Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0010569

Physical Location & Seq

Genomic Coordinates Reverse (-)

16173655 .. 16177774

Gene Structure 4120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G201200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGTGTGCAAACCCAACACCTTCTTCAACGAACCACGCCAAAATCCCGTCATACACTAACCCTAATTCCAACTTCACTACAAAGTCACACTCCCAAATGTTCAATCCTTCACAAGATTCCACCAATCTCACCTATCACATTCCTTATCAATCCAACACCATAAACCCAAACAGTAACAAACGTTGGTTGTTTCCTCCACCCGTGTTTCCCTCTGCAGTAGCCTTCGATCCAGCTCTTCGCCCGCCTGGAACTGAACCAAATGCCAATTCAGGCTCATACTCGTGGACCCATGTTGTATTCCAAGCTCAAACGCCATTTGTTGAAGACCCAAATGCTGGTTCTCAGAATGGGGCTATCCAGCAAGCTGAACCCATTGGACACGAAGCTTCTATCAAGTTTCTGAATGAGAGTTTGTTAGTGCCCACCACTTCAAATTCTTTGTGGAATAGCAATGGGACAAATCGGTGTGATGTTTGTAATCTCAGTTGTAGTAGCAAAGAAAATTACGAGGCACACATATTGGGAAAGAAACACCAGAAAAAAATCAGAATGCAATATAATCCCACTGCTGCAGCCTCTAATGTTCTAAACAATATCAGTCTGCCAAGCCAAACAAGCAGTGTAGGTGGGCAAGTGATATTTGGGGGTTCAGGTGTGGCTGCTGGTGTAGAATTGGAAACAAAGAGACGTAAGGTTGTGAATGGTGGTGCAGCGGATGATTCGATGGTGGTTTGCACAATATGCAACGTTGTTTGCAATAGCCAAGAAGTTTACATTAAGCACTTGGCTGGTAAAAGGCACAAGGCTCAGGCTAGTTTAGTGGCTCCAAATGTTGGCTCATATTTTGCTGCACTTCAATCTGAAGTTACTGGCATTTGGAATAAAGATCCAAATAAAATCAAACTTGTTCAGTCTGCATGGTGTGAAGTTTGTAAAGTCAGTTGTAACAGCAATGACACCTACATCAAACACCTAGTCGGAAAGAAACATCAGAAGAACTTGGAGCAACTTGAAAAGTTAAAGAATGATGGCAGTGCCTCAACCTCAAATGTTCCATCAGCTGCAACAAATGCAATAATTGGACCAATGGAAAACCTAGGAGCCAAGGGTTCCCAGCCAGAGGAGGATTTGGAGACAAAGAAGCGAAAGATCATATCAGGAGGAGCAGCAGCTGGTGCAGTCAGAACGTGTACTGTATGCAATGTGGTGTGCAATAGTCAGACAGTTTTCAATTCTCATCTTGCTGGTCAGAAGCATGCTGCTATGGTGAAGAAACAGGCAGAAGTTGGAGTAGCAATCAGAGCCTCTCAACAGATAACCGCTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-met

Protein Analysis

443

Amino Acids

47.33

Weight (kDa)

9.06

Isoelectric Point (pI)

