Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0010569

Physical Location & Seq

Genomic Coordinates Reverse (-)

3383327 .. 3385080

Gene Structure 1754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG051700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGTTCAATTCTTCACAATATCCCGCCAATTTCACATATCAATATCCCAACACCACCTTCGACCCCAACACTCAATTCTCCTATTTTCCTCCGCTAGCGTCCGATCACCCACCCGGAGTCGACCCGGGTCCCAATTCAGGCCCATACCCATTGACCCATGTTGGCCTCCAAAGTCACCTGCCATTTGGTGAATACCCAAATGCTCCTTCACATGGTTGGCTTGTCAATCAAGCTGTCCCCATCTCATATGACGCTTCAATCAAATCTTTGAATGAGAGCTTGTTAGTGCCCACAAATGCAAATTCTTCGTGGAATAGCAGTTGGACAGATCAACCTAATGCGTTTCCAGGAACGTCCAGTGGTATAGACAATGCCAGTCTGCCTAGCGAAATGAGCGGCGCGGGCGGGCAAGTGATGTATGGGAGTACAAGTGCAGTTGCTGGTGAGGAGTTGGGAACAAAGAGAAGGAAGGTTGACGCAGCGGTTGGTTTTGTGAAGACTTGCGAAATGTGCAATGTCACTACCCATAGCCCAGACGTTTACAAGAAGCATTTGGCTGGGAAAAGGCACGCTGCTCAGGCTAACTTAATGCATCGAAGGGCTGGGTTGAATTCTGCTCCCGCAATCCAATCCAAGTCCAATGGCATTTGGAAGAAAGACCCAGATAAAGTCAAGCTTGTTCAGTGTGTATGGTGTGAATTTTGCAAGATCTACTGTAACAGCCAGGACGTCTATGTCAAACACATAGCTGGAAGGAAACATCAGAGGAACTTGGATCAACTCGAAAAGTTGAAGAACAAAGGTACTGCCCCGACCACAAATGTTCCATCAGGTGCAAGAAATCCACAAATTGGTCCCATGGAAAAGACTTCCCAGTCAAAGGCTCCTTCACAAGAGGATTTGGAGACGAAAAAGCAGAAGGTTATAAGAGGAGGAGCAGCAGCTGGGGAAGTTAGAACGTGCAATATTTGCAATGTAGTGTGCAACAGCCAGATAGCTTTCAGTTTTCATCTTTCTGGTCAGAAGCATGCTGCAATGGTGGCGAAACAAGCATTAGAAGCAGGTTCTGGTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-met

Protein Analysis

358

Amino Acids

38.63

Weight (kDa)

9.02

Isoelectric Point (pI)

41.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-met	PF12874	167 - 190	6.2e-06	Zinc-finger of C2H2 type
zf-met	PF12874	231 - 254	4.1e-06	Zinc-finger of C2H2 type

