Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0010569

Physical Location & Seq

Genomic Coordinates Reverse (-)

19272196 .. 19274386

Gene Structure 2191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g17260.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGCATCCACCATTGCTTATAGTTGAAGTGATTCAAAGTCCCAAAACCAAAATATTCCAACCACCTATAAGCAGTCATGTATCCCTCTCTTTCCCGCACCAAAATTCCCATTTCTCTCAGTCTCTCTGCAAAAACCCACCATCCTGTGGAATGATAATCCCACCGGATTCCAACTTTCCTTCCGGTTCACAATCCTCAATCTTTATTCCTCCACAATATTCCAACAATTTTACCTTTCAAATTCCCTATGAATCCAACCCCACTAACCCAATTTGGTCTTTTCCTCAACCGGTGGTTCCCTCGGCAGTAGCCGCCGCGGATCCAGCCTGTCACCCGCCCGGCACCGACCCGTATGACTATTCGGGCTTGTACCCGTGGACCCGTGTCGGATTCCAAGGTCAGACGCCTTTTGGTGAAGACCCAAATATCCGTCCGCAGAACTGGGTTGCCAAGCAAGCTGAACCTGTTCGATATGAAGCTTCTTTCACATCCTTGAATGAGTGTATGTCTGTGCCCGCAACGGCCTCGAATTCTTTGTGGAATAGCAGTTGGACAAATCAACCTTTGGAAAATACTGCTAACATGAACACTCCACAACCAACTGTGGTTGTCCAGTCCCTGCGGTGTGATGTCTGTGATATCTATTGTACTAGCAAACCAATTTATGAGACACACATAGCGGGAAAGAAACACCAGAAGAAAGTCGCAATGCAACATAATCCTGGTGTGACTGCTGGTTCAGAATTGGAAACAAAGAGGCGTAAGATTTTGAGGGGCGGTTCAACAGTTGATTCTGTGAGGGTTTGCACCATATGCAACATTACTTGCAATAGTGAAGAAGTTTATAATAAGCATCTATATGGAAAAAGGCACAAGGCTCAGGCTAGCTTAATGGCTCTAGATGGCGGGCCATATATTGCTGCAGTTGGATCTCAGTTCAATGGAATATGGAAGAAAGACCCAAATAAAGTCAAGCTTGTTCAATCTGCATGGTGTGAAGTTTGCAAAATCAATTGTAACAGCAACGATGCCTACATTGCACACCTAGTTGGAAAGAAACATAAGAAGAACTTGGAGCAACTGGGAAAGTCCAAGAATGATGGGAGTGTTGCTGCAACAAATGCGATAATTGGGACAACGAAAAACCCAGAAGCAGAGTCATCAAAGGCTTACCAGCTACAGGTTCCAAAAGAAGACTTGGAGACAAAGAAGAAAAAGGTCATATCTGGAGGAGCAATAGCTAGTGCGGTCAGAACGTGTACTGTGTGCAATGTGGTGTGCAATAGCCAGACAGTTTTTAGTTCTCATCTTGCCGGTCAGAAGCACGTTGCTATGGTTAAGAAACAAGCAGAAGCCGAAGTAGCAACTACAGGCCTATTATTGCGTCCTAAAACTCAGAATTCCGCTTTGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-met

Protein Analysis

472

Amino Acids

51.43

Weight (kDa)

9.08

Isoelectric Point (pI)