41.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010569)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14276 FvH4_5g14276
malus_domestica	MD14G1208900.v1.1
prunus_persica	Prupe.2G102500_v2.0.a1 Prupe.5G201200_v2.0.a1 Prupe.5G201200_v2.0.a1 Prupe.5G201200_v2.0.a1 Prupe.5G201200_v2.0.a1
pyrus_communis	pycom14g17260 pycom14g17270
rosa_chinensis	RchiOBHm_Chr7g0182621
rosa_laevigata	RLG00000005115
rosa_multiflora	Rmu_sc0005811.1_g000011 Rmu_sc0013953.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271120
rosa_rugosa	Rorug06G0448600
rosa_samantha	Rh7AG052500 Rh7BG051700 Rh7CG053400 Rh7DG051700
rosa_wichuraiana	Rw7G004260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	335, 833
AciI	CCGC	3 cut(s)	242, 713, 1320
AclI	AACGTT	2 cut(s)	181, 747
AclWI	GGATC	2 cut(s)	221, 881
AcsI	RAATTY	1 cut(s)	433
AcuI	CTGAAG	1 cut(s)	882
AfaI	GTAC	1 cut(s)	1192
AfiI	CCNNNNNNNGG	3 cut(s)	335, 833, 1120
AflIII	ACRYGT	1 cut(s)	1187
AgsI	TTSAA	7 cut(s)	27, 103, 323, 432, 857, 1013, 1231
AjnI	CCWGG	1 cut(s)	244
AjuI	GAANNNNNNNTTGG	6 cut(s)	7, 39, 250, 282, 322, 354
AluBI	AGCT	6 cut(s)	233, 305, 365, 386, 1061, 1172
AluI	AGCT	6 cut(s)	233, 305, 365, 386, 1061, 1172
Alw26I	GTCTC	2 cut(s)	679, 1127
AlwI	GGATC	2 cut(s)	221, 881
AlwNI	CAGNNNCTG	1 cut(s)	1172
ApeKI	GCWGC	9 cut(s)	569, 572, 659, 710, 848, 1061, 1166, 1169, 1259
ApoI	RAATTY	1 cut(s)	433
ArsI	GACNNNNNNTTYG	2 cut(s)	960, 992
AspA2I	CCTAGG	1 cut(s)	1096
AspS9I	GGNCC	2 cut(s)	285, 1082
AsuHPI	GGTGA	2 cut(s)	121, 1279
AvaII	GGWCC	2 cut(s)	285, 1082
AvrII	CCTAGG	1 cut(s)	1096
BaeGI	GKGCMC	1 cut(s)	423
BauI	CACGAG	1 cut(s)	280
BbsI	GAAGAC	1 cut(s)	330
BbvI	GCAGC	9 cut(s)	556, 584, 646, 722, 835, 1048, 1178, 1181, 1246
BccI	CCATC	3 cut(s)	718, 1022, 1063
BciT130I	CCWGG	1 cut(s)	246
BcoDI	GTCTC	2 cut(s)	679, 1127
BfaI	CTAG	3 cut(s)	813, 974, 1097
BfmI	CTRYAG	2 cut(s)	213, 570
BisI	GCNGC	9 cut(s)	570, 573, 660, 711, 849, 1062, 1167, 1170, 1260
BlnI	CCTAGG	1 cut(s)	1096
BlsI	GCNGC	9 cut(s)	571, 574, 661, 712, 850, 1063, 1168, 1171, 1261
Bme1390I	CCNGG	1 cut(s)	246
Bme18I	GGWCC	2 cut(s)	285, 1082
BmgT120I	GGNCC	2 cut(s)	285, 1082
