Rh7DG051700

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0010569
Physical Location & Seq
Reverse (-)
3966275 .. 3967847
1573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG051700.1

Sequence Viewer

Length: 1080 bp
ATGTTCAATTCTTCACAATATCCGGCCACTTTCACCTATCAATATCCCAACACCACCTTCGACCCCAACACTCAATTCTCCTATTTTCCTCCGGTAGCGTCCGATCACCCACCCGGAGTCGACCCGGGTCCCAATTCAGGCCCATACCCATTGACCCATGTTGGCCTCCAAAGTCACCTGCCATTTGGTGAAGACCCAAATGCTCCTTCACATGGTTGGCTTGTCAATCAAGCTGTTCCCATCTCATATGACGCTTCAATCAAATCTTTGAATGAGAGCTTGTTAGTGCCCACAAATGCAAATTCTTTGTGGAATAGCATTTGGACAGATCAACCTAATGCGTTTCCAGGAACGTCCAATGGTACAGACAATGCCAGTCTGCCTAGCGAAATGAGCGGCGCGGGCGGGCAAGTGATGTGTGGGAGTACAAGTGCAGTTGCTGGTGAGGAGTTGGGAACAAAGAGAAGGAAGGTTGACGCAGCAGCGGTTGGTTTTGTGAAGATTTGCGAAATGTGCAATGTCACTACCCATAGCCCAGACGTTTACAAGAAGCATTTGGCTGGGAAAAGGCACGCTGCTCAGGCTAACTTAATGCATCGAAGGGCTGGGTTGAATTCTGCTCCCGCAATCCAATCCAAGTCCAATGGCATTTGGAAGAAAGACCCAAATAAAGTCAAGCTTGTTCAGTGTGTATGGTGTGAATTTTGCAAGATCTACTGTAACAGCCAGGACGTCTATGTCAAACACATAGTTGGAAGGAAACATCAGAGGAACTTGGATCAACTTGAAAAGTTGAAGAACAAAGGTACTGCCCCGACCACAAATGTTCCATCAGGTGCAAGAAATCCACAAATTGGTCCCATGGAAAAGACTTCCCAGTCAAAGGCTCCTTCACAAGAGGATTTGGAGATGAAAAAGCAGAAGGTTATAAGAGGAGGAGCAGCAGCTGGGGAAGTTAGAACATGCAATATTTGCAATGTAGTGTGCAACAGCCAGATAGCTTTCAGTTTTCATCTTTCTGGTCAGAAACATGCTGCAATGGTGGCGAAACAACCATTAGAAGCAGGTTCTGGTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-met

Protein Analysis

359

Amino Acids

38.73

Weight (kDa)

8.99

Isoelectric Point (pI)