48.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010569)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14276 FvH4_5g14276
malus_domestica	MD14G1208900.v1.1
prunus_persica	Prupe.2G102500_v2.0.a1 Prupe.5G201200_v2.0.a1 Prupe.5G201200_v2.0.a1 Prupe.5G201200_v2.0.a1 Prupe.5G201200_v2.0.a1
pyrus_communis	pycom14g17260 pycom14g17270
rosa_chinensis	RchiOBHm_Chr7g0182621
rosa_laevigata	RLG00000005115
rosa_multiflora	Rmu_sc0005811.1_g000011 Rmu_sc0013953.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271120
rosa_rugosa	Rorug06G0448600
rosa_samantha	Rh7AG052500 Rh7BG051700 Rh7CG053400 Rh7DG051700
rosa_wichuraiana	Rw7G004260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	846
AccB1I	GGYRCC	1 cut(s)	341
AccB7I	CCANNNNNTGG	1 cut(s)	146
AccII	CGCG	1 cut(s)	317
AclWI	GGATC	3 cut(s)	314, 327, 937
AcsI	RAATTY	4 cut(s)	103, 240, 529, 1399
AcyI	GRCGYC	1 cut(s)	404
AfaI	GTAC	3 cut(s)	371, 649, 1261
AfiI	CCNNNNNNNGG	2 cut(s)	146, 1180
AflIII	ACRYGT	1 cut(s)	1256
AgeI	ACCGGT	1 cut(s)	289
AgsI	TTSAA	8 cut(s)	26, 35, 239, 496, 783, 940, 983, 1411
AjnI	CCWGG	1 cut(s)	721
AluBI	AGCT	6 cut(s)	458, 479, 888, 976, 1177, 1241
AluI	AGCT	6 cut(s)	458, 479, 888, 976, 1177, 1241
Alw26I	GTCTC	3 cut(s)	126, 662, 1196
AlwI	GGATC	3 cut(s)	314, 327, 937
AlwNI	CAGNNNCTG	1 cut(s)	619
AoxI	GGCC	3 cut(s)	522, 908, 1372
ApeKI	GCWGC	2 cut(s)	920, 1112
ApoI	RAATTY	4 cut(s)	103, 240, 529, 1399
AsiGI	ACCGGT	1 cut(s)	289
Asp700I	GAANNNNTTC	2 cut(s)	30, 465
AspS9I	GGNCC	2 cut(s)	378, 908
AsuC2I	CCSGG	1 cut(s)	339
AsuHPI	GGTGA	2 cut(s)	323, 425
AsuNHI	GCTAGC	1 cut(s)	884
AvaII	GGWCC	1 cut(s)	378
BaeGI	GKGCMC	1 cut(s)	516
BamHI	GGATCC	1 cut(s)	319
BanI	GGYRCC	1 cut(s)	341
BbsI	GAAGAC	2 cut(s)	423, 1200
BbvI	GCAGC	2 cut(s)	907, 1099
BccI	CCATC	3 cut(s)	148, 896, 1094
BceAI	ACGGC	1 cut(s)	537
BcgI	CGANNNNNNTGC	2 cut(s)	507, 541
BciT130I	CCWGG	1 cut(s)	723
BciVI	GTATCC	1 cut(s)	91
BcnI	CCSGG	1 cut(s)	339
BcoDI	GTCTC	3 cut(s)	126, 662, 1196
BfaI	CTAG	5 cut(s)	651, 885, 899, 1046, 1242
BfmI	CTRYAG	3 cut(s)	921, 1178, 1368
BfuI	GTATCC	1 cut(s)	91
BisI	GCNGC	4 cut(s)	312, 315, 921, 1113
BlsI	GCNGC	4 cut(s)	313, 316, 922, 1114
Bme1390I	CCNGG	2 cut(s)	339, 723
Bme18I	GGWCC	1 cut(s)	378
BmgT120I	GGNCC	2 cut(s)	378, 908
BmiI	GGNNCC	5 cut(s)	297, 321, 343, 380, 1185
BmrFI	CCNGG	2 cut(s)	339, 723
BmrI	ACTGGG	2 cut(s)	451, 1091
BmsI	GCATC	3 cut(s)	13, 862, 1018
BmtI	GCTAGC	1 cut(s)	888
BmuI	ACTGGG	2 cut(s)	451, 1091
BoxI	GACNNNNGTC	1 cut(s)	383
BpiI	GAAGAC	2 cut(s)	423, 1200
BpmI	CTGGAG	1 cut(s)	1248