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010569)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14276 FvH4_5g14276
malus_domestica	MD14G1208900.v1.1
prunus_persica	Prupe.2G102500_v2.0.a1 Prupe.5G201200_v2.0.a1 Prupe.5G201200_v2.0.a1 Prupe.5G201200_v2.0.a1 Prupe.5G201200_v2.0.a1
pyrus_communis	pycom14g17260 pycom14g17270
rosa_chinensis	RchiOBHm_Chr7g0182621
rosa_laevigata	RLG00000005115
rosa_multiflora	Rmu_sc0005811.1_g000011 Rmu_sc0013953.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271120
rosa_rugosa	Rorug06G0448600
rosa_samantha	Rh7AG052500 Rh7BG051700 Rh7CG053400 Rh7DG051700
rosa_wichuraiana	Rw7G004260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	926
AarI	CACCTGC	1 cut(s)	186
AasI	GACNNNNNNGTC	2 cut(s)	734, 874
AatII	GACGTC	1 cut(s)	732
Acc36I	ACCTGC	2 cut(s)	186, 1052
AccB7I	CCANNNNNTGG	1 cut(s)	851
AccBSI	CCGCTC	1 cut(s)	396
AccI	GTMKAC	1 cut(s)	120
AccII	CGCG	1 cut(s)	401
AciI	CCGC	7 cut(s)	24, 92, 396, 401, 405, 482, 621
AclWI	GGATC	1 cut(s)	783
AcsI	RAATTY	3 cut(s)	301, 610, 698
AcyI	GRCGYC	1 cut(s)	729
AfaI	GTAC	2 cut(s)	427, 805
AfiI	CCNNNNNNNGG	4 cut(s)	137, 212, 851, 880
AgsI	TTSAA	5 cut(s)	7, 258, 271, 610, 793
AjnI	CCWGG	2 cut(s)	346, 723
AjuI	GAANNNNNNNTTGG	6 cut(s)	41, 59, 73, 91, 190, 222
AluBI	AGCT	6 cut(s)	233, 279, 676, 749, 944, 998
AluI	AGCT	6 cut(s)	233, 279, 676, 749, 944, 998
Alw26I	GTCTC	1 cut(s)	899
AlwI	GGATC	1 cut(s)	783
AlwNI	CAGNNNCTG	3 cut(s)	440, 944, 1067
Ama87I	CYCGRG	1 cut(s)	124
AoxI	GGCC	2 cut(s)	139, 163
ApeKI	GCWGC	5 cut(s)	479, 572, 938, 941, 1031
ApoI	RAATTY	3 cut(s)	301, 610, 698
AspLEI	GCGC	1 cut(s)	401
AspS9I	GGNCC	3 cut(s)	128, 140, 854
AsuC2I	CCSGG	3 cut(s)	114, 125, 126
AsuHPI	GGTGA	4 cut(s)	98, 167, 200, 455
AsuNHI	GCTAGC	1 cut(s)	94
AvaI	CYCGRG	1 cut(s)	124
AvaII	GGWCC	2 cut(s)	128, 854
BaeGI	GKGCMC	1 cut(s)	291
BbsI	GAAGAC	1 cut(s)	503
BbvI	GCAGC	5 cut(s)	491, 559, 950, 953, 1018
BccI	CCATC	2 cut(s)	248, 835
BcgI	CGANNNNNNTGC	2 cut(s)	288, 322
BciT130I	CCWGG	2 cut(s)	348, 725
BcnI	CCSGG	3 cut(s)	114, 125, 126
BcoDI	GTCTC	1 cut(s)	899
BfaI	CTAG	2 cut(s)	95, 384
BfuAI	ACCTGC	2 cut(s)	186, 1052
BglII	AGATCT	1 cut(s)	708
BisI	GCNGC	6 cut(s)	397, 480, 573, 939, 942, 1032
BlsI	GCNGC	6 cut(s)	398, 481, 574, 940, 943, 1033
Bme1390I	CCNGG	5 cut(s)	114, 125, 126, 348, 725
Bme18I	GGWCC	2 cut(s)	128, 854
BmeT110I	CYCGRG	1 cut(s)	124
BmgT120I	GGNCC	3 cut(s)	128, 140, 854
BmiI	GGNNCC	4 cut(s)	129, 130, 856, 885
BmrFI	CCNGG	5 cut(s)	114, 125, 126, 348, 725
BmrI	ACTGGG	1 cut(s)	868
BmsI	GCATC	1 cut(s)	601
BmtI	GCTAGC	1 cut(s)	98
BmuI	ACTGGG	1 cut(s)	868
BoxI	GACNNNNGTC	1 cut(s)	126
BpiI	GAAGAC	1 cut(s)	503