BmiI	GGNNCC	4 cut(s)	287, 825, 1102, 1111
BmrFI	CCNGG	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	330
Bpu10I	CCTNAGC	1 cut(s)	807
BsaJI	CCNNGG	2 cut(s)	1096, 1104
Bsc4I	CCNNNNNNNGG	3 cut(s)	335, 833, 1120
Bse1I	ACTGG	1 cut(s)	874
Bse3DI	GCAATG	3 cut(s)	457, 958, 1207
BseBI	CCWGG	1 cut(s)	246
BseDI	CCNNGG	2 cut(s)	1096, 1104
BseGI	GGATG	1 cut(s)	721
BseLI	CCNNNNNNNGG	3 cut(s)	335, 833, 1120
BseMI	GCAATG	3 cut(s)	457, 958, 1207
BseMII	CTCAG	3 cut(s)	356, 496, 821
BseNI	ACTGG	1 cut(s)	874
BseRI	GAGGAG	2 cut(s)	1136, 1176
BseSI	GKGCMC	1 cut(s)	423
BseXI	GCAGC	9 cut(s)	556, 584, 646, 722, 835, 1048, 1178, 1181, 1246
BseYI	CCCAGC	1 cut(s)	1113
BsgI	GTGCAG	3 cut(s)	729, 834, 1197
BslFI	GGGAC	1 cut(s)	469
BslI	CCNNNNNNNGG	3 cut(s)	335, 833, 1120
BsmAI	GTCTC	2 cut(s)	679, 1127
BsmBI	CGTCTC	1 cut(s)	679
BsmFI	GGGAC	1 cut(s)	469
BsmI	GAATGC	1 cut(s)	555
Bsp1286I	GDGCHC	1 cut(s)	423
Bsp143I	GATC	3 cut(s)	226, 886, 1149
BspACI	CCGC	3 cut(s)	242, 713, 1320
BspCNI	CTCAG	3 cut(s)	355, 495, 820
BspLI	GGNNCC	4 cut(s)	287, 825, 1102, 1111
BspMAI	CTGCAG	2 cut(s)	217, 574
BspPI	GGATC	2 cut(s)	221, 881
BspQI	GCTCTTC	1 cut(s)	240
BsrDI	GCAATG	3 cut(s)	457, 958, 1207
BsrI	ACTGG	1 cut(s)	874
BssECI	CCNNGG	2 cut(s)	1096, 1104
BssMI	GATC	3 cut(s)	226, 886, 1149
BssSI	CACGAG	1 cut(s)	280
BssT1I	CCWWGG	2 cut(s)	1096, 1104
Bst2BI	CACGAG	1 cut(s)	280
Bst2UI	CCWGG	1 cut(s)	246
Bst4CI	ACNGT	3 cut(s)	173, 1195, 1225
Bst6I	CTCTTC	1 cut(s)	240
BstAPI	GCANNNNNTGC	3 cut(s)	741, 1070, 1175
BstC8I	GCNNGC	3 cut(s)	242, 363, 1257
BstDEI	CTNAG	3 cut(s)	342, 482, 807
BstF5I	GGATG	1 cut(s)	721
BstKTI	GATC	3 cut(s)	229, 889, 1152
BstMAI	GTCTC	2 cut(s)	679, 1127
BstMBI	GATC	3 cut(s)	226, 886, 1149
BstMWI	GCNNNNNNNGC	5 cut(s)	615, 741, 1070, 1175, 1301
BstNI	CCWGG	1 cut(s)	246
BstNSI	RCATGY	1 cut(s)	1259
BstSCI	CCNGG	1 cut(s)	244
BstSFI	CTRYAG	2 cut(s)	213, 570
BstSLI	GKGCMC	1 cut(s)	423
BstV1I	GCAGC	9 cut(s)	556, 584, 646, 722, 835, 1048, 1178, 1181, 1246
BstV2I	GAAGAC	1 cut(s)	330
BstX2I	RGATCY	1 cut(s)	886
BstYI	RGATCY	1 cut(s)	886
BtsCI	GGATG	1 cut(s)	721
BtsI	GCAGTG	3 cut(s)	564, 625, 1039
BtsIMutI	CAGTG	3 cut(s)	564, 625, 1039
