Prupe.2G065600_v2.0.a1

Belongs to the small heat shock protein (HSP20) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0013354
Physical Location & Seq
Reverse (-)
9010591 .. 9013440
2850 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G065600.2

Sequence Viewer

Length: 1317 bp
ATGGCAATGAGGCAACGTTTTGGTGGAATCTCTAGTACCCGTCCAAGACTATCGTCTCGTTCAATTTATGAAGAGTTCAAGCCCCACTTTGAATTGAAGGAAGAGCAGGAAGCTCACGTTATACATGTTCATCTGCCTGGTTTTGTGAAGGAGCAAGTAAGGATTACATTTGCGGCTTCCCCTGGTGTAATTAAGGTTGATGGACAACGGCCTCTTGGGAATAACAAATGGAGCCGTTTCAACCAAACCTTCCCTATTCAAGAAAATTGCGACGTGAGTAAAATTCATGGCAAATTCAACAATCAAATTCTTACCATTACAATACCAAAGCTAGGCATCACTCAAGTAGGCCCTAAAGAAGCAGCCAAACCAAGCCAACAAGCACCACCTACCTCTTCAAAAACTCCAACTGCTTCTGCTGCTGAGGCAAAGCCACCGAAACTGCCAGAGGACCTAATTCCGTCAAAACCTGGTTTGACAGCAACTGCAGGCCCTCAGAAAATTAGCTCTTCTGAGCCAAAGGCACAAAAGGGTCAGGAAGTCATTTCACAAGCAGCTACCTCTGCTGCTCAAGATGAAAAGCAAAGGGATAAGAGAAGTGCTCCTCCAGCTGCAGGCCCCCAGGAAGCTGCTGCTGAGCCAAAGGCACAAAACTCTACTTTTAGTGCCAGAGATGAAAAAGAAAGGGATGACAAGAATGGTGGTCATCCATTAGGCCTTCCGAAAAGCGTTGCTGAGACAAAAGTACACAAGGATAAGGATGAGGCTCTTCCAAAAGCAATTTCAGCAATCCAGAATGAGAAACAAAGGGATGAGAAGAGGGTGATACCTTTGACTAGTCCTGAAGGAGGCATAAGTGAACCTAAGTCACAAAGGGGTAAGGATGAAATTCCTCCAAAAATAATTGACGAAAAGAGCTTGGAGTTTACTGCTGAGCATGTTGATCCAAAGGGTCAGAGTGGGAAGCCTGCAGAACCAAAGAATGCTGAGAGAGTTGCTGAAACCAGTCTGCAGAAGGAAAGAGAGGCCAATGAGAGAAGCAAAGAAGCAGGGGCTGTCCCAAAGATTTTAGAAAAGGCAAAGAGAAAGAGCAAGAGTTCTGGGAGCGCTGTTGACCGAGAGAAGCATACAGAGGAGGATTCCATTGCTGCAAATGTGATGGCTGCTGCAAAGGAGGGCATGAGAAATCTAGGAGAGGGGGTGAATGATGAAGAGAAGCAGATGTTGATCAATATGGGAGCAGCTGTTCTTGTTCTTCTGGCACTTGGGGCTTCTGCTTCCTACAGCTTATGGTCCTCTGGAAAAACCATGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HSP20

Protein Analysis

439

Amino Acids

47.4

Weight (kDa)

9.18

Isoelectric Point (pI)

