_v2.0.a1
pyrus_communis	pycom08g16660 pycom15g34200
rosa_chinensis	RchiOBHm_Chr7g0237451
rosa_laevigata	RLG00000001001
rosa_multiflora	Rmu_co7998444.1_g000001 Rmu_sc0002843.1_g000007 Rmu_sc0002923.1_g000014
rosa_roxburghii	Rroxscaffold_3G00224190
rosa_rugosa	Rorug07G0303700 Rorug07G0303700
rosa_samantha	Rh7AG460800 Rh7BG430600 Rh7CG478100 Rh7DG447500
rosa_wichuraiana	Rw7G038140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	407
AatII	GACGTC	1 cut(s)	70
AciI	CCGC	4 cut(s)	129, 132, 145, 506
AclWI	GGATC	1 cut(s)	539
AcsI	RAATTY	1 cut(s)	188
AcyI	GRCGYC	1 cut(s)	67
AfaI	GTAC	4 cut(s)	99, 240, 267, 342
AfiI	CCNNNNNNNGG	2 cut(s)	83, 205
AgsI	TTSAA	1 cut(s)	434
AjnI	CCWGG	2 cut(s)	343, 416
AluBI	AGCT	5 cut(s)	296, 303, 400, 437, 519
AluI	AGCT	5 cut(s)	296, 303, 400, 437, 519
Alw26I	GTCTC	2 cut(s)	162, 518
AlwI	GGATC	1 cut(s)	539
AoxI	GGCC	2 cut(s)	103, 109
ApeKI	GCWGC	4 cut(s)	147, 228, 231, 323
ApoI	RAATTY	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	152
AsuHPI	GGTGA	1 cut(s)	386
BbvI	GCAGC	4 cut(s)	134, 240, 243, 335
BccI	CCATC	3 cut(s)	365, 471, 506
BciT130I	CCWGG	2 cut(s)	345, 418
BcoDI	GTCTC	2 cut(s)	162, 518
BfmI	CTRYAG	2 cut(s)	25, 136
BisI	GCNGC	5 cut(s)	132, 148, 229, 232, 324
BlsI	GCNGC	5 cut(s)	133, 149, 230, 233, 325
Bme1390I	CCNGG	2 cut(s)	345, 418
BmrFI	CCNGG	2 cut(s)	345, 418
BpuEI	CTTGAG	2 cut(s)	199, 207
BsaHI	GRCGYC	1 cut(s)	67
BsaJI	CCNNGG	1 cut(s)	106
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 205
Bse3DI	GCAATG	1 cut(s)	216
BseBI	CCWGG	2 cut(s)	345, 418
BseDI	CCNNGG	1 cut(s)	106
BseGI	GGATG	1 cut(s)	463
BseLI	CCNNNNNNNGG	2 cut(s)	83, 205
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	2 cut(s)	167, 529
BseRI	GAGGAG	2 cut(s)	43, 410
BseXI	GCAGC	4 cut(s)	134, 240, 243, 335
BshFI	GGCC	2 cut(s)	105, 111
BslFI	GGGAC	2 cut(s)	232, 461
BslI	CCNNNNNNNGG	2 cut(s)	83, 205
BsmAI	GTCTC	2 cut(s)	162, 518
BsmFI	GGGAC	2 cut(s)	232, 461
BsmI	GAATGC	1 cut(s)	348
BsnI	GGCC	2 cut(s)	105, 111
Bsp143I	GATC	2 cut(s)	182, 531
BspACI	CCGC	4 cut(s)	129, 132, 145, 506
BspANI	GGCC	2 cut(s)	105, 111
BspCNI	CTCAG	2 cut(s)	166, 528
BspMAI	CTGCAG	2 cut(s)	29, 140
BspPI	GGATC	1 cut(s)	539
BsrDI	GCAATG	1 cut(s)	216
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	2 cut(s)	182, 531
BssNI	GRCGYC	1 cut(s)	67
Bst2UI	CCWGG	2 cut(s)	345, 418
Bst4CI	ACNGT	2 cut(s)	238, 265
Bst6I	CTCTTC	2 cut(s)	26, 128
BstACI	GRCGYC	1 cut(s)	67
BstC8I	GCNNGC	2 cut(s)	136, 508
BstDEI	CTNAG	3 cut(s)	153, 515, 523
BstF5I	GGATG	1 cut(s)	463
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	2 cut(s)	185, 534
BstMAI	GTCTC	2 cut(s)	162, 518
BstMBI	GATC	2 cut(s)	182, 531
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 144, 516
BstNI	CCWGG	2 cut(s)	345, 418
BstNSI	RCATGY	2 cut(s)	330, 452
BstSCI	CCNGG	2 cut(s)	343, 416
BstSFI	CTRYAG	2 cut(s)	25, 136
BstV1I	GCAGC	4 cut(s)	134, 240, 243, 335
BsuRI	GGCC	2 cut(s)	105, 111
BtsCI	GGATG	1 cut(s)	463
BtsIMutI	CAGTG	3 cut(s)	234, 261, 371
Cac8I	GCNNGC	2 cut(s)	136, 508
CfoI	GCGC	1 cut(s)	152
Csp6I	GTAC	4 cut(s)	98, 239, 266, 341
CviAII	CATG	2 cut(s)	327, 449
CviQI	GTAC	4 cut(s)	98, 239, 266, 341
DdeI	CTNAG	3 cut(s)	153, 515, 523
DpnI	GATC	2 cut(s)	184, 533
DpnII	GATC	2 cut(s)	182, 531
Eam1104I	CTCTTC	2 cut(s)	26, 128
EarI	CTCTTC	2 cut(s)	26, 128
EciI	GGCGGA	1 cut(s)	118
EcoRII	CCWGG	2 cut(s)	343, 416
FaeI	CATG	2 cut(s)	330, 452