42.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-met PF12874 168 - 191 1e-05 Zinc-finger of C2H2 type
zf-met PF12874 232 - 255 8.6e-06 Zinc-finger of C2H2 type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 929
AarI CACCTGC 1 cut(s) 186
AasI GACNNNNNNGTC 2 cut(s) 737, 877
AatII GACGTC 1 cut(s) 735
Acc36I ACCTGC 2 cut(s) 186, 1055
AccB7I CCANNNNNTGG 1 cut(s) 854
AccBSI CCGCTC 1 cut(s) 396
AccI GTMKAC 1 cut(s) 120
AccII CGCG 1 cut(s) 401
AciI CCGC 5 cut(s) 396, 401, 405, 485, 624
AclWI GGATC 1 cut(s) 786
AcoI YGGCCR 1 cut(s) 24
AcsI RAATTY 3 cut(s) 301, 613, 701
AcyI GRCGYC 1 cut(s) 732
AfaI GTAC 3 cut(s) 364, 427, 808
AfiI CCNNNNNNNGG 4 cut(s) 137, 212, 854, 883
AgsI TTSAA 6 cut(s) 7, 258, 271, 613, 788, 796
AjnI CCWGG 2 cut(s) 346, 726
AjuI GAANNNNNNNTTGG 6 cut(s) 41, 59, 73, 91, 190, 222
AluBI AGCT 5 cut(s) 233, 279, 679, 947, 1001
AluI AGCT 5 cut(s) 233, 279, 679, 947, 1001
AlwI GGATC 1 cut(s) 786
AlwNI CAGNNNCTG 3 cut(s) 440, 947, 1070
Ama87I CYCGRG 1 cut(s) 124
AoxI GGCC 3 cut(s) 24, 139, 163
ApeKI GCWGC 6 cut(s) 479, 482, 575, 941, 944, 1034
ApoI RAATTY 3 cut(s) 301, 613, 701
AspLEI GCGC 1 cut(s) 401
AspS9I GGNCC 3 cut(s) 128, 140, 857
AsuC2I CCSGG 3 cut(s) 114, 125, 126
AsuHPI GGTGA 5 cut(s) 25, 98, 167, 200, 455
AvaI CYCGRG 1 cut(s) 124
AvaII GGWCC 2 cut(s) 128, 857
BaeGI GKGCMC 1 cut(s) 291
BbsI GAAGAC 1 cut(s) 198
BbvI GCAGC 6 cut(s) 491, 494, 562, 953, 956, 1021
BccI CCATC 2 cut(s) 248, 838
BciT130I CCWGG 2 cut(s) 348, 728
BcnI CCSGG 3 cut(s) 114, 125, 126
BfaI CTAG 1 cut(s) 384
BfuAI ACCTGC 2 cut(s) 186, 1055
BglII AGATCT 1 cut(s) 711
BisI GCNGC 7 cut(s) 397, 480, 483, 576, 942, 945, 1035
BlsI GCNGC 7 cut(s) 398, 481, 484, 577, 943, 946, 1036
Bme1390I CCNGG 5 cut(s) 114, 125, 126, 348, 728
Bme18I GGWCC 2 cut(s) 128, 857
BmeT110I CYCGRG 1 cut(s) 124
BmgT120I GGNCC 3 cut(s) 128, 140, 857
BmiI GGNNCC 4 cut(s) 129, 130, 859, 888
BmrFI CCNGG 5 cut(s) 114, 125, 126, 348, 728
BmrI ACTGGG 1 cut(s) 871
BmsI GCATC 1 cut(s) 604
BmuI ACTGGG 1 cut(s) 871
BoxI GACNNNNGTC 1 cut(s) 126
BpiI GAAGAC 1 cut(s) 198
Bpu10I CCTNAGC 1 cut(s) 579
BpuMI CCSGG 3 cut(s) 114, 125, 126
BsaHI GRCGYC 1 cut(s) 732
BsaJI CCNNGG 2 cut(s) 124, 861
BsaWI WCCGGW 1 cut(s) 91
BsaXI ACNNNNNCTCC 2 cut(s) 415, 445
Bsc4I CCNNNNNNNGG 4 cut(s) 137, 212, 854, 883
Bse1I ACTGG 2 cut(s) 375, 877
Bse3DI GCAATG 3 cut(s) 523, 982, 1044
BseBI CCWGG 2 cut(s) 348, 728
BseDI CCNNGG 2 cut(s) 124, 861
