Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0006754

Physical Location & Seq

Genomic Coordinates Reverse (-)

49293342 .. 49296263

Gene Structure 2922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG430600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCTTCCACTTCCACACTCTTCTGCAGAGCCAAAGCAGTACTTCCCTTCTCCTCCACGCTACGACGTCGTTTGCCTCTCGTCGGAGCAATCTGCGTACTCGGCTTCGGCCTCCCCAATCTCTTCTCCGCCGCCTGCAGAACCCGCTGCGCTCAGTCTCTCCCTTTTGCCCCTCTCTTGAGATCAAAGTTTAGTAGCCAAGCAAAGGCAATGGAAGGGACTCAAGCCAGCAGCAGCAGCAGCACTGTACCAAGCATTGTTGTTTATGTCACTGTACCCAACAAAGAAGTAGGAAAGAAGTTAGCTGAAAGCTTGGTCAGAGAAAAACTTGCAGCATGTGTTAACATAGTACCAGGTATCAACTTCAGAGTATTTTCGTTTATGCTGGTGCAAGGGCTGCAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0022607 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0051259 GO:0051260 GO:0065003 GO:0070206 GO:0070207 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CutA1

Protein Analysis

135

Amino Acids

14.41

Weight (kDa)

10.45

Isoelectric Point (pI)