Bpu10I	CCTNAGC	1 cut(s)	879
BpuMI	CCSGG	1 cut(s)	339
BsaHI	GRCGYC	1 cut(s)	404
BsaJI	CCNNGG	4 cut(s)	300, 315, 374, 394
BsaWI	WCCGGW	3 cut(s)	163, 182, 289
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 1180
Bse118I	RCCGGY	2 cut(s)	289, 1313
Bse1I	ACTGG	3 cut(s)	446, 613, 1086
Bse3DI	GCAATG	4 cut(s)	11, 714, 1035, 1276
BseBI	CCWGG	1 cut(s)	723
BseDI	CCNNGG	4 cut(s)	300, 315, 374, 394
BseGI	GGATG	3 cut(s)	4, 140, 488
BseLI	CCNNNNNNNGG	2 cut(s)	146, 1180
BseMI	GCAATG	4 cut(s)	11, 714, 1035, 1276
BseMII	CTCAG	4 cut(s)	131, 893, 947, 1409
BseNI	ACTGG	3 cut(s)	446, 613, 1086
BseRI	GAGGAG	1 cut(s)	1245
BseSI	GKGCMC	1 cut(s)	516
BseXI	GCAGC	2 cut(s)	907, 1099
Bsh1236I	CGCG	1 cut(s)	317
BshFI	GGCC	3 cut(s)	524, 910, 1374
BshNI	GGYRCC	1 cut(s)	341
BshTI	ACCGGT	1 cut(s)	289
BsiSI	CCGG	5 cut(s)	164, 183, 290, 339, 1314
BslFI	GGGAC	3 cut(s)	24, 601, 1147
BslI	CCNNNNNNNGG	2 cut(s)	146, 1180
BsmAI	GTCTC	3 cut(s)	126, 662, 1196
BsmFI	GGGAC	3 cut(s)	24, 601, 1147
BsnI	GGCC	3 cut(s)	524, 910, 1374
Bsp1286I	GDGCHC	1 cut(s)	516
Bsp143I	GATC	2 cut(s)	319, 929
BspANI	GGCC	3 cut(s)	524, 910, 1374
BspCNI	CTCAG	4 cut(s)	130, 892, 946, 1408
BspFNI	CGCG	1 cut(s)	317
BspLI	GGNNCC	5 cut(s)	297, 321, 343, 380, 1185
BspMAI	CTGCAG	1 cut(s)	925
BspOI	GCTAGC	1 cut(s)	888
BspPI	GGATC	3 cut(s)	314, 327, 937
BspT107I	GGYRCC	1 cut(s)	341
BsrDI	GCAATG	4 cut(s)	11, 714, 1035, 1276
BsrFI	RCCGGY	2 cut(s)	289, 1313
BsrI	ACTGG	3 cut(s)	446, 613, 1086
BssAI	RCCGGY	2 cut(s)	289, 1313
BssECI	CCNNGG	4 cut(s)	300, 315, 374, 394
BssMI	GATC	2 cut(s)	319, 929
BssNI	GRCGYC	1 cut(s)	404
BssT1I	CCWWGG	1 cut(s)	394
Bst2UI	CCWGG	1 cut(s)	723
Bst4CI	ACNGT	4 cut(s)	604, 787, 1264, 1294
BstACI	GRCGYC	1 cut(s)	404
BstAPI	GCANNNNNTGC	2 cut(s)	813, 1121
BstC8I	GCNNGC	4 cut(s)	456, 516, 886, 908
BstDEI	CTNAG	4 cut(s)	117, 879, 933, 1395
BstDSI	CCRYGG	2 cut(s)	315, 374
BstF5I	GGATG	3 cut(s)	4, 140, 488
BstFNI	CGCG	1 cut(s)	317
BstKTI	GATC	2 cut(s)	322, 932
BstMAI	GTCTC	3 cut(s)	126, 662, 1196
BstMBI	GATC	2 cut(s)	319, 929
BstMWI	GCNNNNNNNGC	7 cut(s)	311, 323, 455, 813, 1037, 1121, 1361
BstNI	CCWGG	1 cut(s)	723
BstPAI	GACNNNNGTC	1 cut(s)	383
BstSCI	CCNGG	2 cut(s)	337, 721
BstSFI	CTRYAG	3 cut(s)	921, 1178, 1368
BstSLI	GKGCMC	1 cut(s)	516
BstUI	CGCG	1 cut(s)	317
BstV1I	GCAGC	2 cut(s)	907, 1099
BstV2I	GAAGAC	2 cut(s)	423, 1200
BstX2I	RGATCY	2 cut(s)	319, 929
BstYI	RGATCY	2 cut(s)	319, 929
BsuI	GTATCC	1 cut(s)	91
BsuRI	GGCC	3 cut(s)	524, 910, 1374
BtgI	CCRYGG	2 cut(s)	315, 374
BtsCI	GGATG	3 cut(s)	4, 140, 488