BseLI CCNNNNNNNGG 4 cut(s) 137, 212, 854, 883
BseMI GCAATG 3 cut(s) 523, 982, 1044
BseMII CTCAG 1 cut(s) 593
BseNI ACTGG 2 cut(s) 375, 877
BseRI GAGGAG 3 cut(s) 461, 948, 951
BseSI GKGCMC 1 cut(s) 291
BseXI GCAGC 6 cut(s) 491, 494, 562, 953, 956, 1021
BseYI CCCAGC 3 cut(s) 560, 605, 947
BsgI GTGCAG 1 cut(s) 453
Bsh1236I CGCG 1 cut(s) 401
BshFI GGCC 3 cut(s) 26, 141, 165
BsiHKCI CYCGRG 1 cut(s) 124
BsiSI CCGG 4 cut(s) 23, 92, 114, 125
BslFI GGGAC 2 cut(s) 114, 843
BslI CCNNNNNNNGG 4 cut(s) 137, 212, 854, 883
BsmFI GGGAC 2 cut(s) 114, 843
BsnI GGCC 3 cut(s) 26, 141, 165
BsoBI CYCGRG 1 cut(s) 124
Bsp1286I GDGCHC 1 cut(s) 291
Bsp143I GATC 4 cut(s) 103, 328, 711, 778
Bsp19I CCATGG 1 cut(s) 861
BspACI CCGC 5 cut(s) 396, 401, 405, 485, 624
BspANI GGCC 3 cut(s) 26, 141, 165
BspCNI CTCAG 1 cut(s) 592
BspFNI CGCG 1 cut(s) 401
BspLI GGNNCC 4 cut(s) 129, 130, 859, 888
BspMI ACCTGC 2 cut(s) 186, 1055
BspPI GGATC 1 cut(s) 786
BsrBI CCGCTC 1 cut(s) 396
BsrDI GCAATG 3 cut(s) 523, 982, 1044
BsrI ACTGG 2 cut(s) 375, 877
BssECI CCNNGG 2 cut(s) 124, 861
BssMI GATC 4 cut(s) 103, 328, 711, 778
BssNI GRCGYC 1 cut(s) 732
BssT1I CCWWGG 1 cut(s) 861
Bst2UI CCWGG 2 cut(s) 348, 728
Bst4CI ACNGT 1 cut(s) 719
BstACI GRCGYC 1 cut(s) 732
BstAPI GCANNNNNTGC 1 cut(s) 972
BstC8I GCNNGC 3 cut(s) 403, 407, 573
BstDEI CTNAG 1 cut(s) 579
BstDSI CCRYGG 1 cut(s) 861
BstFNI CGCG 1 cut(s) 401
BstHHI GCGC 1 cut(s) 401
BstKTI GATC 4 cut(s) 106, 331, 714, 781
BstMBI GATC 4 cut(s) 103, 328, 711, 778
BstMWI GCNNNNNNNGC 6 cut(s) 393, 402, 513, 581, 972, 1043
BstNI CCWGG 2 cut(s) 348, 728
BstNSI RCATGY 2 cut(s) 966, 1034
BstPAI GACNNNNGTC 1 cut(s) 126
BstSCI CCNGG 5 cut(s) 112, 123, 124, 346, 726
BstSLI GKGCMC 1 cut(s) 291
BstUI CGCG 1 cut(s) 401
BstV1I GCAGC 6 cut(s) 491, 494, 562, 953, 956, 1021
BstV2I GAAGAC 1 cut(s) 198
BstX2I RGATCY 1 cut(s) 711
BstYI RGATCY 1 cut(s) 711
BsuRI GGCC 3 cut(s) 26, 141, 165
BtgI CCRYGG 1 cut(s) 861
BtsIMutI CAGTG 1 cut(s) 692
BveI ACCTGC 2 cut(s) 186, 1055
Cac8I GCNNGC 3 cut(s) 403, 407, 573
CaiI CAGNNNCTG 3 cut(s) 440, 947, 1070
CfoI GCGC 1 cut(s) 401
Cfr13I GGNCC 3 cut(s) 128, 140, 857
Cfr9I CCCGGG 1 cut(s) 124
CseI GACGC 3 cut(s) 87, 260, 485
Csp6I GTAC 3 cut(s) 363, 426, 807
CviAII CATG 5 cut(s) 158, 212, 862, 963, 1031
CviQI GTAC 3 cut(s) 363, 426, 807
DdeI CTNAG 1 cut(s) 579
DpnI GATC 4 cut(s) 105, 330, 713, 780
DpnII GATC 4 cut(s) 103, 328, 711, 778
DrdI GACNNNNNNGTC 2 cut(s) 737, 877
DseDI GACNNNNNNGTC 2 cut(s) 737, 877
