Prupe.2G102500_v2.0.a1

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0010569
Physical Location & Seq
Forward (+)
15840192 .. 15840781
590 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G102500.1

Sequence Viewer

Length: 375 bp
ATGGAAAGTAAAGATACAAATAAAATCAAACTTGTTCAGTCTGCATGGTGTGAAGTTTGTAAAGTCAATTGTAACAGCAATGACACCTATATCAAACACCTAAATGATAACAGTGCCTTAACCTCAAATGTTCCATCAGCTGCAACAAATGCAATAATTGGACCAATGGAAAACCCAGGAGCCAAGGGTTACCAGCCAGAGAAGGATTTGGAGACAAAGAAGCGAAAGATCATATTAGGAGGAGCAGCAGCTAGTGCGGTCAGAAGTACAGTTTTCAGTTCTCATCTTGCTGGTCAGAAGCATGCTGCTATGGTGAAGAAACAGGCAGAAGTTGGAGTAGCAATCAGAGCCTCTCAACAGATAACCGTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-met

Protein Analysis

125

Amino Acids

13.21

Weight (kDa)

9.38

Isoelectric Point (pI)

24.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 257
AfaI GTAC 1 cut(s) 268
AjnI CCWGG 1 cut(s) 175
AluBI AGCT 2 cut(s) 140, 251
AluI AGCT 2 cut(s) 140, 251
Alw26I GTCTC 1 cut(s) 206
ApeKI GCWGC 4 cut(s) 140, 245, 248, 305
AspS9I GGNCC 1 cut(s) 161
AsuHPI GGTGA 1 cut(s) 325
AvaII GGWCC 1 cut(s) 161
BbvI GCAGC 4 cut(s) 127, 257, 260, 292
BccI CCATC 1 cut(s) 142
BciT130I CCWGG 1 cut(s) 177
BcoDI GTCTC 1 cut(s) 206
BfaI CTAG 1 cut(s) 252
BisI GCNGC 4 cut(s) 141, 246, 249, 306
BlsI GCNGC 4 cut(s) 142, 247, 250, 307
Bme1390I CCNGG 1 cut(s) 177
Bme18I GGWCC 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 161
BmiI GGNNCC 1 cut(s) 181
BmrFI CCNGG 1 cut(s) 177
BsaJI CCNNGG 2 cut(s) 175, 183
Bse3DI GCAATG 1 cut(s) 85
BseBI CCWGG 1 cut(s) 177
BseDI CCNNGG 2 cut(s) 175, 183
BseMI GCAATG 1 cut(s) 85
BseRI GAGGAG 1 cut(s) 255
BseXI GCAGC 4 cut(s) 127, 257, 260, 292
BsmAI GTCTC 1 cut(s) 206
Bsp143I GATC 1 cut(s) 228
BspACI CCGC 1 cut(s) 257
BspLI GGNNCC 1 cut(s) 181
BsrDI GCAATG 1 cut(s) 85
BssECI CCNNGG 2 cut(s) 175, 183
BssMI GATC 1 cut(s) 228
BssT1I CCWWGG 1 cut(s) 183
Bst2UI CCWGG 1 cut(s) 177
Bst4CI ACNGT 3 cut(s) 113, 271, 367
BstAPI GCANNNNNTGC 2 cut(s) 149, 254
BstC8I GCNNGC 1 cut(s) 303
BstEII GGTNACC 1 cut(s) 188
BstKTI GATC 1 cut(s) 231
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 1 cut(s) 228
BstMWI GCNNNNNNNGC 3 cut(s) 149, 254, 347
BstNI CCWGG 1 cut(s) 177
BstNSI RCATGY 1 cut(s) 305
BstPI GGTNACC 1 cut(s) 188
BstSCI CCNGG 1 cut(s) 175
BstV1I GCAGC 4 cut(s) 127, 257, 260, 292
BtsIMutI CAGTG 1 cut(s) 118
Cac8I GCNNGC 1 cut(s) 303
Cfr13I GGNCC 1 cut(s) 161
Csp6I GTAC 1 cut(s) 267
CviAII CATG 2 cut(s) 45, 302
CviJI RGCY 5 cut(s) 140, 182, 196, 251, 350
CviKI_1 RGCY 5 cut(s) 140, 182, 196, 251, 350
CviQI GTAC 1 cut(s) 267
DpnI GATC 1 cut(s) 230
