Rmu_sc0005811.1_g000011

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005811.1
OG0010569
Physical Location & Seq
Reverse (-)
39052 .. 40628
1577 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005811.1_g000011.1.cds

Sequence Viewer

Length: 1080 bp
atgttcaattcttcacaatatccggccactttcacctatcaatatcccaacaccaccttcgaccccaacactcaattctcctattttcctccggtagcgtccgatcacccacccggagtcgacccgggtcccaattcaggcccatacccattgacccatgttggcctccaaagtcacctgccatttggtgaagacccaaatgctccttcacatggttggcttgtcaatcaagctgttcccatctcatatgacgcttcaatcaaatctttgaatgagagcttgttagtacccacaaatgcaaattctttgtggaatagcatttggacagatcaacctattgcgtttccaggaacgtccaatggtacagacaatgccagtctgcctagcgaaatgagcggcgcgggcgggctagtgatgtgtgggagtacaagtgcagttgctggtgaggagttgggaacaaagagaaggaaggttgacgcagcagcggttggttttgtgaagatttgcgaaatgtgcaatgtcactacccatagcccagacgtttacaagaagcatttggctgggaaaaggcacgctgctcaggctaacttaatgcatcgaagggctgggttgaattctgctcccgcaatccaatccaagtccaatggcatttggaagaaagacccaaataaagtcaagcttgttcagtgtgtatggtgtgaattttgcaagatctactgtaacagccaggacgtctatgtcaaacacatagttggaaggaaacatcagaggaacttggatcaacttgaaaagttgaagaacaaaggtactgccccgaccacaaatgttccatcaggtgcaagaaatccacaaattggtcccatggaaaagacttcccagtcaaaggctccttcacaagaggatttggagatgaaaaagcagaaggttataagaggaggagcagcagctggggaagttagaacatgcaatatttgcaatgtagtgtgcaacagccagatagctttcagttttcatctttctggtcagaaacatgctgcaatggtggcgaaacaaccattagaagcaggttctggtgtgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-met

Protein Analysis

359

Amino Acids

38.71

Weight (kDa)

8.99

Isoelectric Point (pI)

