Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0006754

Physical Location & Seq

Genomic Coordinates Reverse (-)

63467079 .. 63469607

Gene Structure 2529 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG447500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCTTCCACTTCCACACTCTTCTGCAGAGCCAAAGCAATACTTCCCTTCTCCTCCACGCTACGACGTCGTTTGCCTCTCGTCGGAGCAATCTGCGTACTCGGCTTCGGCCTCCCCAATCTCTTCTCCGCCGCCTGCAGAACCCGCTGCGCTCAGTCTCTCCCTTTTGCCCCTCTCTTAAGATCAAAATTCAGTAGCCAAGCAAAGGCAATGGAAGGGACTCAAGGCAGCAGCAGCAGCACTGTACCAAGCATTGTTGTTTATGTCACTGTACCCAACAAAGAAGTAGGAAAGAAGTTAGCTGAAAGCTTGGTCAGAGAAAAACTTGCAGCATGTGTTAACATAGTACCAGGCATTCAGTCCATCTATCAGTGGGAAGGTGAGGTTCAGACAGATTCAGAGGAGCTTCTTATAATCAAGACCAGGCAATCCCTTTTTGAAGCTCTAACAGAGCATGTCAAGACAAACCATCCATATGATGTCCCAGAAGTTATTGCTTTGCCCATCAACGCGGGCAGTCTCAGCTACTTAGAATGGATCAAGAACAGCACAAAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0022607 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0051259 GO:0051260 GO:0065003 GO:0070206 GO:0070207 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CutA1

Protein Analysis

186

Amino Acids

20.29

Weight (kDa)

9.02

Isoelectric Point (pI)

