Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0010569

Physical Location & Seq

Genomic Coordinates Forward (+)

65129282 .. 65130882

Gene Structure 1601 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005115

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGTTCAATTCTTCACAATATCCCGCCACTTTCACCTATCAATATCCCAACACCACCGTCGACCCCAACACTCAATTCTCCTATTTTCCTCCGGTAGCGTCTGATCACCCACCCGGAGTCGACCCGCGTCCCAATTCAGGCCCATACCCATTGACCCATGTTGGCCTCCAAAGTCACCTGCCATTTGGTGAAGACCCAAATGCTCCTTCACATGGTTGGCTTGTCAATCAAGCTGTCCCCATCTCATATGACGCTTCAATCAAATCTTTGAATGAGAGCTTGTTAGTGCCCACAAATGCAAATTCTTCGTGGAATAGCAGCTGGACAGATCAACCTAATGCGTTTCTAGGAACGTCCAATGGTATAGACAATGCCAGTCTGCCTAGTGAAATGAGCGGCGCGGGCGGGCAAGTGATGTGTGGGAGTACAAGTGCAGTTGCTGGTGAGGAGTTGGGAACAAAGAGAAGGAAGGTTGACGCAGCGGTTGGTTTTGTGAAGATTTGCGAAATGTGCAATGTCACTACCCATAGCCCAGACGTTTACAAGAAGCATTTGGCTGGGAAAAGGCACGCTGCTCAGGCTAACTTAATGCATCGAAGGGGGGCTGGGTTGAATTCTGCTCCCGCAATCCAATCTAAGTCCAATGGCATTTGGAAGAAAGACCCAAATAAAATCAAGCTTGTTCAGTGTGTATGGTGTGAGTTTTGCAAGATCTACTGTAACAGCCAGGACGTCTATGTCAAACACATAGCTGGAAGGAAACATCAGAAGAACTTGGATCAACTCGAAAAGTTGAAGAACAAAGGTACTGCCCTGACCACAAATGTTCCATCAGGTGCAAGAAATCCACAAATTGGTCCCATGGAAAAGAATTCCCAGTCAAAGGCTCCTTCACAAGAGGACTTGGAGGCGAAAAAGCAGAAGGTTATAAGAGGAGGAGCAGCAGCTGGGGAAGTTAGAACGTGCAATATTTGCAATGTAGTGTGCAACAGCCAGATAGCTTTCAGTTTTCATCTTTCTGGTCAGAAGCATGCTGCAATGGTGGCGAAACAAGCATCAGAAGCAGGTTCTGGTAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-met

Protein Analysis

360

Amino Acids

38.63

Weight (kDa)

9.06

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-met	PF12874	167 - 190	1e-05	Zinc-finger of C2H2 type
zf-met	PF12874	232 - 255	4.1e-06	Zinc-finger of C2H2 type