FaiI	YATR	7 cut(s)	258, 328, 338, 407, 450, 469, 471
FalI	AAGNNNNNCTT	2 cut(s)	27, 59
FaqI	GGGAC	2 cut(s)	232, 461
FatI	CATG	2 cut(s)	326, 448
FauI	CCCGC	2 cut(s)	152, 499
FauNDI	CATATG	1 cut(s)	469
Fnu4HI	GCNGC	5 cut(s)	132, 148, 229, 232, 324
FokI	GGATG	1 cut(s)	450
Fsp4HI	GCNGC	5 cut(s)	132, 148, 229, 232, 324
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	5 cut(s)	132, 148, 229, 232, 324
HaeIII	GGCC	2 cut(s)	105, 111
HhaI	GCGC	1 cut(s)	152
Hin1I	GRCGYC	1 cut(s)	67
Hin1II	CATG	2 cut(s)	330, 452
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HindIII	AAGCTT	1 cut(s)	301
HinfI	GANTC	2 cut(s)	220, 389
HpaI	GTTAAC	1 cut(s)	334
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	4 cut(s)	86, 311, 384, 394
Hpy188III	TCNNGA	4 cut(s)	178, 412, 454, 535
Hpy8I	GTNNAC	1 cut(s)	334
Hpy99I	CGWCG	3 cut(s)	69, 72, 86
HpyAV	CCTTC	3 cut(s)	58, 209, 365
HpyCH4III	ACNGT	2 cut(s)	238, 265
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	3 cut(s)	27, 138, 323
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 144, 516
HpyF3I	CTNAG	3 cut(s)	153, 515, 523
HpySE526I	ACGT	1 cut(s)	67
Hsp92I	GRCGYC	1 cut(s)	67
Hsp92II	CATG	2 cut(s)	330, 452
HspAI	GCGC	1 cut(s)	150
KspAI	GTTAAC	1 cut(s)	334
Kzo9I	GATC	2 cut(s)	182, 531
LmnI	GCTCC	2 cut(s)	86, 397
LpnPI	CCDG	6 cut(s)	148, 330, 357, 403, 430, 492
Lsp1109I	GCAGC	4 cut(s)	134, 240, 243, 335
MaeII	ACGT	1 cut(s)	67
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	2 cut(s)	184, 533
MboI	GATC	2 cut(s)	182, 531
MboII	GAAGA	2 cut(s)	13, 115
MluCI	AATT	1 cut(s)	188
MlyI	GAGTC	1 cut(s)	214
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	7 cut(s)	64, 87, 116, 122, 183, 370, 388
MseI	TTAA	1 cut(s)	333
MslI	CAYNNNNRTG	1 cut(s)	468
MspA1I	CMGCKG	1 cut(s)	147
MspR9I	CCNGG	2 cut(s)	345, 418
Mva1269I	GAATGC	1 cut(s)	348
MvaI	CCWGG	2 cut(s)	345, 418
MwoI	GCNNNNNNNGC	3 cut(s)	102, 144, 516
NdeI	CATATG	1 cut(s)	469
NdeII	GATC	2 cut(s)	182, 531
NlaIII	CATG	2 cut(s)	330, 452
NmeAIII	GCCGAG	2 cut(s)	81, 87
NmuCI	GTSAC	1 cut(s)	259
NspI	RCATGY	2 cut(s)	330, 452
PctI	GAATGC	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	389
PkrI	GCNGC	5 cut(s)	133, 149, 230, 233, 325
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
PsiI	TTATAA	1 cut(s)	407
Psp6I	CCWGG	2 cut(s)	343, 416
PspGI	CCWGG	2 cut(s)	343, 416
PstI	CTGCAG	2 cut(s)	29, 140
RsaI	GTAC	4 cut(s)	99, 240, 267, 342
RsaNI	GTAC	4 cut(s)	98, 239, 266, 341
RseI	CAYNNNNRTG	1 cut(s)	468
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	5 cut(s)	132, 148, 229, 232, 324
Sau3AI	GATC	2 cut(s)	182, 531
SchI	GAGTC	1 cut(s)	214
ScrFI	CCNGG	2 cut(s)	345, 418
SetI	ASST	8 cut(s)	70, 298, 305, 376, 381, 402, 439, 521
SfcI	CTRYAG	2 cut(s)	25, 136
SmiMI	CAYNNNNRTG	1 cut(s)	468
SmlI	CTYRAG	2 cut(s)	178, 222
SmoI	CTYRAG	2 cut(s)	178, 222
Sse9I	AATT	1 cut(s)	188
SsiI	CCGC	4 cut(s)	129, 132, 145, 506
StyD4I	CCNGG	2 cut(s)	343, 416
TaaI	ACNGT	2 cut(s)	238, 265
TaiI	ACGT	1 cut(s)	70
TasI	AATT	1 cut(s)	188
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	1 cut(s)	389
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TscAI	CASTG	3 cut(s)	241, 268, 371
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	4 cut(s)	147, 228, 231, 323
Tsp45I	GTSAC	1 cut(s)	259
TspRI	CASTG	3 cut(s)	241, 268, 371
XapI	RAATTY	1 cut(s)	188
XceI	RCATGY	2 cut(s)	330, 452
ZraI	GACGTC	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.