56.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CutA1	PF03091	85 - 182	2.8e-39	CutA1 divalent ion tolerance protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006754)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33740 AT2G33740
fragaria_vesca	FvH4_5g35790 FvH4_5g35790 FvH4_5g35790 FvH4_5g35790 FvH4_5g35790 FvH4_5g35790
malus_domestica	MD08G1193500.v1.1 MD15G1382000.v1.1
prunus_persica	Prupe.1G528000_v2.0.a1
pyrus_communis	pycom08g16660 pycom15g34200
rosa_chinensis	RchiOBHm_Chr7g0237451
rosa_laevigata	RLG00000001001
rosa_multiflora	Rmu_co7998444.1_g000001 Rmu_sc0002843.1_g000007 Rmu_sc0002923.1_g000014
rosa_roxburghii	Rroxscaffold_3G00224190
rosa_rugosa	Rorug07G0303700 Rorug07G0303700
rosa_samantha	Rh7AG460800 Rh7BG430600 Rh7CG478100 Rh7DG447500
rosa_wichuraiana	Rw7G038140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	413
AatII	GACGTC	1 cut(s)	70
AccII	CGCG	1 cut(s)	512
AciI	CCGC	4 cut(s)	129, 132, 145, 512
AclWI	GGATC	1 cut(s)	545
AcsI	RAATTY	1 cut(s)	188
AcyI	GRCGYC	1 cut(s)	67
AfaI	GTAC	4 cut(s)	99, 246, 273, 348
AfiI	CCNNNNNNNGG	2 cut(s)	83, 205
AflII	CTTAAG	1 cut(s)	178
AgsI	TTSAA	1 cut(s)	440
AjnI	CCWGG	2 cut(s)	349, 422
AluBI	AGCT	5 cut(s)	302, 309, 406, 443, 525
AluI	AGCT	5 cut(s)	302, 309, 406, 443, 525
Alw26I	GTCTC	2 cut(s)	162, 524
AlwI	GGATC	1 cut(s)	545
AoxI	GGCC	1 cut(s)	109
ApeKI	GCWGC	6 cut(s)	147, 228, 231, 234, 237, 329
ApoI	RAATTY	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	152
AsuHPI	GGTGA	1 cut(s)	392
BbvI	GCAGC	6 cut(s)	134, 240, 243, 246, 249, 341
BccI	CCATC	3 cut(s)	371, 477, 512
BciT130I	CCWGG	2 cut(s)	351, 424
BcoDI	GTCTC	2 cut(s)	162, 524
BfmI	CTRYAG	2 cut(s)	25, 136
BfrI	CTTAAG	1 cut(s)	178
BisI	GCNGC	7 cut(s)	132, 148, 229, 232, 235, 238, 330
BlsI	GCNGC	7 cut(s)	133, 149, 230, 233, 236, 239, 331
Bme1390I	CCNGG	2 cut(s)	351, 424
BmrFI	CCNGG	2 cut(s)	351, 424
BpuEI	CTTGAG	1 cut(s)	207
BsaHI	GRCGYC	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 205
Bse3DI	GCAATG	1 cut(s)	216
BseBI	CCWGG	2 cut(s)	351, 424
BseGI	GGATG	1 cut(s)	469
BseLI	CCNNNNNNNGG	2 cut(s)	83, 205
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	2 cut(s)	167, 535
BseRI	GAGGAG	2 cut(s)	43, 416
BseXI	GCAGC	6 cut(s)	134, 240, 243, 246, 249, 341
Bsh1236I	CGCG	1 cut(s)	512
BshFI	GGCC	1 cut(s)	111
BslFI	GGGAC	2 cut(s)	232, 467
BslI	CCNNNNNNNGG	2 cut(s)	83, 205
BsmAI	GTCTC	2 cut(s)	162, 524
BsmFI	GGGAC	2 cut(s)	232, 467
BsmI	GAATGC	1 cut(s)	354
BsnI	GGCC	1 cut(s)	111
Bsp143I	GATC	2 cut(s)	182, 537
BspACI	CCGC	4 cut(s)	129, 132, 145, 512
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	2 cut(s)	166, 534
BspFNI	CGCG	1 cut(s)	512
BspMAI	CTGCAG	2 cut(s)	29, 140
BspPI	GGATC	1 cut(s)	545
BspTI	CTTAAG	1 cut(s)	178
BsrDI	GCAATG	1 cut(s)	216
BssMI	GATC	2 cut(s)	182, 537
BssNI	GRCGYC	1 cut(s)	67
Bst2UI	CCWGG	2 cut(s)	351, 424
Bst4CI	ACNGT	2 cut(s)	244, 271
Bst6I	CTCTTC	2 cut(s)	26, 128
BstACI	GRCGYC	1 cut(s)	67
BstAFI	CTTAAG	1 cut(s)	178
BstC8I	GCNNGC	2 cut(s)	136, 514
BstDEI	CTNAG	3 cut(s)	153, 521, 529
BstF5I	GGATG	1 cut(s)	469
BstFNI	CGCG	1 cut(s)	512
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	2 cut(s)	185, 540
BstMAI	GTCTC	2 cut(s)	162, 524
BstMBI	GATC	2 cut(s)	182, 537
BstMWI	GCNNNNNNNGC	5 cut(s)	102, 144, 234, 237, 522
BstNI	CCWGG	2 cut(s)	351, 424
BstNSI	RCATGY	2 cut(s)	336, 458
BstSCI	CCNGG	2 cut(s)	349, 422
BstSFI	CTRYAG	2 cut(s)	25, 136
BstUI	CGCG	1 cut(s)	512
BstV1I	GCAGC	6 cut(s)	134, 240, 243, 246, 249, 341
BsuRI	GGCC	1 cut(s)	111
BtsCI	GGATG	1 cut(s)	469
BtsIMutI	CAGTG	3 cut(s)	240, 267, 377
Cac8I	GCNNGC	2 cut(s)	136, 514
CfoI	GCGC	1 cut(s)	152
Csp6I	GTAC	4 cut(s)	98, 245, 272, 347
CviAII	CATG	2 cut(s)	333, 455
CviQI	GTAC	4 cut(s)	98, 245, 272, 347
DdeI	CTNAG	3 cut(s)	153, 521, 529