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010569)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14276 FvH4_5g14276
malus_domestica	MD14G1208900.v1.1
prunus_persica	Prupe.2G102500_v2.0.a1 Prupe.5G201200_v2.0.a1 Prupe.5G201200_v2.0.a1 Prupe.5G201200_v2.0.a1 Prupe.5G201200_v2.0.a1
pyrus_communis	pycom14g17260 pycom14g17270
rosa_chinensis	RchiOBHm_Chr7g0182621
rosa_laevigata	RLG00000005115
rosa_multiflora	Rmu_sc0005811.1_g000011 Rmu_sc0013953.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271120
rosa_rugosa	Rorug06G0448600
rosa_samantha	Rh7AG052500 Rh7BG051700 Rh7CG053400 Rh7DG051700
rosa_wichuraiana	Rw7G004260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	929
AarI	CACCTGC	1 cut(s)	186
AasI	GACNNNNNNGTC	1 cut(s)	737
AatII	GACGTC	1 cut(s)	735
Acc36I	ACCTGC	2 cut(s)	186, 1055
AccB7I	CCANNNNNTGG	1 cut(s)	854
AccBSI	CCGCTC	1 cut(s)	396
AccI	GTMKAC	2 cut(s)	60, 120
AccII	CGCG	2 cut(s)	127, 401
AciI	CCGC	7 cut(s)	24, 125, 396, 401, 405, 482, 624
AclWI	GGATC	1 cut(s)	786
AcsI	RAATTY	3 cut(s)	301, 613, 871
AcyI	GRCGYC	1 cut(s)	732
AfaI	GTAC	2 cut(s)	427, 808
AfiI	CCNNNNNNNGG	4 cut(s)	137, 212, 854, 883
AgsI	TTSAA	5 cut(s)	7, 258, 271, 613, 796
AjnI	CCWGG	1 cut(s)	726
AjuI	GAANNNNNNNTTGG	4 cut(s)	59, 91, 190, 222
AluBI	AGCT	7 cut(s)	233, 279, 321, 679, 752, 947, 1001
AluI	AGCT	7 cut(s)	233, 279, 321, 679, 752, 947, 1001
AlwI	GGATC	1 cut(s)	786
AlwNI	CAGNNNCTG	3 cut(s)	440, 947, 1070
AoxI	GGCC	2 cut(s)	139, 163
ApeKI	GCWGC	6 cut(s)	318, 479, 572, 941, 944, 1034
ApoI	RAATTY	3 cut(s)	301, 613, 871
AspLEI	GCGC	1 cut(s)	401
AspS9I	GGNCC	2 cut(s)	140, 857
AsuC2I	CCSGG	1 cut(s)	114
AsuHPI	GGTGA	5 cut(s)	25, 98, 167, 200, 455
AvaII	GGWCC	1 cut(s)	857
BaeGI	GKGCMC	1 cut(s)	291
BbsI	GAAGAC	1 cut(s)	198
BbvI	GCAGC	6 cut(s)	330, 491, 559, 953, 956, 1021
BccI	CCATC	2 cut(s)	248, 838
BcgI	CGANNNNNNTGC	2 cut(s)	288, 322
BciT130I	CCWGG	1 cut(s)	728
BclI	TGATCA	1 cut(s)	103
BcnI	CCSGG	1 cut(s)	114
BfaI	CTAG	2 cut(s)	347, 384
BfuAI	ACCTGC	2 cut(s)	186, 1055
BglII	AGATCT	1 cut(s)	711
BisI	GCNGC	7 cut(s)	319, 397, 480, 573, 942, 945, 1035
BlsI	GCNGC	7 cut(s)	320, 398, 481, 574, 943, 946, 1036
Bme1390I	CCNGG	2 cut(s)	114, 728
Bme18I	GGWCC	1 cut(s)	857
BmgT120I	GGNCC	2 cut(s)	140, 857
BmiI	GGNNCC	2 cut(s)	859, 888
BmrFI	CCNGG	2 cut(s)	114, 728
BmrI	ACTGGG	1 cut(s)	871
BmsI	GCATC	2 cut(s)	601, 1064
BmuI	ACTGGG	1 cut(s)	871
BoxI	GACNNNNGTC	1 cut(s)	126
BpiI	GAAGAC	1 cut(s)	198
Bpu10I	CCTNAGC	1 cut(s)	576