Cac8I	GCNNGC	4 cut(s)	456, 516, 886, 908
CaiI	CAGNNNCTG	1 cut(s)	619
Cfr10I	RCCGGY	2 cut(s)	289, 1313
Cfr13I	GGNCC	2 cut(s)	378, 908
Cfr42I	CCGCGG	1 cut(s)	318
CseI	GACGC	2 cut(s)	412, 1373
Csp6I	GTAC	3 cut(s)	370, 648, 1260
CspAI	ACCGGT	1 cut(s)	289
CviAII	CATG	3 cut(s)	77, 583, 990
CviQI	GTAC	3 cut(s)	370, 648, 1260
DdeI	CTNAG	4 cut(s)	117, 879, 933, 1395
DpnI	GATC	2 cut(s)	321, 931
DpnII	GATC	2 cut(s)	319, 929
Eco130I	CCWWGG	1 cut(s)	394
Eco147I	AGGCCT	1 cut(s)	1374
Eco32I	GATATC	1 cut(s)	640
Eco47I	GGWCC	1 cut(s)	378
EcoRI	GAATTC	2 cut(s)	529, 1399
EcoRII	CCWGG	1 cut(s)	721
EcoRV	GATATC	1 cut(s)	640
EcoT14I	CCWWGG	1 cut(s)	394
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	394
FaeI	CATG	3 cut(s)	80, 586, 993
FalI	AAGNNNNNCTT	4 cut(s)	960, 992, 1055, 1087
FaqI	GGGAC	3 cut(s)	24, 601, 1147
FatI	CATG	3 cut(s)	76, 582, 989
FauI	CCCGC	5 cut(s)	102, 342, 523, 673, 899
FauNDI	CATATG	1 cut(s)	812
Fnu4HI	GCNGC	4 cut(s)	312, 315, 921, 1113
FokI	GGATG	2 cut(s)	127, 475
Fsp4HI	GCNGC	4 cut(s)	312, 315, 921, 1113
FspBI	CTAG	5 cut(s)	651, 885, 899, 1046, 1242
GluI	GCNGC	4 cut(s)	312, 315, 921, 1113
GsuI	CTGGAG	1 cut(s)	1248
HaeIII	GGCC	3 cut(s)	524, 910, 1374
HapII	CCGG	5 cut(s)	164, 183, 290, 339, 1314
HgaI	GACGC	2 cut(s)	412, 1373
Hin1I	GRCGYC	1 cut(s)	404
Hin1II	CATG	3 cut(s)	80, 586, 993
HindIII	AAGCTT	2 cut(s)	477, 974
HinfI	GANTC	6 cut(s)	31, 167, 251, 390, 791, 1157
HpaII	CCGG	5 cut(s)	164, 183, 290, 339, 1314
HphI	GGTGA	2 cut(s)	323, 425
Hpy166II	GTNNAC	3 cut(s)	188, 378, 1260
Hpy188I	TCNGA	6 cut(s)	389, 402, 742, 1253, 1320, 1398
Hpy188III	TCNNGA	2 cut(s)	899, 1227
Hpy8I	GTNNAC	3 cut(s)	188, 378, 1260
HpyAV	CCTTC	1 cut(s)	189
HpyCH4III	ACNGT	4 cut(s)	604, 787, 1264, 1294
HpyCH4IV	ACGT	2 cut(s)	1256, 1326
HpyF10VI	GCNNNNNNNGC	7 cut(s)	311, 323, 455, 813, 1037, 1121, 1361
HpyF3I	CTNAG	4 cut(s)	117, 879, 933, 1395
HpySE526I	ACGT	2 cut(s)	1256, 1326
Hsp92I	GRCGYC	1 cut(s)	404
Hsp92II	CATG	3 cut(s)	80, 586, 993
KspI	CCGCGG	1 cut(s)	318
Kzo9I	GATC	2 cut(s)	319, 929
LmnI	GCTCC	2 cut(s)	1075, 1232
Lsp1109I	GCAGC	2 cut(s)	907, 1099
LweI	GCATC	3 cut(s)	13, 862, 1018
MaeI	CTAG	5 cut(s)	651, 885, 899, 1046, 1242
MaeII	ACGT	2 cut(s)	1256, 1326
MaeIII	GTNAC	3 cut(s)	329, 727, 1016
MalI	GATC	2 cut(s)	321, 931
MboI	GATC	2 cut(s)	319, 929
MboII	GAAGA	7 cut(s)	428, 709, 848, 964, 1078, 1205, 1222
MfeI	CAATTG	1 cut(s)	1012
MflI	RGATCY	2 cut(s)	319, 929
MhlI	GDGCHC	1 cut(s)	516
MlyI	GAGTC	1 cut(s)	1166
MmeI	TCCRAC	8 cut(s)	82, 195, 246, 279, 367, 530, 907, 1030