41.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04890
fragaria_vesca FvH4_7g05240
malus_domestica MD02G1259500.v1.1 MD07G1061000.v1.1 MD07G1061100.v1.1
prunus_persica Prupe.2G065600_v2.0.a1 Prupe.2G065600_v2.0.a1
pyrus_communis pycom02g22090
rosa_chinensis RchiOBHm_Chr1g0331581
rosa_laevigata RLG00000029728
rosa_multiflora Rmu_sc0008675.1_g000002
rosa_roxburghii Rroxscaffold_4G00319040
rosa_rugosa Rorug01G0094900
rosa_samantha Rh1AG118700 Rh1BG090400 Rh1CG113700 Rh1DG122900
rosa_wichuraiana Rw1G009510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 173
AclI AACGTT 1 cut(s) 16
AclWI GGATC 1 cut(s) 938
AcsI RAATTY 4 cut(s) 282, 293, 306, 888
AcuI CTGAAG 1 cut(s) 864
AfaI GTAC 2 cut(s) 37, 747
AfeI AGCGCT 1 cut(s) 1108
AfiI CCNNNNNNNGG 3 cut(s) 332, 614, 848
AflIII ACRYGT 1 cut(s) 124
AgsI TTSAA 8 cut(s) 63, 79, 92, 97, 241, 260, 298, 399
AhlI ACTAGT 1 cut(s) 836
AjiI CACGTC 1 cut(s) 274
AjnI CCWGG 4 cut(s) 136, 181, 469, 621
AjuI GAANNNNNNNTTGG 2 cut(s) 766, 798
AloI GAACNNNNNNTCC 2 cut(s) 1230, 1262
AluBI AGCT 9 cut(s) 113, 331, 507, 557, 611, 629, 918, 1244, 1287
AluI AGCT 9 cut(s) 113, 331, 507, 557, 611, 629, 918, 1244, 1287
Alw21I GWGCWC 1 cut(s) 604
Alw26I GTCTC 2 cut(s) 60, 731
AlwI GGATC 1 cut(s) 938
AlwNI CAGNNNCTG 2 cut(s) 485, 1055
Aor51HI AGCGCT 1 cut(s) 1108
AoxI GGCC 6 cut(s) 209, 349, 490, 616, 715, 1026
ApoI RAATTY 4 cut(s) 282, 293, 306, 888
AspLEI GCGC 1 cut(s) 1109
AspS9I GGNCC 5 cut(s) 350, 451, 491, 617, 1293
AsuHPI GGTGA 2 cut(s) 835, 1213
AvaII GGWCC 2 cut(s) 451, 1293
Bbv12I GWGCWC 1 cut(s) 604
BbvCI CCTCAGC 1 cut(s) 423
BccI CCATC 2 cut(s) 194, 1153
BceAI ACGGC 2 cut(s) 219, 224
BciT130I CCWGG 4 cut(s) 138, 183, 471, 623
BclI TGATCA 1 cut(s) 1227
BcoDI GTCTC 2 cut(s) 60, 731
BcuI ACTAGT 1 cut(s) 836
BfaI CTAG 4 cut(s) 33, 332, 837, 1190
BfmI CTRYAG 5 cut(s) 486, 612, 969, 1010, 1282
BfoI RGCGCY 1 cut(s) 1110
BlpI GCTNAGC 2 cut(s) 636, 933
Bme1390I CCNGG 4 cut(s) 138, 183, 471, 623
Bme18I GGWCC 2 cut(s) 451, 1293
BmgBI CACGTC 1 cut(s) 274
BmgT120I GGNCC 5 cut(s) 350, 451, 491, 617, 1293
BmiI GGNNCC 2 cut(s) 233, 619
BmrFI CCNGG 4 cut(s) 138, 183, 471, 623
BmsI GCATC 1 cut(s) 345
BoxI GACNNNNGTC 1 cut(s) 52
BplI GAGNNNNNCTC 2 cut(s) 586, 618
BpmI CTGGAG 1 cut(s) 591
Bpu10I CCTNAGC 1 cut(s) 423