BpuMI	CCSGG	1 cut(s)	114
BsaHI	GRCGYC	1 cut(s)	732
BsaJI	CCNNGG	1 cut(s)	861
BsaWI	WCCGGW	1 cut(s)	91
BsaXI	ACNNNNNCTCC	2 cut(s)	415, 445
Bsc4I	CCNNNNNNNGG	4 cut(s)	137, 212, 854, 883
Bse1I	ACTGG	2 cut(s)	375, 877
Bse3DI	GCAATG	3 cut(s)	520, 982, 1044
BseBI	CCWGG	1 cut(s)	728
BseDI	CCNNGG	1 cut(s)	861
BseLI	CCNNNNNNNGG	4 cut(s)	137, 212, 854, 883
BseMI	GCAATG	3 cut(s)	520, 982, 1044
BseMII	CTCAG	1 cut(s)	590
BseNI	ACTGG	2 cut(s)	375, 877
BseRI	GAGGAG	3 cut(s)	461, 948, 951
BseSI	GKGCMC	1 cut(s)	291
BseXI	GCAGC	6 cut(s)	330, 491, 559, 953, 956, 1021
BseYI	CCCAGC	3 cut(s)	557, 605, 947
BsgI	GTGCAG	1 cut(s)	453
Bsh1236I	CGCG	2 cut(s)	127, 401
BshFI	GGCC	2 cut(s)	141, 165
BsiSI	CCGG	2 cut(s)	92, 114
BslFI	GGGAC	3 cut(s)	114, 221, 843
BslI	CCNNNNNNNGG	4 cut(s)	137, 212, 854, 883
BsmFI	GGGAC	3 cut(s)	114, 221, 843
BsnI	GGCC	2 cut(s)	141, 165
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	4 cut(s)	103, 328, 711, 778
Bsp19I	CCATGG	1 cut(s)	861
BspACI	CCGC	7 cut(s)	24, 125, 396, 401, 405, 482, 624
BspANI	GGCC	2 cut(s)	141, 165
BspCNI	CTCAG	1 cut(s)	589
BspFNI	CGCG	2 cut(s)	127, 401
BspLI	GGNNCC	2 cut(s)	859, 888
BspMI	ACCTGC	2 cut(s)	186, 1055
BspPI	GGATC	1 cut(s)	786
BsrBI	CCGCTC	1 cut(s)	396
BsrDI	GCAATG	3 cut(s)	520, 982, 1044
BsrI	ACTGG	2 cut(s)	375, 877
BssECI	CCNNGG	1 cut(s)	861
BssMI	GATC	4 cut(s)	103, 328, 711, 778
BssNI	GRCGYC	1 cut(s)	732
BssT1I	CCWWGG	1 cut(s)	861
Bst2UI	CCWGG	1 cut(s)	728
Bst4CI	ACNGT	2 cut(s)	58, 719
BstACI	GRCGYC	1 cut(s)	732
BstAPI	GCANNNNNTGC	1 cut(s)	972
BstC8I	GCNNGC	4 cut(s)	403, 407, 570, 1032
BstDEI	CTNAG	2 cut(s)	576, 636
BstDSI	CCRYGG	1 cut(s)	861
BstFNI	CGCG	2 cut(s)	127, 401
BstHHI	GCGC	1 cut(s)	401
BstKTI	GATC	4 cut(s)	106, 331, 714, 781
BstMBI	GATC	4 cut(s)	103, 328, 711, 778
BstMWI	GCNNNNNNNGC	7 cut(s)	402, 510, 578, 972, 1043, 1052, 1061
BstNI	CCWGG	1 cut(s)	728
BstNSI	RCATGY	1 cut(s)	1034
BstPAI	GACNNNNGTC	1 cut(s)	126
BstSCI	CCNGG	2 cut(s)	112, 726
BstSLI	GKGCMC	1 cut(s)	291
BstUI	CGCG	2 cut(s)	127, 401
BstV1I	GCAGC	6 cut(s)	330, 491, 559, 953, 956, 1021
BstV2I	GAAGAC	1 cut(s)	198
BstX2I	RGATCY	1 cut(s)	711
BstYI	RGATCY	1 cut(s)	711
BsuRI	GGCC	2 cut(s)	141, 165
BtgI	CCRYGG	1 cut(s)	861
BtsIMutI	CAGTG	1 cut(s)	692
BveI	ACCTGC	2 cut(s)	186, 1055
Cac8I	GCNNGC	4 cut(s)	403, 407, 570, 1032
CaiI	CAGNNNCTG	3 cut(s)	440, 947, 1070
CfoI	GCGC	1 cut(s)	401
Cfr13I	GGNCC	2 cut(s)	140, 857
CseI	GACGC	4 cut(s)	87, 116, 260, 485
Csp6I	GTAC	2 cut(s)	426, 807