Bpu10I	CCTNAGC	1 cut(s)	576
BpuMI	CCSGG	3 cut(s)	114, 125, 126
BsaHI	GRCGYC	1 cut(s)	729
BsaJI	CCNNGG	2 cut(s)	124, 858
BsaXI	ACNNNNNCTCC	2 cut(s)	415, 445
Bsc4I	CCNNNNNNNGG	4 cut(s)	137, 212, 851, 880
Bse1I	ACTGG	3 cut(s)	357, 375, 874
Bse3DI	GCAATG	3 cut(s)	520, 979, 1041
BseBI	CCWGG	2 cut(s)	348, 725
BseDI	CCNNGG	2 cut(s)	124, 858
BseLI	CCNNNNNNNGG	4 cut(s)	137, 212, 851, 880
BseMI	GCAATG	3 cut(s)	520, 979, 1041
BseMII	CTCAG	1 cut(s)	590
BseNI	ACTGG	3 cut(s)	357, 375, 874
BseRI	GAGGAG	3 cut(s)	461, 945, 948
BseSI	GKGCMC	1 cut(s)	291
BseXI	GCAGC	5 cut(s)	491, 559, 950, 953, 1018
BseYI	CCCAGC	3 cut(s)	557, 602, 944
BsgI	GTGCAG	1 cut(s)	453
Bsh1236I	CGCG	1 cut(s)	401
BshFI	GGCC	2 cut(s)	141, 165
BsiHKCI	CYCGRG	1 cut(s)	124
BsiSI	CCGG	2 cut(s)	114, 125
BslFI	GGGAC	3 cut(s)	114, 221, 840
BslI	CCNNNNNNNGG	4 cut(s)	137, 212, 851, 880
BsmAI	GTCTC	1 cut(s)	899
BsmBI	CGTCTC	1 cut(s)	899
BsmFI	GGGAC	3 cut(s)	114, 221, 840
BsnI	GGCC	2 cut(s)	141, 165
BsoBI	CYCGRG	1 cut(s)	124
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	4 cut(s)	103, 328, 708, 775
Bsp19I	CCATGG	1 cut(s)	858
BspACI	CCGC	7 cut(s)	24, 92, 396, 401, 405, 482, 621
BspANI	GGCC	2 cut(s)	141, 165
BspCNI	CTCAG	1 cut(s)	589
BspFNI	CGCG	1 cut(s)	401
BspLI	GGNNCC	4 cut(s)	129, 130, 856, 885
BspMI	ACCTGC	2 cut(s)	186, 1052
BspOI	GCTAGC	1 cut(s)	98
BspPI	GGATC	1 cut(s)	783
BsrBI	CCGCTC	1 cut(s)	396
BsrDI	GCAATG	3 cut(s)	520, 979, 1041
BsrI	ACTGG	3 cut(s)	357, 375, 874
BssECI	CCNNGG	2 cut(s)	124, 858
BssMI	GATC	4 cut(s)	103, 328, 708, 775
BssNI	GRCGYC	1 cut(s)	729
BssT1I	CCWWGG	1 cut(s)	858
Bst2UI	CCWGG	2 cut(s)	348, 725
Bst4CI	ACNGT	1 cut(s)	716
BstACI	GRCGYC	1 cut(s)	729
BstAPI	GCANNNNNTGC	1 cut(s)	969
BstC8I	GCNNGC	5 cut(s)	96, 403, 407, 570, 1029
BstDEI	CTNAG	1 cut(s)	576
BstDSI	CCRYGG	1 cut(s)	858
BstFNI	CGCG	1 cut(s)	401
BstHHI	GCGC	1 cut(s)	401
BstKTI	GATC	4 cut(s)	106, 331, 711, 778
BstMAI	GTCTC	1 cut(s)	899
BstMBI	GATC	4 cut(s)	103, 328, 708, 775
BstMWI	GCNNNNNNNGC	8 cut(s)	393, 402, 510, 578, 969, 1040, 1049, 1058
BstNI	CCWGG	2 cut(s)	348, 725
BstNSI	RCATGY	1 cut(s)	1031
BstPAI	GACNNNNGTC	1 cut(s)	126
BstSCI	CCNGG	5 cut(s)	112, 123, 124, 346, 723
BstSLI	GKGCMC	1 cut(s)	291
BstUI	CGCG	1 cut(s)	401
BstV1I	GCAGC	5 cut(s)	491, 559, 950, 953, 1018
BstV2I	GAAGAC	1 cut(s)	503
BstX2I	RGATCY	1 cut(s)	708
BstYI	RGATCY	1 cut(s)	708
BsuRI	GGCC	2 cut(s)	141, 165
BtgI	CCRYGG	1 cut(s)	858
BtsIMutI	CAGTG	2 cut(s)	364, 689
BveI	ACCTGC	2 cut(s)	186, 1052
Cac8I	GCNNGC	5 cut(s)	96, 403, 407, 570, 1029
CaiI	CAGNNNCTG	3 cut(s)	440, 944, 1067
CfoI	GCGC	1 cut(s)	401
Cfr13I	GGNCC	3 cut(s)	128, 140, 854
Cfr9I	CCCGGG	1 cut(s)	124
CseI	GACGC	3 cut(s)	87, 260, 485