42.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 929
AarI CACCTGC 1 cut(s) 186
AasI GACNNNNNNGTC 2 cut(s) 737, 877
AatII GACGTC 1 cut(s) 735
Acc36I ACCTGC 2 cut(s) 186, 1055
AccB7I CCANNNNNTGG 1 cut(s) 854
AccBSI CCGCTC 1 cut(s) 396
AccI GTMKAC 1 cut(s) 120
AccII CGCG 1 cut(s) 401
AciI CCGC 5 cut(s) 396, 401, 405, 485, 624
AclWI GGATC 1 cut(s) 786
AcoI YGGCCR 1 cut(s) 24
AcsI RAATTY 3 cut(s) 301, 613, 701
AcyI GRCGYC 1 cut(s) 732
AfaI GTAC 4 cut(s) 288, 364, 427, 808
AfiI CCNNNNNNNGG 4 cut(s) 137, 212, 854, 883
AgsI TTSAA 6 cut(s) 7, 258, 271, 613, 788, 796
AjnI CCWGG 2 cut(s) 346, 726
AjuI GAANNNNNNNTTGG 6 cut(s) 41, 59, 73, 91, 190, 222
AluBI AGCT 5 cut(s) 233, 279, 679, 947, 1001
AluI AGCT 5 cut(s) 233, 279, 679, 947, 1001
AlwI GGATC 1 cut(s) 786
AlwNI CAGNNNCTG 3 cut(s) 440, 947, 1070
Ama87I CYCGRG 1 cut(s) 124
AoxI GGCC 3 cut(s) 24, 139, 163
ApeKI GCWGC 6 cut(s) 479, 482, 575, 941, 944, 1034
ApoI RAATTY 3 cut(s) 301, 613, 701
AspLEI GCGC 1 cut(s) 401
AspS9I GGNCC 3 cut(s) 128, 140, 857
AsuC2I CCSGG 3 cut(s) 114, 125, 126
AsuHPI GGTGA 5 cut(s) 25, 98, 167, 200, 455
AvaI CYCGRG 1 cut(s) 124
AvaII GGWCC 2 cut(s) 128, 857
BbsI GAAGAC 1 cut(s) 198
BbvI GCAGC 6 cut(s) 491, 494, 562, 953, 956, 1021
BccI CCATC 2 cut(s) 248, 838
BciT130I CCWGG 2 cut(s) 348, 728
BcnI CCSGG 3 cut(s) 114, 125, 126
BfaI CTAG 2 cut(s) 384, 410
BfuAI ACCTGC 2 cut(s) 186, 1055
BglII AGATCT 1 cut(s) 711
BisI GCNGC 7 cut(s) 397, 480, 483, 576, 942, 945, 1035
BlsI GCNGC 7 cut(s) 398, 481, 484, 577, 943, 946, 1036
Bme1390I CCNGG 5 cut(s) 114, 125, 126, 348, 728
Bme18I GGWCC 2 cut(s) 128, 857
BmeT110I CYCGRG 1 cut(s) 124
BmgT120I GGNCC 3 cut(s) 128, 140, 857
BmiI GGNNCC 4 cut(s) 129, 130, 859, 888
BmrFI CCNGG 5 cut(s) 114, 125, 126, 348, 728
BmrI ACTGGG 1 cut(s) 871
BmsI GCATC 1 cut(s) 604
BmuI ACTGGG 1 cut(s) 871
BoxI GACNNNNGTC 1 cut(s) 126
BpiI GAAGAC 1 cut(s) 198
Bpu10I CCTNAGC 1 cut(s) 579
BpuMI CCSGG 3 cut(s) 114, 125, 126
BsaHI GRCGYC 1 cut(s) 732
BsaJI CCNNGG 2 cut(s) 124, 861
BsaWI WCCGGW 1 cut(s) 91
BsaXI ACNNNNNCTCC 2 cut(s) 415, 445
Bsc4I CCNNNNNNNGG 4 cut(s) 137, 212, 854, 883
Bse1I ACTGG 2 cut(s) 375, 877
Bse3DI GCAATG 3 cut(s) 523, 982, 1044
BseBI CCWGG 2 cut(s) 348, 728
BseDI CCNNGG 2 cut(s) 124, 861
BseLI CCNNNNNNNGG 4 cut(s) 137, 212, 854, 883
BseMI GCAATG 3 cut(s) 523, 982, 1044
BseMII CTCAG 1 cut(s) 593
BseNI ACTGG 2 cut(s) 375, 877