DpnII GATC 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 161
Eco91I GGTNACC 1 cut(s) 188
EcoO65I GGTNACC 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 175
EcoT14I CCWWGG 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 2 cut(s) 48, 305
FaiI YATR 5 cut(s) 46, 90, 233, 303, 311
FatI CATG 2 cut(s) 44, 301
Fnu4HI GCNGC 4 cut(s) 141, 246, 249, 306
Fsp4HI GCNGC 4 cut(s) 141, 246, 249, 306
FspBI CTAG 1 cut(s) 252
GluI GCNGC 4 cut(s) 141, 246, 249, 306
Hin1II CATG 2 cut(s) 48, 305
HphI GGTGA 1 cut(s) 325
Hpy188I TCNGA 3 cut(s) 263, 297, 347
Hpy188III TCNNGA 1 cut(s) 372
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 3 cut(s) 113, 271, 367
HpyCH4V TGCA 3 cut(s) 44, 143, 152
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 254, 347
Hsp92II CATG 2 cut(s) 48, 305
Kzo9I GATC 1 cut(s) 228
LmnI GCTCC 2 cut(s) 179, 242
LpnPI CCDG 6 cut(s) 162, 189, 206, 210, 276, 308
Lsp1109I GCAGC 4 cut(s) 127, 257, 260, 292
MaeI CTAG 1 cut(s) 252
MaeIII GTNAC 2 cut(s) 71, 188
MalI GATC 1 cut(s) 230
MboI GATC 1 cut(s) 228
MboII GAAGA 1 cut(s) 328
MfeI CAATTG 1 cut(s) 67
MluCI AATT 2 cut(s) 67, 156
MmeI TCCRAC 1 cut(s) 313
MnlI CCTC 3 cut(s) 133, 233, 361
MseI TTAA 1 cut(s) 119
MslI CAYNNNNRTG 1 cut(s) 102
MspA1I CMGCKG 1 cut(s) 140
MspR9I CCNGG 1 cut(s) 177
MunI CAATTG 1 cut(s) 67
MvaI CCWGG 1 cut(s) 177
MwoI GCNNNNNNNGC 3 cut(s) 149, 254, 347
NdeII GATC 1 cut(s) 228
NlaIII CATG 2 cut(s) 48, 305
NlaIV GGNNCC 1 cut(s) 181
NspI RCATGY 1 cut(s) 305
PaeI GCATGC 1 cut(s) 305
PkrI GCNGC 4 cut(s) 142, 247, 250, 307
Psp6I CCWGG 1 cut(s) 175
PspEI GGTNACC 1 cut(s) 188
PspGI CCWGG 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 181
PspPI GGNCC 1 cut(s) 161
PvuII CAGCTG 1 cut(s) 140
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
RseI CAYNNNNRTG 1 cut(s) 102
SaqAI TTAA 1 cut(s) 119
SatI GCNGC 4 cut(s) 141, 246, 249, 306
Sau3AI GATC 1 cut(s) 228
Sau96I GGNCC 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 177
SetI ASST 5 cut(s) 89, 102, 125, 142, 253
SinI GGWCC 1 cut(s) 161
SmiMI CAYNNNNRTG 1 cut(s) 102
SphI GCATGC 1 cut(s) 305
Sse9I AATT 2 cut(s) 67, 156
SsiI CCGC 1 cut(s) 257
SspMI CTAG 1 cut(s) 252
StyD4I CCNGG 1 cut(s) 175
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 3 cut(s) 113, 271, 367
TasI AATT 2 cut(s) 67, 156
TatI WGTACW 1 cut(s) 266
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TscAI CASTG 1 cut(s) 118
TseI GCWGC 4 cut(s) 140, 245, 248, 305
TspRI CASTG 1 cut(s) 118
VpaK11BI GGWCC 1 cut(s) 161
XceI RCATGY 1 cut(s) 305
XspI CTAG 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.