Bpu1102I GCTNAGC 2 cut(s) 636, 933
BpuEI CTTGAG 2 cut(s) 327, 555
BsaBI GATNNNNATC 1 cut(s) 1226
BsaJI CCNNGG 2 cut(s) 181, 621
BsaXI ACNNNNNCTCC 4 cut(s) 1185, 1215, 1230, 1260
Bsc4I CCNNNNNNNGG 3 cut(s) 332, 614, 848
Bse1I ACTGG 1 cut(s) 1005
Bse3DI GCAATG 2 cut(s) 12, 1143
Bse8I GATNNNNATC 1 cut(s) 1226
BseBI CCWGG 4 cut(s) 138, 183, 471, 623
BseDI CCNNGG 2 cut(s) 181, 621
BseGI GGATG 5 cut(s) 694, 706, 766, 817, 889
BseJI GATNNNNATC 1 cut(s) 1226
BseLI CCNNNNNNNGG 3 cut(s) 332, 614, 848
BseMI GCAATG 2 cut(s) 12, 1143
BseMII CTCAG 7 cut(s) 414, 504, 509, 627, 726, 924, 978
BseNI ACTGG 1 cut(s) 1005
BseRI GAGGAG 2 cut(s) 594, 1148
BshFI GGCC 6 cut(s) 211, 351, 492, 618, 717, 1028
BsiHKAI GWGCWC 1 cut(s) 604
BslFI GGGAC 1 cut(s) 1043
BslI CCNNNNNNNGG 3 cut(s) 332, 614, 848
BsmAI GTCTC 2 cut(s) 60, 731
BsmBI CGTCTC 1 cut(s) 60
BsmFI GGGAC 1 cut(s) 1043
BsmI GAATGC 1 cut(s) 988
BsnI GGCC 6 cut(s) 211, 351, 492, 618, 717, 1028
Bsp1286I GDGCHC 1 cut(s) 604
Bsp143I GATC 2 cut(s) 943, 1227
Bsp1720I GCTNAGC 2 cut(s) 636, 933
BspACI CCGC 1 cut(s) 173
BspANI GGCC 6 cut(s) 211, 351, 492, 618, 717, 1028
BspCNI CTCAG 7 cut(s) 415, 505, 508, 628, 727, 925, 979
BspLI GGNNCC 2 cut(s) 233, 619
BspMAI CTGCAG 4 cut(s) 490, 616, 973, 1014
BspPI GGATC 1 cut(s) 938
BspQI GCTCTTC 3 cut(s) 96, 514, 774
BsrDI GCAATG 2 cut(s) 12, 1143
BsrI ACTGG 1 cut(s) 1005
BssECI CCNNGG 2 cut(s) 181, 621
BssMI GATC 2 cut(s) 943, 1227
Bst2UI CCWGG 4 cut(s) 138, 183, 471, 623
Bst6I CTCTTC 7 cut(s) 66, 96, 400, 514, 774, 812, 1206
BstC8I GCNNGC 3 cut(s) 490, 616, 969
BstDEI CTNAG 8 cut(s) 423, 495, 513, 636, 735, 864, 933, 987
BstENI CCTNNNNNAGG 1 cut(s) 846
BstF5I GGATG 5 cut(s) 694, 706, 766, 817, 889
BstH2I RGCGCY 1 cut(s) 1110
BstHHI GCGC 1 cut(s) 1109
BstKTI GATC 2 cut(s) 946, 1230
BstMAI GTCTC 2 cut(s) 60, 731
BstMBI GATC 2 cut(s) 943, 1227
BstMWI GCNNNNNNNGC 6 cut(s) 419, 425, 563, 608, 785, 1268
BstNI CCWGG 4 cut(s) 138, 183, 471, 623
BstNSI RCATGY 2 cut(s) 128, 941
BstPAI GACNNNNGTC 1 cut(s) 52
BstSCI CCNGG 4 cut(s) 136, 181, 469, 621
BstSFI CTRYAG 5 cut(s) 486, 612, 969, 1010, 1282
BsuRI GGCC 6 cut(s) 211, 351, 492, 618, 717, 1028
BtrI CACGTC 1 cut(s) 274
BtsCI GGATG 5 cut(s) 694, 706, 766, 817, 889
Cac8I GCNNGC 3 cut(s) 490, 616, 969
CaiI CAGNNNCTG 2 cut(s) 485, 1055