EaeI YGGCCR 1 cut(s) 24
Eco130I CCWWGG 1 cut(s) 861
Eco47I GGWCC 2 cut(s) 128, 857
Eco88I CYCGRG 1 cut(s) 124
EcoO109I RGGNCCY 1 cut(s) 128
EcoRI GAATTC 1 cut(s) 613
EcoRII CCWGG 2 cut(s) 346, 726
EcoT14I CCWWGG 1 cut(s) 861
EcoT22I ATGCAT 1 cut(s) 597
ErhI CCWWGG 1 cut(s) 861
FaeI CATG 5 cut(s) 161, 215, 865, 966, 1034
FalI AAGNNNNNCTT 2 cut(s) 663, 695
FaqI GGGAC 2 cut(s) 114, 843
FatI CATG 5 cut(s) 157, 211, 861, 962, 1030
FauI CCCGC 3 cut(s) 394, 398, 631
FauNDI CATATG 1 cut(s) 247
FblI GTMKAC 1 cut(s) 120
Fnu4HI GCNGC 7 cut(s) 397, 480, 483, 576, 942, 945, 1035
Fsp4HI GCNGC 7 cut(s) 397, 480, 483, 576, 942, 945, 1035
FspBI CTAG 1 cut(s) 384
GlaI GCGC 1 cut(s) 400
GluI GCNGC 7 cut(s) 397, 480, 483, 576, 942, 945, 1035
GsaI CCCAGC 3 cut(s) 564, 609, 951
HaeIII GGCC 3 cut(s) 26, 141, 165
HapII CCGG 4 cut(s) 23, 92, 114, 125
HgaI GACGC 3 cut(s) 87, 260, 485
HhaI GCGC 1 cut(s) 401
Hin1I GRCGYC 1 cut(s) 732
Hin1II CATG 5 cut(s) 161, 215, 865, 966, 1034
Hin6I GCGC 1 cut(s) 399
HinP1I GCGC 1 cut(s) 399
HincII GTYRAC 2 cut(s) 121, 475
HindII GTYRAC 2 cut(s) 121, 475
HindIII AAGCTT 1 cut(s) 677
HinfI GANTC 1 cut(s) 117
HpaII CCGG 4 cut(s) 23, 92, 114, 125
HphI GGTGA 5 cut(s) 25, 98, 167, 200, 455
Hpy166II GTNNAC 3 cut(s) 121, 475, 544
Hpy188I TCNGA 3 cut(s) 103, 768, 1026
Hpy8I GTNNAC 3 cut(s) 121, 475, 544
HpyAV CCTTC 8 cut(s) 67, 216, 459, 463, 594, 750, 900, 916
HpyCH4III ACNGT 1 cut(s) 719
HpyCH4IV ACGT 3 cut(s) 353, 540, 732
HpyF10VI GCNNNNNNNGC 6 cut(s) 393, 402, 513, 581, 972, 1043
HpyF3I CTNAG 1 cut(s) 579
HpySE526I ACGT 3 cut(s) 353, 540, 732
Hsp92I GRCGYC 1 cut(s) 732
Hsp92II CATG 5 cut(s) 161, 215, 865, 966, 1034
HspAI GCGC 1 cut(s) 399
KflI GGGWCCC 1 cut(s) 128
Kzo9I GATC 4 cut(s) 103, 328, 711, 778
LmnI GCTCC 4 cut(s) 208, 625, 892, 938
Lsp1109I GCAGC 6 cut(s) 491, 494, 562, 953, 956, 1021
LweI GCATC 1 cut(s) 604
MaeI CTAG 1 cut(s) 384
MaeII ACGT 3 cut(s) 353, 540, 732
MaeIII GTNAC 3 cut(s) 173, 520, 719
MalI GATC 4 cut(s) 105, 330, 713, 780
MbiI CCGCTC 1 cut(s) 396
MboI GATC 4 cut(s) 103, 328, 711, 778
MboII GAAGA 5 cut(s) 3, 203, 511, 667, 808
MflI RGATCY 1 cut(s) 711
MhlI GDGCHC 1 cut(s) 291
MluCI AATT 7 cut(s) 7, 74, 133, 301, 613, 701, 852
MlyI GAGTC 1 cut(s) 126
MmeI TCCRAC 1 cut(s) 733
MnlI CCTC 7 cut(s) 99, 176, 439, 762, 892, 926, 929
Mph1103I ATGCAT 1 cut(s) 597
MseI TTAA 1 cut(s) 590
MspA1I CMGCKG 2 cut(s) 485, 947
MspI CCGG 4 cut(s) 23, 92, 114, 125