Cac8I	GCNNGC	3 cut(s)	242, 363, 1257
CaiI	CAGNNNCTG	1 cut(s)	1172
Cfr13I	GGNCC	2 cut(s)	285, 1082
Csp6I	GTAC	1 cut(s)	1191
CviAII	CATG	3 cut(s)	290, 918, 1256
CviQI	GTAC	1 cut(s)	1191
DdeI	CTNAG	3 cut(s)	342, 482, 807
DpnI	GATC	3 cut(s)	228, 888, 1151
DpnII	GATC	3 cut(s)	226, 886, 1149
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Eco130I	CCWWGG	2 cut(s)	1096, 1104
Eco47I	GGWCC	2 cut(s)	285, 1082
Eco57I	CTGAAG	1 cut(s)	882
EcoRII	CCWGG	1 cut(s)	244
EcoT14I	CCWWGG	2 cut(s)	1096, 1104
ErhI	CCWWGG	2 cut(s)	1096, 1104
Esp3I	CGTCTC	1 cut(s)	679
FaeI	CATG	3 cut(s)	293, 921, 1259
FaqI	GGGAC	1 cut(s)	469
FatI	CATG	3 cut(s)	289, 917, 1255
FauI	CCCGC	1 cut(s)	249
Fnu4HI	GCNGC	9 cut(s)	570, 573, 660, 711, 849, 1062, 1167, 1170, 1260
FokI	GGATG	1 cut(s)	728
Fsp4HI	GCNGC	9 cut(s)	570, 573, 660, 711, 849, 1062, 1167, 1170, 1260
FspBI	CTAG	3 cut(s)	813, 974, 1097
GluI	GCNGC	9 cut(s)	570, 573, 660, 711, 849, 1062, 1167, 1170, 1260
GsaI	CCCAGC	1 cut(s)	1117
Hin1II	CATG	3 cut(s)	293, 921, 1259
HindIII	AAGCTT	1 cut(s)	384
HinfI	GANTC	2 cut(s)	116, 719
HphI	GGTGA	2 cut(s)	121, 1279
Hpy166II	GTNNAC	3 cut(s)	285, 772, 1191
Hpy188III	TCNNGA	2 cut(s)	1158, 1326
Hpy8I	GTNNAC	3 cut(s)	285, 772, 1191
HpyAV	CCTTC	3 cut(s)	30, 117, 232
HpyCH4III	ACNGT	3 cut(s)	173, 1195, 1225
HpyCH4IV	ACGT	4 cut(s)	181, 688, 747, 1187
HpyF10VI	GCNNNNNNNGC	5 cut(s)	615, 741, 1070, 1175, 1301
HpyF3I	CTNAG	3 cut(s)	342, 482, 807
HpySE526I	ACGT	4 cut(s)	181, 688, 747, 1187
Hsp92II	CATG	3 cut(s)	293, 921, 1259
Kzo9I	GATC	3 cut(s)	226, 886, 1149
LguI	GCTCTTC	1 cut(s)	240
LmnI	GCTCC	4 cut(s)	829, 1003, 1100, 1163
Lsp1109I	GCAGC	9 cut(s)	556, 584, 646, 722, 835, 1048, 1178, 1181, 1246
MaeI	CTAG	3 cut(s)	813, 974, 1097
MaeII	ACGT	4 cut(s)	181, 688, 747, 1187
MaeIII	GTNAC	4 cut(s)	84, 173, 865, 944
MalI	GATC	3 cut(s)	228, 888, 1151
MboI	GATC	3 cut(s)	226, 886, 1149
MboII	GAAGA	5 cut(s)	15, 227, 335, 1006, 1282
MflI	RGATCY	1 cut(s)	886
MhlI	GDGCHC	1 cut(s)	423
MluCI	AATT	7 cut(s)	64, 265, 433, 502, 671, 1077, 1231
MmeI	TCCRAC	4 cut(s)	93, 177, 958, 1267
MseI	TTAA	2 cut(s)	777, 1019
MslI	CAYNNNNRTG	1 cut(s)	280
MspA1I	CMGCKG	3 cut(s)	713, 1061, 1172