CfoI GCGC 1 cut(s) 1109
Cfr13I GGNCC 5 cut(s) 350, 451, 491, 617, 1293
CsiI ACCWGGT 1 cut(s) 469
Csp6I GTAC 2 cut(s) 36, 746
CspCI CAANNNNNGTGG 2 cut(s) 682, 717
CviAII CATG 5 cut(s) 125, 287, 938, 1180, 1309
CviQI GTAC 2 cut(s) 36, 746
DdeI CTNAG 8 cut(s) 423, 495, 513, 636, 735, 864, 933, 987
DpnI GATC 2 cut(s) 945, 1229
DpnII GATC 2 cut(s) 943, 1227
Eam1104I CTCTTC 7 cut(s) 66, 96, 400, 514, 774, 812, 1206
EarI CTCTTC 7 cut(s) 66, 96, 400, 514, 774, 812, 1206
Eco147I AGGCCT 1 cut(s) 717
Eco47I GGWCC 2 cut(s) 451, 1293
Eco47III AGCGCT 1 cut(s) 1108
Eco57I CTGAAG 1 cut(s) 864
EcoNI CCTNNNNNAGG 1 cut(s) 846
EcoO109I RGGNCCY 4 cut(s) 350, 451, 491, 617
EcoRII CCWGG 4 cut(s) 136, 181, 469, 621
Esp3I CGTCTC 1 cut(s) 60
FaeI CATG 5 cut(s) 128, 290, 941, 1183, 1312
FalI AAGNNNNNCTT 2 cut(s) 71, 103
FaqI GGGAC 1 cut(s) 1043
FatI CATG 5 cut(s) 124, 286, 937, 1179, 1308
FbaI TGATCA 1 cut(s) 1227
FokI GGATG 5 cut(s) 693, 701, 773, 824, 896
FspBI CTAG 4 cut(s) 33, 332, 837, 1190
GlaI GCGC 1 cut(s) 1108
GsuI CTGGAG 1 cut(s) 591
HaeII RGCGCY 1 cut(s) 1110
HaeIII GGCC 6 cut(s) 211, 351, 492, 618, 717, 1028
HhaI GCGC 1 cut(s) 1109
Hin1II CATG 5 cut(s) 128, 290, 941, 1183, 1312
Hin6I GCGC 1 cut(s) 1107
HinP1I GCGC 1 cut(s) 1107
HincII GTYRAC 1 cut(s) 1114
HindII GTYRAC 1 cut(s) 1114
HinfI GANTC 2 cut(s) 27, 1139
HphI GGTGA 2 cut(s) 835, 1213
Hpy166II GTNNAC 4 cut(s) 748, 860, 927, 1114
Hpy188I TCNGA 4 cut(s) 498, 514, 723, 957
Hpy188III TCNNGA 6 cut(s) 260, 536, 572, 793, 842, 1299
Hpy8I GTNNAC 4 cut(s) 748, 860, 927, 1114
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 6 cut(s) 91, 142, 259, 728, 839, 1009
HpyCH4IV ACGT 3 cut(s) 16, 117, 273
HpyCH4V TGCA 6 cut(s) 488, 614, 971, 1012, 1151, 1169
HpyF10VI GCNNNNNNNGC 6 cut(s) 419, 425, 563, 608, 785, 1268
HpyF3I CTNAG 8 cut(s) 423, 495, 513, 636, 735, 864, 933, 987
HpySE526I ACGT 3 cut(s) 16, 117, 273
Hsp92II CATG 5 cut(s) 128, 290, 941, 1183, 1312
HspAI GCGC 1 cut(s) 1107
Ksp22I TGATCA 1 cut(s) 1227
Kzo9I GATC 2 cut(s) 943, 1227
LguI GCTCTTC 3 cut(s) 96, 514, 774
LmnI GCTCC 5 cut(s) 151, 231, 607, 1104, 1238
LweI GCATC 1 cut(s) 345
MabI ACCWGGT 1 cut(s) 469
MaeI CTAG 4 cut(s) 33, 332, 837, 1190
MaeII ACGT 3 cut(s) 16, 117, 273
MaeIII GTNAC 1 cut(s) 867
MalI GATC 2 cut(s) 945, 1229