MspR9I CCNGG 5 cut(s) 114, 125, 126, 348, 728
MvaI CCWGG 2 cut(s) 348, 728
MvnI CGCG 1 cut(s) 401
MwoI GCNNNNNNNGC 6 cut(s) 393, 402, 513, 581, 972, 1043
NciI CCSGG 3 cut(s) 114, 125, 126
NcoI CCATGG 1 cut(s) 861
NdeI CATATG 1 cut(s) 247
NdeII GATC 4 cut(s) 103, 328, 711, 778
NlaIII CATG 5 cut(s) 161, 215, 865, 966, 1034
NlaIV GGNNCC 4 cut(s) 129, 130, 859, 888
NmuCI GTSAC 2 cut(s) 173, 520
NsiI ATGCAT 1 cut(s) 597
NspI RCATGY 2 cut(s) 966, 1034
PaqCI CACCTGC 1 cut(s) 186
PflMI CCANNNNNTGG 1 cut(s) 854
PfoI TCCNGGA 1 cut(s) 346
PkrI GCNGC 7 cut(s) 398, 481, 484, 577, 943, 946, 1036
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
PpuMI RGGWCCY 1 cut(s) 128
PshAI GACNNNNGTC 1 cut(s) 126
PsiI TTATAA 1 cut(s) 929
Psp5II RGGWCCY 1 cut(s) 128
Psp6I CCWGG 2 cut(s) 346, 726
PspFI CCCAGC 3 cut(s) 560, 605, 947
PspGI CCWGG 2 cut(s) 346, 726
PspN4I GGNNCC 4 cut(s) 129, 130, 859, 888
PspPI GGNCC 3 cut(s) 128, 140, 857
PspPPI RGGWCCY 1 cut(s) 128
PstNI CAGNNNCTG 3 cut(s) 440, 947, 1070
PsuI RGATCY 1 cut(s) 711
PvuII CAGCTG 1 cut(s) 947
RsaI GTAC 3 cut(s) 364, 427, 808
RsaNI GTAC 3 cut(s) 363, 426, 807
SalI GTCGAC 1 cut(s) 119
SaqAI TTAA 1 cut(s) 590
SatI GCNGC 7 cut(s) 397, 480, 483, 576, 942, 945, 1035
Sau3AI GATC 4 cut(s) 103, 328, 711, 778
Sau96I GGNCC 3 cut(s) 128, 140, 857
SchI GAGTC 1 cut(s) 126
ScrFI CCNGG 5 cut(s) 114, 125, 126, 348, 728
SduI GDGCHC 1 cut(s) 291
SfaNI GCATC 1 cut(s) 604
SinI GGWCC 2 cut(s) 128, 857
SmaI CCCGGG 1 cut(s) 126
Sse9I AATT 7 cut(s) 7, 74, 133, 301, 613, 701, 852
SsiI CCGC 5 cut(s) 396, 401, 405, 485, 624
SspI AATATT 1 cut(s) 970
SspMI CTAG 1 cut(s) 384
StyD4I CCNGG 5 cut(s) 112, 123, 124, 346, 726
StyI CCWWGG 1 cut(s) 861
TaaI ACNGT 1 cut(s) 719
TaiI ACGT 3 cut(s) 356, 543, 735
TaqI TCGA 3 cut(s) 60, 120, 598
TasI AATT 7 cut(s) 7, 74, 133, 301, 613, 701, 852
TatI WGTACW 1 cut(s) 425
TauI GCSGC 1 cut(s) 399
Tru1I TTAA 1 cut(s) 590
Tru9I TTAA 1 cut(s) 590
TscAI CASTG 1 cut(s) 692
TseFI GTSAC 2 cut(s) 173, 520
TseI GCWGC 6 cut(s) 479, 482, 575, 941, 944, 1034
Tsp45I GTSAC 2 cut(s) 173, 520
TspDTI ATGAA 2 cut(s) 926, 1001
TspMI CCCGGG 1 cut(s) 124
TspRI CASTG 1 cut(s) 692
Van91I CCANNNNNTGG 1 cut(s) 854
VpaK11BI GGWCC 2 cut(s) 128, 857
XapI RAATTY 3 cut(s) 301, 613, 701
XceI RCATGY 2 cut(s) 966, 1034
XmaI CCCGGG 1 cut(s) 124
XmiI GTMKAC 1 cut(s) 120
XspI CTAG 1 cut(s) 384
ZraI GACGTC 1 cut(s) 733
Zsp2I ATGCAT 1 cut(s) 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.