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	2 cut(s)	30, 465
MseI	TTAA	2 cut(s)	890, 1338
MslI	CAYNNNNRTG	1 cut(s)	858
MspA1I	CMGCKG	1 cut(s)	317
MspI	CCGG	5 cut(s)	164, 183, 290, 339, 1314
MspR9I	CCNGG	2 cut(s)	339, 723
MunI	CAATTG	1 cut(s)	1012
MvaI	CCWGG	1 cut(s)	723
MvnI	CGCG	1 cut(s)	317
MwoI	GCNNNNNNNGC	7 cut(s)	311, 323, 455, 813, 1037, 1121, 1361
NciI	CCSGG	1 cut(s)	339
NdeI	CATATG	1 cut(s)	812
NdeII	GATC	2 cut(s)	319, 929
NheI	GCTAGC	1 cut(s)	884
NlaIII	CATG	3 cut(s)	80, 586, 993
NlaIV	GGNNCC	5 cut(s)	297, 321, 343, 380, 1185
NmeAIII	GCCGAG	1 cut(s)	281
NmuCI	GTSAC	2 cut(s)	329, 727
NsiI	ATGCAT	1 cut(s)	6
PceI	AGGCCT	1 cut(s)	1374
PdmI	GAANNNNTTC	2 cut(s)	30, 465
PfeI	GAWTC	5 cut(s)	31, 167, 251, 390, 791
PflMI	CCANNNNNTGG	1 cut(s)	146
PinAI	ACCGGT	1 cut(s)	289
PkrI	GCNGC	4 cut(s)	313, 316, 922, 1114
PleI	GAGTC	1 cut(s)	1165
PpsI	GAGTC	1 cut(s)	1165
PshAI	GACNNNNGTC	1 cut(s)	383
PsiI	TTATAA	1 cut(s)	846
Psp6I	CCWGG	1 cut(s)	721
PspGI	CCWGG	1 cut(s)	721
PspN4I	GGNNCC	5 cut(s)	297, 321, 343, 380, 1185
PspPI	GGNCC	2 cut(s)	378, 908
PstI	CTGCAG	1 cut(s)	925
PstNI	CAGNNNCTG	1 cut(s)	619
PsuI	RGATCY	2 cut(s)	319, 929
RsaI	GTAC	3 cut(s)	371, 649, 1261
RsaNI	GTAC	3 cut(s)	370, 648, 1260
RseI	CAYNNNNRTG	1 cut(s)	858
SacII	CCGCGG	1 cut(s)	318
SaqAI	TTAA	2 cut(s)	890, 1338
SatI	GCNGC	4 cut(s)	312, 315, 921, 1113
Sau3AI	GATC	2 cut(s)	319, 929
Sau96I	GGNCC	2 cut(s)	378, 908
SchI	GAGTC	1 cut(s)	1166
ScrFI	CCNGG	2 cut(s)	339, 723
SduI	GDGCHC	1 cut(s)	516
SfaNI	GCATC	3 cut(s)	13, 862, 1018
SfcI	CTRYAG	3 cut(s)	921, 1178, 1368
Sfr303I	CCGCGG	1 cut(s)	318
SgrBI	CCGCGG	1 cut(s)	318
SinI	GGWCC	1 cut(s)	378
SmiMI	CAYNNNNRTG	1 cut(s)	858
SseBI	AGGCCT	1 cut(s)	1374
SspI	AATATT	2 cut(s)	54, 218
SspMI	CTAG	5 cut(s)	651, 885, 899, 1046, 1242
StuI	AGGCCT	1 cut(s)	1374
StyD4I	CCNGG	2 cut(s)	337, 721
StyI	CCWWGG	1 cut(s)	394
TaaI	ACNGT	4 cut(s)	604, 787, 1264, 1294
TaiI	ACGT	2 cut(s)	1259, 1329
TaqI	TCGA	2 cut(s)	469, 527
TatI	WGTACW	2 cut(s)	647, 1259
TauI	GCSGC	2 cut(s)	314, 317
TfiI	GAWTC	5 cut(s)	31, 167, 251, 390, 791
Tru1I	TTAA	2 cut(s)	890, 1338
Tru9I	TTAA	2 cut(s)	890, 1338
TseFI	GTSAC	2 cut(s)	329, 727
TseI	GCWGC	2 cut(s)	920, 1112
Tsp45I	GTSAC	2 cut(s)	329, 727
TspDTI	ATGAA	3 cut(s)	264, 489, 599
TspGWI	ACGGA	1 cut(s)	419
Van91I	CCANNNNNTGG	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	378
XapI	RAATTY	4 cut(s)	103, 240, 529, 1399
XbaI	TCTAGA	1 cut(s)	898
XmnI	GAANNNNTTC	2 cut(s)	30, 465
XspI	CTAG	5 cut(s)	651, 885, 899, 1046, 1242
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.