MboI GATC 2 cut(s) 943, 1227
MboII GAAGA 8 cut(s) 83, 113, 387, 501, 761, 829, 1223, 1247
MhlI GDGCHC 1 cut(s) 604
MmeI TCCRAC 1 cut(s) 431
MseI TTAA 1 cut(s) 192
MspA1I CMGCKG 2 cut(s) 611, 1244
MspR9I CCNGG 4 cut(s) 138, 183, 471, 623
Mva1269I GAATGC 1 cut(s) 988
MvaI CCWGG 4 cut(s) 138, 183, 471, 623
MwoI GCNNNNNNNGC 6 cut(s) 419, 425, 563, 608, 785, 1268
NdeII GATC 2 cut(s) 943, 1227
NlaIII CATG 5 cut(s) 128, 290, 941, 1183, 1312
NlaIV GGNNCC 2 cut(s) 233, 619
NmuCI GTSAC 1 cut(s) 867
NspI RCATGY 2 cut(s) 128, 941
PceI AGGCCT 1 cut(s) 717
PciI ACATGT 1 cut(s) 124
PciSI GCTCTTC 3 cut(s) 96, 514, 774
PctI GAATGC 1 cut(s) 988
PfeI GAWTC 2 cut(s) 27, 1139
PpuMI RGGWCCY 1 cut(s) 451
PscI ACATGT 1 cut(s) 124
PshAI GACNNNNGTC 1 cut(s) 52
Psp1406I AACGTT 1 cut(s) 16
Psp5II RGGWCCY 1 cut(s) 451
Psp6I CCWGG 4 cut(s) 136, 181, 469, 621
PspGI CCWGG 4 cut(s) 136, 181, 469, 621
PspN4I GGNNCC 2 cut(s) 233, 619
PspPI GGNCC 5 cut(s) 350, 451, 491, 617, 1293
PspPPI RGGWCCY 1 cut(s) 451
PstI CTGCAG 4 cut(s) 490, 616, 973, 1014
PstNI CAGNNNCTG 2 cut(s) 485, 1055
PvuII CAGCTG 2 cut(s) 611, 1244
RsaI GTAC 2 cut(s) 37, 747
RsaNI GTAC 2 cut(s) 36, 746
SapI GCTCTTC 3 cut(s) 96, 514, 774
SaqAI TTAA 1 cut(s) 192
Sau3AI GATC 2 cut(s) 943, 1227
Sau96I GGNCC 5 cut(s) 350, 451, 491, 617, 1293
ScrFI CCNGG 4 cut(s) 138, 183, 471, 623
SduI GDGCHC 1 cut(s) 604
SexAI ACCWGGT 1 cut(s) 469
SfaNI GCATC 1 cut(s) 345
SfcI CTRYAG 5 cut(s) 486, 612, 969, 1010, 1282
SinI GGWCC 2 cut(s) 451, 1293
SmlI CTYRAG 2 cut(s) 342, 570
SmoI CTYRAG 2 cut(s) 342, 570
SpeI ACTAGT 1 cut(s) 836
SseBI AGGCCT 1 cut(s) 717
SsiI CCGC 1 cut(s) 173
SspMI CTAG 4 cut(s) 33, 332, 837, 1190
StuI AGGCCT 1 cut(s) 717
StyD4I CCNGG 4 cut(s) 136, 181, 469, 621
TaiI ACGT 3 cut(s) 19, 120, 276
TaqII GACCGA 1 cut(s) 1131
TatI WGTACW 1 cut(s) 745
TauI GCSGC 1 cut(s) 176
TfiI GAWTC 2 cut(s) 27, 1139
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TseFI GTSAC 1 cut(s) 867
Tsp45I GTSAC 1 cut(s) 867
TspDTI ATGAA 7 cut(s) 84, 119, 275, 591, 690, 900, 1224
TspGWI ACGGA 1 cut(s) 450
VpaK11BI GGWCC 2 cut(s) 451, 1293
XagI CCTNNNNNAGG 1 cut(s) 846
XapI RAATTY 4 cut(s) 282, 293, 306, 888
XceI RCATGY 2 cut(s) 128, 941
XspI CTAG 4 cut(s) 33, 332, 837, 1190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.