CviAII	CATG	4 cut(s)	158, 212, 862, 1031
CviQI	GTAC	2 cut(s)	426, 807
DdeI	CTNAG	2 cut(s)	576, 636
DpnI	GATC	4 cut(s)	105, 330, 713, 780
DpnII	GATC	4 cut(s)	103, 328, 711, 778
DrdI	GACNNNNNNGTC	1 cut(s)	737
DseDI	GACNNNNNNGTC	1 cut(s)	737
Eco130I	CCWWGG	1 cut(s)	861
Eco47I	GGWCC	1 cut(s)	857
EcoRI	GAATTC	2 cut(s)	613, 871
EcoRII	CCWGG	1 cut(s)	726
EcoT14I	CCWWGG	1 cut(s)	861
EcoT22I	ATGCAT	1 cut(s)	594
ErhI	CCWWGG	1 cut(s)	861
FaeI	CATG	4 cut(s)	161, 215, 865, 1034
FaqI	GGGAC	3 cut(s)	114, 221, 843
FatI	CATG	4 cut(s)	157, 211, 861, 1030
FauI	CCCGC	5 cut(s)	31, 132, 394, 398, 631
FauNDI	CATATG	1 cut(s)	247
FbaI	TGATCA	1 cut(s)	103
FblI	GTMKAC	2 cut(s)	60, 120
Fnu4HI	GCNGC	7 cut(s)	319, 397, 480, 573, 942, 945, 1035
Fsp4HI	GCNGC	7 cut(s)	319, 397, 480, 573, 942, 945, 1035
FspBI	CTAG	2 cut(s)	347, 384
GlaI	GCGC	1 cut(s)	400
GluI	GCNGC	7 cut(s)	319, 397, 480, 573, 942, 945, 1035
GsaI	CCCAGC	3 cut(s)	561, 609, 951
HaeIII	GGCC	2 cut(s)	141, 165
HapII	CCGG	2 cut(s)	92, 114
HgaI	GACGC	4 cut(s)	87, 116, 260, 485
HhaI	GCGC	1 cut(s)	401
Hin1I	GRCGYC	1 cut(s)	732
Hin1II	CATG	4 cut(s)	161, 215, 865, 1034
Hin6I	GCGC	1 cut(s)	399
HinP1I	GCGC	1 cut(s)	399
HincII	GTYRAC	3 cut(s)	61, 121, 475
HindII	GTYRAC	3 cut(s)	61, 121, 475
HindIII	AAGCTT	1 cut(s)	677
HinfI	GANTC	1 cut(s)	117
HpaII	CCGG	2 cut(s)	92, 114
HphI	GGTGA	5 cut(s)	25, 98, 167, 200, 455
Hpy166II	GTNNAC	4 cut(s)	61, 121, 475, 541
Hpy188I	TCNGA	4 cut(s)	103, 768, 1026, 1060
Hpy8I	GTNNAC	4 cut(s)	61, 121, 475, 541
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	7 cut(s)	216, 459, 463, 591, 750, 900, 916
HpyCH4III	ACNGT	2 cut(s)	58, 719
HpyCH4IV	ACGT	4 cut(s)	353, 537, 732, 962
HpyF10VI	GCNNNNNNNGC	7 cut(s)	402, 510, 578, 972, 1043, 1052, 1061
HpyF3I	CTNAG	2 cut(s)	576, 636
HpySE526I	ACGT	4 cut(s)	353, 537, 732, 962
Hsp92I	GRCGYC	1 cut(s)	732
Hsp92II	CATG	4 cut(s)	161, 215, 865, 1034
HspAI	GCGC	1 cut(s)	399
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	4 cut(s)	103, 328, 711, 778
LmnI	GCTCC	4 cut(s)	208, 625, 892, 938
Lsp1109I	GCAGC	6 cut(s)	330, 491, 559, 953, 956, 1021
LweI	GCATC	2 cut(s)	601, 1064
MaeI	CTAG	2 cut(s)	347, 384
MaeII	ACGT	4 cut(s)	353, 537, 732, 962
MaeIII	GTNAC	4 cut(s)	173, 517, 719, 1073
MalI	GATC	4 cut(s)	105, 330, 713, 780
MbiI	CCGCTC	1 cut(s)	396
MboI	GATC	4 cut(s)	103, 328, 711, 778
MboII	GAAGA	7 cut(s)	3, 203, 297, 508, 667, 781, 808
MflI	RGATCY	1 cut(s)	711
MhlI	GDGCHC	1 cut(s)	291
MluCI	AATT	7 cut(s)	7, 74, 133, 301, 613, 852, 871