BseRI GAGGAG 3 cut(s) 461, 948, 951
BseXI GCAGC 6 cut(s) 491, 494, 562, 953, 956, 1021
BseYI CCCAGC 3 cut(s) 560, 605, 947
BsgI GTGCAG 1 cut(s) 453
Bsh1236I CGCG 1 cut(s) 401
BshFI GGCC 3 cut(s) 26, 141, 165
BsiHKCI CYCGRG 1 cut(s) 124
BsiSI CCGG 4 cut(s) 23, 92, 114, 125
BslFI GGGAC 2 cut(s) 114, 843
BslI CCNNNNNNNGG 4 cut(s) 137, 212, 854, 883
BsmFI GGGAC 2 cut(s) 114, 843
BsnI GGCC 3 cut(s) 26, 141, 165
BsoBI CYCGRG 1 cut(s) 124
Bsp143I GATC 4 cut(s) 103, 328, 711, 778
Bsp19I CCATGG 1 cut(s) 861
BspACI CCGC 5 cut(s) 396, 401, 405, 485, 624
BspANI GGCC 3 cut(s) 26, 141, 165
BspCNI CTCAG 1 cut(s) 592
BspFNI CGCG 1 cut(s) 401
BspLI GGNNCC 4 cut(s) 129, 130, 859, 888
BspMI ACCTGC 2 cut(s) 186, 1055
BspPI GGATC 1 cut(s) 786
BsrBI CCGCTC 1 cut(s) 396
BsrDI GCAATG 3 cut(s) 523, 982, 1044
BsrI ACTGG 2 cut(s) 375, 877
BssECI CCNNGG 2 cut(s) 124, 861
BssMI GATC 4 cut(s) 103, 328, 711, 778
BssNI GRCGYC 1 cut(s) 732
BssT1I CCWWGG 1 cut(s) 861
Bst2UI CCWGG 2 cut(s) 348, 728
Bst4CI ACNGT 1 cut(s) 719
BstACI GRCGYC 1 cut(s) 732
BstAPI GCANNNNNTGC 1 cut(s) 972
BstC8I GCNNGC 3 cut(s) 403, 407, 573
BstDEI CTNAG 1 cut(s) 579
BstDSI CCRYGG 1 cut(s) 861
BstFNI CGCG 1 cut(s) 401
BstHHI GCGC 1 cut(s) 401
BstKTI GATC 4 cut(s) 106, 331, 714, 781
BstMBI GATC 4 cut(s) 103, 328, 711, 778
BstMWI GCNNNNNNNGC 6 cut(s) 393, 402, 513, 581, 972, 1043
BstNI CCWGG 2 cut(s) 348, 728
BstNSI RCATGY 2 cut(s) 966, 1034
BstPAI GACNNNNGTC 1 cut(s) 126
BstSCI CCNGG 5 cut(s) 112, 123, 124, 346, 726
BstUI CGCG 1 cut(s) 401
BstV1I GCAGC 6 cut(s) 491, 494, 562, 953, 956, 1021
BstV2I GAAGAC 1 cut(s) 198
BstX2I RGATCY 1 cut(s) 711
BstYI RGATCY 1 cut(s) 711
BsuRI GGCC 3 cut(s) 26, 141, 165
BtgI CCRYGG 1 cut(s) 861
BtsIMutI CAGTG 1 cut(s) 692
BveI ACCTGC 2 cut(s) 186, 1055
Cac8I GCNNGC 3 cut(s) 403, 407, 573
CaiI CAGNNNCTG 3 cut(s) 440, 947, 1070
CfoI GCGC 1 cut(s) 401
Cfr13I GGNCC 3 cut(s) 128, 140, 857
Cfr9I CCCGGG 1 cut(s) 124
CseI GACGC 3 cut(s) 87, 260, 485
Csp6I GTAC 4 cut(s) 287, 363, 426, 807
CviAII CATG 5 cut(s) 158, 212, 862, 963, 1031
CviQI GTAC 4 cut(s) 287, 363, 426, 807
DdeI CTNAG 1 cut(s) 579
DpnI GATC 4 cut(s) 105, 330, 713, 780
DpnII GATC 4 cut(s) 103, 328, 711, 778
DrdI GACNNNNNNGTC 2 cut(s) 737, 877
DseDI GACNNNNNNGTC 2 cut(s) 737, 877
EaeI YGGCCR 1 cut(s) 24
Eco130I CCWWGG 1 cut(s) 861
Eco47I GGWCC 2 cut(s) 128, 857
Eco88I CYCGRG 1 cut(s) 124