MspR9I	CCNGG	1 cut(s)	246
Mva1269I	GAATGC	1 cut(s)	555
MvaI	CCWGG	1 cut(s)	246
MwoI	GCNNNNNNNGC	5 cut(s)	615, 741, 1070, 1175, 1301
NdeII	GATC	3 cut(s)	226, 886, 1149
NlaIII	CATG	3 cut(s)	293, 921, 1259
NlaIV	GGNNCC	4 cut(s)	287, 825, 1102, 1111
NmuCI	GTSAC	1 cut(s)	84
NspI	RCATGY	1 cut(s)	1259
PaeI	GCATGC	1 cut(s)	1259
PciSI	GCTCTTC	1 cut(s)	240
PctI	GAATGC	1 cut(s)	555
PfeI	GAWTC	2 cut(s)	116, 719
PflMI	CCANNNNNTGG	2 cut(s)	335, 833
PkrI	GCNGC	9 cut(s)	571, 574, 661, 712, 850, 1063, 1168, 1171, 1261
Psp1406I	AACGTT	2 cut(s)	181, 747
Psp6I	CCWGG	1 cut(s)	244
PspFI	CCCAGC	1 cut(s)	1113
PspGI	CCWGG	1 cut(s)	244
PspN4I	GGNNCC	4 cut(s)	287, 825, 1102, 1111
PspPI	GGNCC	2 cut(s)	285, 1082
PstI	CTGCAG	2 cut(s)	217, 574
PstNI	CAGNNNCTG	1 cut(s)	1172
PsuI	RGATCY	1 cut(s)	886
PvuII	CAGCTG	2 cut(s)	1061, 1172
RsaI	GTAC	1 cut(s)	1192
RsaNI	GTAC	1 cut(s)	1191
RseI	CAYNNNNRTG	1 cut(s)	280
SapI	GCTCTTC	1 cut(s)	240
SaqAI	TTAA	2 cut(s)	777, 1019
SatI	GCNGC	9 cut(s)	570, 573, 660, 711, 849, 1062, 1167, 1170, 1260
Sau3AI	GATC	3 cut(s)	226, 886, 1149
Sau96I	GGNCC	2 cut(s)	285, 1082
ScrFI	CCNGG	1 cut(s)	246
SduI	GDGCHC	1 cut(s)	423
SfcI	CTRYAG	2 cut(s)	213, 570
SinI	GGWCC	2 cut(s)	285, 1082
SmiMI	CAYNNNNRTG	1 cut(s)	280
SphI	GCATGC	1 cut(s)	1259
Sse9I	AATT	7 cut(s)	64, 265, 433, 502, 671, 1077, 1231
SsiI	CCGC	3 cut(s)	242, 713, 1320
SspMI	CTAG	3 cut(s)	813, 974, 1097
StyD4I	CCNGG	1 cut(s)	244
StyI	CCWWGG	2 cut(s)	1096, 1104
TaaI	ACNGT	3 cut(s)	173, 1195, 1225
TaiI	ACGT	4 cut(s)	184, 691, 750, 1190
TaqI	TCGA	2 cut(s)	225, 722
TasI	AATT	7 cut(s)	64, 265, 433, 502, 671, 1077, 1231
TatI	WGTACW	1 cut(s)	1190
TfiI	GAWTC	2 cut(s)	116, 719
Tru1I	TTAA	2 cut(s)	777, 1019
Tru9I	TTAA	2 cut(s)	777, 1019
TscAI	CASTG	3 cut(s)	571, 625, 1039
TseFI	GTSAC	1 cut(s)	84
TseI	GCWGC	9 cut(s)	569, 572, 659, 710, 848, 1061, 1166, 1169, 1259
Tsp45I	GTSAC	1 cut(s)	84
TspRI	CASTG	3 cut(s)	571, 625, 1039
Van91I	CCANNNNNTGG	2 cut(s)	335, 833
VpaK11BI	GGWCC	2 cut(s)	285, 1082
XapI	RAATTY	1 cut(s)	433
XceI	RCATGY	1 cut(s)	1259
XmaJI	CCTAGG	1 cut(s)	1096
XspI	CTAG	3 cut(s)	813, 974, 1097

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.