59.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CutA1	PF03091	86 - 120	5.9e-09	CutA1 divalent ion tolerance protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33740 AT2G33740
fragaria_vesca	FvH4_5g35790 FvH4_5g35790 FvH4_5g35790 FvH4_5g35790 FvH4_5g35790 FvH4_5g35790
malus_domestica	MD08G1193500.v1.1 MD15G1382000.v1.1
prunus_persica	Prupe.1G528000_v2.0.a1
pyrus_communis	pycom08g16660 pycom15g34200
rosa_chinensis	RchiOBHm_Chr7g0237451
rosa_laevigata	RLG00000001001
rosa_multiflora	Rmu_co7998444.1_g000001 Rmu_sc0002843.1_g000007 Rmu_sc0002923.1_g000014
rosa_roxburghii	Rroxscaffold_3G00224190
rosa_rugosa	Rorug07G0303700 Rorug07G0303700
rosa_samantha	Rh7AG460800 Rh7BG430600 Rh7CG478100 Rh7DG447500
rosa_wichuraiana	Rw7G038140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	70
AciI	CCGC	3 cut(s)	129, 132, 145
AcuI	CTGAAG	1 cut(s)	349
AcyI	GRCGYC	1 cut(s)	67
AfaI	GTAC	5 cut(s)	42, 99, 249, 276, 351
AfiI	CCNNNNNNNGG	2 cut(s)	83, 205
AjnI	CCWGG	1 cut(s)	352
AluBI	AGCT	3 cut(s)	305, 312, 404
AluI	AGCT	3 cut(s)	305, 312, 404
Alw26I	GTCTC	1 cut(s)	162
AoxI	GGCC	1 cut(s)	109
ApeKI	GCWGC	7 cut(s)	147, 231, 234, 237, 240, 332, 397
AspLEI	GCGC	1 cut(s)	152
BbvI	GCAGC	7 cut(s)	134, 243, 246, 249, 252, 344, 384
BciT130I	CCWGG	1 cut(s)	354
BcoDI	GTCTC	1 cut(s)	162
BfmI	CTRYAG	2 cut(s)	25, 136
BisI	GCNGC	8 cut(s)	132, 148, 232, 235, 238, 241, 333, 398
BlsI	GCNGC	8 cut(s)	133, 149, 233, 236, 239, 242, 334, 399
BmcAI	AGTACT	1 cut(s)	42
Bme1390I	CCNGG	1 cut(s)	354
BmrFI	CCNGG	1 cut(s)	354
BpuEI	CTTGAG	2 cut(s)	199, 207
BsaHI	GRCGYC	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 205
Bse3DI	GCAATG	1 cut(s)	216
BseBI	CCWGG	1 cut(s)	354
BseLI	CCNNNNNNNGG	2 cut(s)	83, 205
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	1 cut(s)	167
BseRI	GAGGAG	1 cut(s)	43
BseXI	GCAGC	7 cut(s)	134, 243, 246, 249, 252, 344, 384
BshFI	GGCC	1 cut(s)	111
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	2 cut(s)	83, 205
BsmAI	GTCTC	1 cut(s)	162
BsmFI	GGGAC	1 cut(s)	232
BsnI	GGCC	1 cut(s)	111
Bsp143I	GATC	1 cut(s)	182
BspACI	CCGC	3 cut(s)	129, 132, 145
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	1 cut(s)	166
BspMAI	CTGCAG	2 cut(s)	29, 140
BsrDI	GCAATG	1 cut(s)	216
BssMI	GATC	1 cut(s)	182
BssNI	GRCGYC	1 cut(s)	67
Bst2UI	CCWGG	1 cut(s)	354
Bst4CI	ACNGT	2 cut(s)	247, 274
Bst6I	CTCTTC	2 cut(s)	26, 128
BstACI	GRCGYC	1 cut(s)	67
BstAPI	GCANNNNNTGC	1 cut(s)	397
BstC8I	GCNNGC	3 cut(s)	136, 229, 402
BstDEI	CTNAG	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	1 cut(s)	185
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	1 cut(s)	182
BstMWI	GCNNNNNNNGC	5 cut(s)	102, 144, 237, 240, 397
BstNI	CCWGG	1 cut(s)	354
BstNSI	RCATGY	1 cut(s)	339
BstSCI	CCNGG	1 cut(s)	352
BstSFI	CTRYAG	2 cut(s)	25, 136
BstV1I	GCAGC	7 cut(s)	134, 243, 246, 249, 252, 344, 384
BsuRI	GGCC	1 cut(s)	111
BtsIMutI	CAGTG	2 cut(s)	243, 270
Cac8I	GCNNGC	3 cut(s)	136, 229, 402
CfoI	GCGC	1 cut(s)	152
CsiI	ACCWGGT	1 cut(s)	352
Csp6I	GTAC	5 cut(s)	41, 98, 248, 275, 350
CviAII	CATG	1 cut(s)	336
CviQI	GTAC	5 cut(s)	41, 98, 248, 275, 350
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	1 cut(s)	184
DpnII	GATC	1 cut(s)	182
Eam1104I	CTCTTC	2 cut(s)	26, 128
EarI	CTCTTC	2 cut(s)	26, 128
EciI	GGCGGA	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	349
EcoRII	CCWGG	1 cut(s)	352
FaeI	CATG	1 cut(s)	339
FaiI	YATR	4 cut(s)	267, 337, 347, 383
FalI	AAGNNNNNCTT	2 cut(s)	27, 59
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	1 cut(s)	335
FauI	CCCGC	1 cut(s)	152
Fnu4HI	GCNGC	8 cut(s)	132, 148, 232, 235, 238, 241, 333, 398
Fsp4HI	GCNGC	8 cut(s)	132, 148, 232, 235, 238, 241, 333, 398
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	8 cut(s)	132, 148, 232, 235, 238, 241, 333, 398
HaeIII	GGCC	1 cut(s)	111
HhaI	GCGC	1 cut(s)	152
Hin1I	GRCGYC	1 cut(s)	67
Hin1II	CATG	1 cut(s)	339
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HindIII	AAGCTT	2 cut(s)	310, 402
HinfI	GANTC	1 cut(s)	220
HpaI	GTTAAC	1 cut(s)	343
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	3 cut(s)	86, 320, 368
Hpy188III	TCNNGA	1 cut(s)	178
Hpy8I	GTNNAC	1 cut(s)	343
Hpy99I	CGWCG	3 cut(s)	69, 72, 86
HpyAV	CCTTC	2 cut(s)	58, 209
HpyCH4III	ACNGT	2 cut(s)	247, 274
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	5 cut(s)	27, 138, 332, 391, 400
HpyF10VI	GCNNNNNNNGC	5 cut(s)	102, 144, 237, 240, 397
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	1 cut(s)	67
Hsp92I	GRCGYC	1 cut(s)	67
Hsp92II	CATG	1 cut(s)	339
HspAI	GCGC	1 cut(s)	150
KspAI	GTTAAC	1 cut(s)	343
Kzo9I	GATC	1 cut(s)	182
LmnI	GCTCC	1 cut(s)	86
LpnPI	CCDG	5 cut(s)	148, 241, 339, 366, 371
Lsp1109I	GCAGC	7 cut(s)	134, 243, 246, 249, 252, 344, 384
MabI	ACCWGGT	1 cut(s)	352
MaeII	ACGT	1 cut(s)	67
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	1 cut(s)	184
MboI	GATC	1 cut(s)	182
MboII	GAAGA	2 cut(s)	13, 115
MlyI	GAGTC	1 cut(s)	214
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	4 cut(s)	64, 87, 122, 183
MseI	TTAA	2 cut(s)	342, 406
MspA1I	CMGCKG	1 cut(s)	147
MspR9I	CCNGG	1 cut(s)	354
MvaI	CCWGG	1 cut(s)	354
MwoI	GCNNNNNNNGC	5 cut(s)	102, 144, 237, 240, 397
NdeII	GATC	1 cut(s)	182
NlaIII	CATG	1 cut(s)	339
NmeAIII	GCCGAG	1 cut(s)	81
NmuCI	GTSAC	1 cut(s)	268
NspI	RCATGY	1 cut(s)	339
PkrI	GCNGC	8 cut(s)	133, 149, 233, 236, 239, 242, 334, 399
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
Psp6I	CCWGG	1 cut(s)	352
PspGI	CCWGG	1 cut(s)	352
PstI	CTGCAG	2 cut(s)	29, 140
RsaI	GTAC	5 cut(s)	42, 99, 249, 276, 351
RsaNI	GTAC	5 cut(s)	41, 98, 248, 275, 350
SaqAI	TTAA	2 cut(s)	342, 406
SatI	GCNGC	8 cut(s)	132, 148, 232, 235, 238, 241, 333, 398
Sau3AI	GATC	1 cut(s)	182
ScaI	AGTACT	1 cut(s)	42
SchI	GAGTC	1 cut(s)	214
ScrFI	CCNGG	1 cut(s)	354
SetI	ASST	5 cut(s)	70, 307, 314, 358, 406
SexAI	ACCWGGT	1 cut(s)	352
SfcI	CTRYAG	2 cut(s)	25, 136
SmlI	CTYRAG	2 cut(s)	178, 222
SmoI	CTYRAG	2 cut(s)	178, 222
SsiI	CCGC	3 cut(s)	129, 132, 145
StyD4I	CCNGG	1 cut(s)	352
TaaI	ACNGT	2 cut(s)	247, 274
TaiI	ACGT	1 cut(s)	70
TatI	WGTACW	1 cut(s)	40
TauI	GCSGC	1 cut(s)	134
Tru1I	TTAA	2 cut(s)	342, 406
Tru9I	TTAA	2 cut(s)	342, 406
TscAI	CASTG	2 cut(s)	250, 277
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	7 cut(s)	147, 231, 234, 237, 240, 332, 397
Tsp45I	GTSAC	1 cut(s)	268
TspRI	CASTG	2 cut(s)	250, 277
XceI	RCATGY	1 cut(s)	339
ZraI	GACGTC	1 cut(s)	68
ZrmI	AGTACT	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.