Csp6I	GTAC	2 cut(s)	426, 804
CviAII	CATG	4 cut(s)	158, 212, 859, 1028
CviQI	GTAC	2 cut(s)	426, 804
DdeI	CTNAG	1 cut(s)	576
DpnI	GATC	4 cut(s)	105, 330, 710, 777
DpnII	GATC	4 cut(s)	103, 328, 708, 775
DrdI	GACNNNNNNGTC	2 cut(s)	734, 874
DseDI	GACNNNNNNGTC	2 cut(s)	734, 874
Eco130I	CCWWGG	1 cut(s)	858
Eco47I	GGWCC	2 cut(s)	128, 854
Eco88I	CYCGRG	1 cut(s)	124
EcoO109I	RGGNCCY	1 cut(s)	128
EcoRI	GAATTC	1 cut(s)	610
EcoRII	CCWGG	2 cut(s)	346, 723
EcoT14I	CCWWGG	1 cut(s)	858
EcoT22I	ATGCAT	1 cut(s)	594
ErhI	CCWWGG	1 cut(s)	858
Esp3I	CGTCTC	1 cut(s)	899
FaeI	CATG	4 cut(s)	161, 215, 862, 1031
FalI	AAGNNNNNCTT	2 cut(s)	660, 692
FaqI	GGGAC	3 cut(s)	114, 221, 840
FatI	CATG	4 cut(s)	157, 211, 858, 1027
FauI	CCCGC	4 cut(s)	31, 394, 398, 628
FauNDI	CATATG	1 cut(s)	247
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	6 cut(s)	397, 480, 573, 939, 942, 1032
Fsp4HI	GCNGC	6 cut(s)	397, 480, 573, 939, 942, 1032
FspBI	CTAG	2 cut(s)	95, 384
GlaI	GCGC	1 cut(s)	400
GluI	GCNGC	6 cut(s)	397, 480, 573, 939, 942, 1032
GsaI	CCCAGC	3 cut(s)	561, 606, 948
HaeIII	GGCC	2 cut(s)	141, 165
HapII	CCGG	2 cut(s)	114, 125
HgaI	GACGC	3 cut(s)	87, 260, 485
HhaI	GCGC	1 cut(s)	401
Hin1I	GRCGYC	1 cut(s)	729
Hin1II	CATG	4 cut(s)	161, 215, 862, 1031
Hin6I	GCGC	1 cut(s)	399
HinP1I	GCGC	1 cut(s)	399
HincII	GTYRAC	2 cut(s)	121, 475
HindII	GTYRAC	2 cut(s)	121, 475
HindIII	AAGCTT	1 cut(s)	674
HinfI	GANTC	1 cut(s)	117
HpaII	CCGG	2 cut(s)	114, 125
HphI	GGTGA	4 cut(s)	98, 167, 200, 455
Hpy166II	GTNNAC	3 cut(s)	121, 475, 541
Hpy188I	TCNGA	3 cut(s)	103, 765, 1023
Hpy8I	GTNNAC	3 cut(s)	121, 475, 541
HpyAV	CCTTC	8 cut(s)	67, 216, 459, 463, 591, 747, 897, 913
HpyCH4III	ACNGT	1 cut(s)	716
HpyCH4IV	ACGT	4 cut(s)	353, 537, 729, 959
HpyF10VI	GCNNNNNNNGC	8 cut(s)	393, 402, 510, 578, 969, 1040, 1049, 1058
HpyF3I	CTNAG	1 cut(s)	576
HpySE526I	ACGT	4 cut(s)	353, 537, 729, 959
Hsp92I	GRCGYC	1 cut(s)	729
Hsp92II	CATG	4 cut(s)	161, 215, 862, 1031
HspAI	GCGC	1 cut(s)	399
KflI	GGGWCCC	1 cut(s)	128
Kzo9I	GATC	4 cut(s)	103, 328, 708, 775
LmnI	GCTCC	4 cut(s)	208, 622, 889, 935
Lsp1109I	GCAGC	5 cut(s)	491, 559, 950, 953, 1018
LweI	GCATC	1 cut(s)	601
MaeI	CTAG	2 cut(s)	95, 384
MaeII	ACGT	4 cut(s)	353, 537, 729, 959
MaeIII	GTNAC	3 cut(s)	173, 517, 716
MalI	GATC	4 cut(s)	105, 330, 710, 777
MbiI	CCGCTC	1 cut(s)	396
MboI	GATC	4 cut(s)	103, 328, 708, 775
MboII	GAAGA	5 cut(s)	3, 297, 508, 664, 805
MflI	RGATCY	1 cut(s)	708
MhlI	GDGCHC	1 cut(s)	291
MluCI	AATT	8 cut(s)	7, 28, 74, 133, 301, 610, 698, 849
MlyI	GAGTC	1 cut(s)	126
MmeI	TCCRAC	1 cut(s)	302
MnlI	CCTC	7 cut(s)	99, 176, 439, 759, 889, 923, 926
Mph1103I	ATGCAT	1 cut(s)	594
MseI	TTAA	1 cut(s)	587