DpnI	GATC	2 cut(s)	184, 539
DpnII	GATC	2 cut(s)	182, 537
Eam1104I	CTCTTC	2 cut(s)	26, 128
EarI	CTCTTC	2 cut(s)	26, 128
EciI	GGCGGA	1 cut(s)	118
EcoRII	CCWGG	2 cut(s)	349, 422
FaeI	CATG	2 cut(s)	336, 458
FaiI	YATR	7 cut(s)	264, 334, 344, 413, 456, 475, 477
FalI	AAGNNNNNCTT	2 cut(s)	27, 59
FaqI	GGGAC	2 cut(s)	232, 467
FatI	CATG	2 cut(s)	332, 454
FauI	CCCGC	2 cut(s)	152, 505
FauNDI	CATATG	1 cut(s)	475
Fnu4HI	GCNGC	7 cut(s)	132, 148, 229, 232, 235, 238, 330
FokI	GGATG	1 cut(s)	456
Fsp4HI	GCNGC	7 cut(s)	132, 148, 229, 232, 235, 238, 330
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	7 cut(s)	132, 148, 229, 232, 235, 238, 330
HaeIII	GGCC	1 cut(s)	111
HhaI	GCGC	1 cut(s)	152
Hin1I	GRCGYC	1 cut(s)	67
Hin1II	CATG	2 cut(s)	336, 458
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HindIII	AAGCTT	1 cut(s)	307
HinfI	GANTC	2 cut(s)	220, 395
HpaI	GTTAAC	1 cut(s)	340
HphI	GGTGA	1 cut(s)	392
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	4 cut(s)	86, 317, 390, 400
Hpy188III	TCNNGA	3 cut(s)	418, 460, 541
Hpy8I	GTNNAC	1 cut(s)	340
Hpy99I	CGWCG	3 cut(s)	69, 72, 86
HpyAV	CCTTC	3 cut(s)	58, 209, 371
HpyCH4III	ACNGT	2 cut(s)	244, 271
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	3 cut(s)	27, 138, 329
HpyF10VI	GCNNNNNNNGC	5 cut(s)	102, 144, 234, 237, 522
HpyF3I	CTNAG	3 cut(s)	153, 521, 529
HpySE526I	ACGT	1 cut(s)	67
Hsp92I	GRCGYC	1 cut(s)	67
Hsp92II	CATG	2 cut(s)	336, 458
HspAI	GCGC	1 cut(s)	150
KspAI	GTTAAC	1 cut(s)	340
Kzo9I	GATC	2 cut(s)	182, 537
LmnI	GCTCC	2 cut(s)	86, 403
LpnPI	CCDG	6 cut(s)	148, 336, 363, 409, 436, 498
Lsp1109I	GCAGC	6 cut(s)	134, 240, 243, 246, 249, 341
MaeII	ACGT	1 cut(s)	67
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	2 cut(s)	184, 539
MboI	GATC	2 cut(s)	182, 537
MboII	GAAGA	2 cut(s)	13, 115
MluCI	AATT	1 cut(s)	188
MlyI	GAGTC	1 cut(s)	214
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	6 cut(s)	64, 87, 122, 183, 376, 394
MseI	TTAA	2 cut(s)	179, 339
MslI	CAYNNNNRTG	1 cut(s)	474
MspA1I	CMGCKG	1 cut(s)	147
MspCI	CTTAAG	1 cut(s)	178
MspR9I	CCNGG	2 cut(s)	351, 424
Mva1269I	GAATGC	1 cut(s)	354
MvaI	CCWGG	2 cut(s)	351, 424
MvnI	CGCG	1 cut(s)	512
MwoI	GCNNNNNNNGC	5 cut(s)	102, 144, 234, 237, 522
NdeI	CATATG	1 cut(s)	475
NdeII	GATC	2 cut(s)	182, 537
NlaIII	CATG	2 cut(s)	336, 458
NmeAIII	GCCGAG	1 cut(s)	81
NmuCI	GTSAC	1 cut(s)	265
NspI	RCATGY	2 cut(s)	336, 458
PctI	GAATGC	1 cut(s)	354
PfeI	GAWTC	1 cut(s)	395
PkrI	GCNGC	7 cut(s)	133, 149, 230, 233, 236, 239, 331
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
PsiI	TTATAA	1 cut(s)	413
Psp6I	CCWGG	2 cut(s)	349, 422
PspGI	CCWGG	2 cut(s)	349, 422
PstI	CTGCAG	2 cut(s)	29, 140
RsaI	GTAC	4 cut(s)	99, 246, 273, 348
RsaNI	GTAC	4 cut(s)	98, 245, 272, 347
RseI	CAYNNNNRTG	1 cut(s)	474
SaqAI	TTAA	2 cut(s)	179, 339
SatI	GCNGC	7 cut(s)	132, 148, 229, 232, 235, 238, 330
Sau3AI	GATC	2 cut(s)	182, 537
SchI	GAGTC	1 cut(s)	214
ScrFI	CCNGG	2 cut(s)	351, 424
SetI	ASST	8 cut(s)	70, 304, 311, 382, 387, 408, 445, 527
SfcI	CTRYAG	2 cut(s)	25, 136
SmiMI	CAYNNNNRTG	1 cut(s)	474
SmlI	CTYRAG	2 cut(s)	178, 222
SmoI	CTYRAG	2 cut(s)	178, 222
Sse9I	AATT	1 cut(s)	188
SsiI	CCGC	4 cut(s)	129, 132, 145, 512
StyD4I	CCNGG	2 cut(s)	349, 422
TaaI	ACNGT	2 cut(s)	244, 271
TaiI	ACGT	1 cut(s)	70
TasI	AATT	1 cut(s)	188
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	1 cut(s)	395
Tru1I	TTAA	2 cut(s)	179, 339
Tru9I	TTAA	2 cut(s)	179, 339
TscAI	CASTG	3 cut(s)	247, 274, 377
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	6 cut(s)	147, 228, 231, 234, 237, 329
Tsp45I	GTSAC	1 cut(s)	265
TspRI	CASTG	3 cut(s)	247, 274, 377
Vha464I	CTTAAG	1 cut(s)	178
XapI	RAATTY	1 cut(s)	188
XceI	RCATGY	2 cut(s)	336, 458
ZraI	GACGTC	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.