EcoO109I RGGNCCY 1 cut(s) 128
EcoRI GAATTC 1 cut(s) 613
EcoRII CCWGG 2 cut(s) 346, 726
EcoT14I CCWWGG 1 cut(s) 861
EcoT22I ATGCAT 1 cut(s) 597
ErhI CCWWGG 1 cut(s) 861
FaeI CATG 5 cut(s) 161, 215, 865, 966, 1034
FalI AAGNNNNNCTT 2 cut(s) 663, 695
FaqI GGGAC 2 cut(s) 114, 843
FatI CATG 5 cut(s) 157, 211, 861, 962, 1030
FauI CCCGC 3 cut(s) 394, 398, 631
FauNDI CATATG 1 cut(s) 247
FblI GTMKAC 1 cut(s) 120
Fnu4HI GCNGC 7 cut(s) 397, 480, 483, 576, 942, 945, 1035
Fsp4HI GCNGC 7 cut(s) 397, 480, 483, 576, 942, 945, 1035
FspBI CTAG 2 cut(s) 384, 410
GlaI GCGC 1 cut(s) 400
GluI GCNGC 7 cut(s) 397, 480, 483, 576, 942, 945, 1035
GsaI CCCAGC 3 cut(s) 564, 609, 951
HaeIII GGCC 3 cut(s) 26, 141, 165
HapII CCGG 4 cut(s) 23, 92, 114, 125
HgaI GACGC 3 cut(s) 87, 260, 485
HhaI GCGC 1 cut(s) 401
Hin1I GRCGYC 1 cut(s) 732
Hin1II CATG 5 cut(s) 161, 215, 865, 966, 1034
Hin6I GCGC 1 cut(s) 399
HinP1I GCGC 1 cut(s) 399
HincII GTYRAC 2 cut(s) 121, 475
HindII GTYRAC 2 cut(s) 121, 475
HindIII AAGCTT 1 cut(s) 677
HinfI GANTC 1 cut(s) 117
HpaII CCGG 4 cut(s) 23, 92, 114, 125
HphI GGTGA 5 cut(s) 25, 98, 167, 200, 455
Hpy166II GTNNAC 3 cut(s) 121, 475, 544
Hpy188I TCNGA 3 cut(s) 103, 768, 1026
Hpy8I GTNNAC 3 cut(s) 121, 475, 544
HpyAV CCTTC 8 cut(s) 67, 216, 459, 463, 594, 750, 900, 916
HpyCH4III ACNGT 1 cut(s) 719
HpyCH4IV ACGT 3 cut(s) 353, 540, 732
HpyF10VI GCNNNNNNNGC 6 cut(s) 393, 402, 513, 581, 972, 1043
HpyF3I CTNAG 1 cut(s) 579
HpySE526I ACGT 3 cut(s) 353, 540, 732
Hsp92I GRCGYC 1 cut(s) 732
Hsp92II CATG 5 cut(s) 161, 215, 865, 966, 1034
HspAI GCGC 1 cut(s) 399
KflI GGGWCCC 1 cut(s) 128
Kzo9I GATC 4 cut(s) 103, 328, 711, 778
LmnI GCTCC 4 cut(s) 208, 625, 892, 938
Lsp1109I GCAGC 6 cut(s) 491, 494, 562, 953, 956, 1021
LweI GCATC 1 cut(s) 604
MaeI CTAG 2 cut(s) 384, 410
MaeII ACGT 3 cut(s) 353, 540, 732
MaeIII GTNAC 3 cut(s) 173, 520, 719
MalI GATC 4 cut(s) 105, 330, 713, 780
MbiI CCGCTC 1 cut(s) 396
MboI GATC 4 cut(s) 103, 328, 711, 778
MboII GAAGA 5 cut(s) 3, 203, 511, 667, 808
MflI RGATCY 1 cut(s) 711
MluCI AATT 7 cut(s) 7, 74, 133, 301, 613, 701, 852
MlyI GAGTC 1 cut(s) 126
MmeI TCCRAC 1 cut(s) 733
MnlI CCTC 7 cut(s) 99, 176, 439, 762, 892, 926, 929
Mph1103I ATGCAT 1 cut(s) 597
MseI TTAA 1 cut(s) 590
MspA1I CMGCKG 2 cut(s) 485, 947
MspI CCGG 4 cut(s) 23, 92, 114, 125
MspR9I CCNGG 5 cut(s) 114, 125, 126, 348, 728
MvaI CCWGG 2 cut(s) 348, 728