MspA1I	CMGCKG	2 cut(s)	482, 944
MspI	CCGG	2 cut(s)	114, 125
MspR9I	CCNGG	5 cut(s)	114, 125, 126, 348, 725
MvaI	CCWGG	2 cut(s)	348, 725
MvnI	CGCG	1 cut(s)	401
MwoI	GCNNNNNNNGC	8 cut(s)	393, 402, 510, 578, 969, 1040, 1049, 1058
NciI	CCSGG	3 cut(s)	114, 125, 126
NcoI	CCATGG	1 cut(s)	858
NdeI	CATATG	1 cut(s)	247
NdeII	GATC	4 cut(s)	103, 328, 708, 775
NheI	GCTAGC	1 cut(s)	94
NlaIII	CATG	4 cut(s)	161, 215, 862, 1031
NlaIV	GGNNCC	4 cut(s)	129, 130, 856, 885
NmuCI	GTSAC	2 cut(s)	173, 517
NsiI	ATGCAT	1 cut(s)	594
NspI	RCATGY	1 cut(s)	1031
PaeI	GCATGC	1 cut(s)	1031
PaqCI	CACCTGC	1 cut(s)	186
PflMI	CCANNNNNTGG	1 cut(s)	851
PfoI	TCCNGGA	1 cut(s)	346
PkrI	GCNGC	6 cut(s)	398, 481, 574, 940, 943, 1033
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
PpuMI	RGGWCCY	1 cut(s)	128
PshAI	GACNNNNGTC	1 cut(s)	126
PsiI	TTATAA	1 cut(s)	926
Psp5II	RGGWCCY	1 cut(s)	128
Psp6I	CCWGG	2 cut(s)	346, 723
PspFI	CCCAGC	3 cut(s)	557, 602, 944
PspGI	CCWGG	2 cut(s)	346, 723
PspN4I	GGNNCC	4 cut(s)	129, 130, 856, 885
PspPI	GGNCC	3 cut(s)	128, 140, 854
PspPPI	RGGWCCY	1 cut(s)	128
PstNI	CAGNNNCTG	3 cut(s)	440, 944, 1067
PsuI	RGATCY	1 cut(s)	708
PvuII	CAGCTG	1 cut(s)	944
RsaI	GTAC	2 cut(s)	427, 805
RsaNI	GTAC	2 cut(s)	426, 804
SalI	GTCGAC	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	587
SatI	GCNGC	6 cut(s)	397, 480, 573, 939, 942, 1032
Sau3AI	GATC	4 cut(s)	103, 328, 708, 775
Sau96I	GGNCC	3 cut(s)	128, 140, 854
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	5 cut(s)	114, 125, 126, 348, 725
SduI	GDGCHC	1 cut(s)	291
SfaNI	GCATC	1 cut(s)	601
SinI	GGWCC	2 cut(s)	128, 854
SmaI	CCCGGG	1 cut(s)	126
SphI	GCATGC	1 cut(s)	1031
Sse9I	AATT	8 cut(s)	7, 28, 74, 133, 301, 610, 698, 849
SsiI	CCGC	7 cut(s)	24, 92, 396, 401, 405, 482, 621
SspI	AATATT	1 cut(s)	967
SspMI	CTAG	2 cut(s)	95, 384
StyD4I	CCNGG	5 cut(s)	112, 123, 124, 346, 723
StyI	CCWWGG	1 cut(s)	858
TaaI	ACNGT	1 cut(s)	716
TaiI	ACGT	4 cut(s)	356, 540, 732, 962
TaqI	TCGA	4 cut(s)	60, 120, 595, 783
TasI	AATT	8 cut(s)	7, 28, 74, 133, 301, 610, 698, 849
TatI	WGTACW	1 cut(s)	425
TauI	GCSGC	1 cut(s)	399
Tru1I	TTAA	1 cut(s)	587
Tru9I	TTAA	1 cut(s)	587
TscAI	CASTG	2 cut(s)	364, 689
TseFI	GTSAC	2 cut(s)	173, 517
TseI	GCWGC	5 cut(s)	479, 572, 938, 941, 1031
Tsp45I	GTSAC	2 cut(s)	173, 517
TspDTI	ATGAA	1 cut(s)	998
TspMI	CCCGGG	1 cut(s)	124
TspRI	CASTG	2 cut(s)	364, 689
Van91I	CCANNNNNTGG	1 cut(s)	851
VpaK11BI	GGWCC	2 cut(s)	128, 854
XapI	RAATTY	3 cut(s)	301, 610, 698
XceI	RCATGY	1 cut(s)	1031
XmaI	CCCGGG	1 cut(s)	124
XmiI	GTMKAC	1 cut(s)	120
XspI	CTAG	2 cut(s)	95, 384
ZraI	GACGTC	1 cut(s)	730
Zsp2I	ATGCAT	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.