MlyI	GAGTC	1 cut(s)	126
MnlI	CCTC	7 cut(s)	99, 176, 439, 892, 901, 926, 929
Mph1103I	ATGCAT	1 cut(s)	594
MseI	TTAA	1 cut(s)	587
MspA1I	CMGCKG	3 cut(s)	321, 482, 947
MspI	CCGG	2 cut(s)	92, 114
MspR9I	CCNGG	2 cut(s)	114, 728
MvaI	CCWGG	1 cut(s)	728
MvnI	CGCG	2 cut(s)	127, 401
MwoI	GCNNNNNNNGC	7 cut(s)	402, 510, 578, 972, 1043, 1052, 1061
NciI	CCSGG	1 cut(s)	114
NcoI	CCATGG	1 cut(s)	861
NdeI	CATATG	1 cut(s)	247
NdeII	GATC	4 cut(s)	103, 328, 711, 778
NlaIII	CATG	4 cut(s)	161, 215, 865, 1034
NlaIV	GGNNCC	2 cut(s)	859, 888
NmuCI	GTSAC	2 cut(s)	173, 517
NsiI	ATGCAT	1 cut(s)	594
NspI	RCATGY	1 cut(s)	1034
PaeI	GCATGC	1 cut(s)	1034
PaqCI	CACCTGC	1 cut(s)	186
PflMI	CCANNNNNTGG	1 cut(s)	854
PkrI	GCNGC	7 cut(s)	320, 398, 481, 574, 943, 946, 1036
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
PshAI	GACNNNNGTC	1 cut(s)	126
PsiI	TTATAA	1 cut(s)	929
Psp6I	CCWGG	1 cut(s)	726
PspFI	CCCAGC	3 cut(s)	557, 605, 947
PspGI	CCWGG	1 cut(s)	726
PspN4I	GGNNCC	2 cut(s)	859, 888
PspPI	GGNCC	2 cut(s)	140, 857
PstNI	CAGNNNCTG	3 cut(s)	440, 947, 1070
PsuI	RGATCY	1 cut(s)	711
PvuII	CAGCTG	2 cut(s)	321, 947
RsaI	GTAC	2 cut(s)	427, 808
RsaNI	GTAC	2 cut(s)	426, 807
SalI	GTCGAC	2 cut(s)	59, 119
SaqAI	TTAA	1 cut(s)	587
SatI	GCNGC	7 cut(s)	319, 397, 480, 573, 942, 945, 1035
Sau3AI	GATC	4 cut(s)	103, 328, 711, 778
Sau96I	GGNCC	2 cut(s)	140, 857
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	2 cut(s)	114, 728
SduI	GDGCHC	1 cut(s)	291
SfaNI	GCATC	2 cut(s)	601, 1064
SinI	GGWCC	1 cut(s)	857
SphI	GCATGC	1 cut(s)	1034
Sse9I	AATT	7 cut(s)	7, 74, 133, 301, 613, 852, 871
SsiI	CCGC	7 cut(s)	24, 125, 396, 401, 405, 482, 624
SspI	AATATT	1 cut(s)	970
SspMI	CTAG	2 cut(s)	347, 384
StyD4I	CCNGG	2 cut(s)	112, 726
StyI	CCWWGG	1 cut(s)	861
TaaI	ACNGT	2 cut(s)	58, 719
TaiI	ACGT	4 cut(s)	356, 540, 735, 965
TaqI	TCGA	4 cut(s)	60, 120, 595, 786
TasI	AATT	7 cut(s)	7, 74, 133, 301, 613, 852, 871
TatI	WGTACW	1 cut(s)	425
TauI	GCSGC	1 cut(s)	399
Tru1I	TTAA	1 cut(s)	587
Tru9I	TTAA	1 cut(s)	587
TscAI	CASTG	1 cut(s)	692
TseFI	GTSAC	2 cut(s)	173, 517
TseI	GCWGC	6 cut(s)	318, 479, 572, 941, 944, 1034
Tsp45I	GTSAC	2 cut(s)	173, 517
TspDTI	ATGAA	1 cut(s)	1001
TspRI	CASTG	1 cut(s)	692
Van91I	CCANNNNNTGG	1 cut(s)	854
VpaK11BI	GGWCC	1 cut(s)	857
XapI	RAATTY	3 cut(s)	301, 613, 871
XceI	RCATGY	1 cut(s)	1034
XmiI	GTMKAC	2 cut(s)	60, 120
XspI	CTAG	2 cut(s)	347, 384
ZraI	GACGTC	1 cut(s)	733
Zsp2I	ATGCAT	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.