MvnI CGCG 1 cut(s) 401
MwoI GCNNNNNNNGC 6 cut(s) 393, 402, 513, 581, 972, 1043
NciI CCSGG 3 cut(s) 114, 125, 126
NcoI CCATGG 1 cut(s) 861
NdeI CATATG 1 cut(s) 247
NdeII GATC 4 cut(s) 103, 328, 711, 778
NlaIII CATG 5 cut(s) 161, 215, 865, 966, 1034
NlaIV GGNNCC 4 cut(s) 129, 130, 859, 888
NmuCI GTSAC 2 cut(s) 173, 520
NsiI ATGCAT 1 cut(s) 597
NspI RCATGY 2 cut(s) 966, 1034
PaqCI CACCTGC 1 cut(s) 186
PflMI CCANNNNNTGG 1 cut(s) 854
PfoI TCCNGGA 1 cut(s) 346
PkrI GCNGC 7 cut(s) 398, 481, 484, 577, 943, 946, 1036
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
PpuMI RGGWCCY 1 cut(s) 128
PshAI GACNNNNGTC 1 cut(s) 126
PsiI TTATAA 1 cut(s) 929
Psp5II RGGWCCY 1 cut(s) 128
Psp6I CCWGG 2 cut(s) 346, 726
PspFI CCCAGC 3 cut(s) 560, 605, 947
PspGI CCWGG 2 cut(s) 346, 726
PspN4I GGNNCC 4 cut(s) 129, 130, 859, 888
PspPI GGNCC 3 cut(s) 128, 140, 857
PspPPI RGGWCCY 1 cut(s) 128
PstNI CAGNNNCTG 3 cut(s) 440, 947, 1070
PsuI RGATCY 1 cut(s) 711
PvuII CAGCTG 1 cut(s) 947
RsaI GTAC 4 cut(s) 288, 364, 427, 808
RsaNI GTAC 4 cut(s) 287, 363, 426, 807
SalI GTCGAC 1 cut(s) 119
SaqAI TTAA 1 cut(s) 590
SatI GCNGC 7 cut(s) 397, 480, 483, 576, 942, 945, 1035
Sau3AI GATC 4 cut(s) 103, 328, 711, 778
Sau96I GGNCC 3 cut(s) 128, 140, 857
SchI GAGTC 1 cut(s) 126
ScrFI CCNGG 5 cut(s) 114, 125, 126, 348, 728
SfaNI GCATC 1 cut(s) 604
SinI GGWCC 2 cut(s) 128, 857
SmaI CCCGGG 1 cut(s) 126
Sse9I AATT 7 cut(s) 7, 74, 133, 301, 613, 701, 852
SsiI CCGC 5 cut(s) 396, 401, 405, 485, 624
SspI AATATT 1 cut(s) 970
SspMI CTAG 2 cut(s) 384, 410
StyD4I CCNGG 5 cut(s) 112, 123, 124, 346, 726
StyI CCWWGG 1 cut(s) 861
TaaI ACNGT 1 cut(s) 719
TaiI ACGT 3 cut(s) 356, 543, 735
TaqI TCGA 3 cut(s) 60, 120, 598
TasI AATT 7 cut(s) 7, 74, 133, 301, 613, 701, 852
TatI WGTACW 1 cut(s) 425
TauI GCSGC 1 cut(s) 399
Tru1I TTAA 1 cut(s) 590
Tru9I TTAA 1 cut(s) 590
TscAI CASTG 1 cut(s) 692
TseFI GTSAC 2 cut(s) 173, 520
TseI GCWGC 6 cut(s) 479, 482, 575, 941, 944, 1034
Tsp45I GTSAC 2 cut(s) 173, 520
TspDTI ATGAA 2 cut(s) 926, 1001
TspMI CCCGGG 1 cut(s) 124
TspRI CASTG 1 cut(s) 692
Van91I CCANNNNNTGG 1 cut(s) 854
VpaK11BI GGWCC 2 cut(s) 128, 857
XapI RAATTY 3 cut(s) 301, 613, 701
XceI RCATGY 2 cut(s) 966, 1034
XmaI CCCGGG 1 cut(s) 124
XmiI GTMKAC 1 cut(s) 120
XspI CTAG 2 cut(s) 384, 410
ZraI GACGTC 1 cut(s) 733
Zsp2I ATGCAT 1 cut(s) 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.