Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0010569

Physical Location & Seq

Genomic Coordinates Reverse (-)

3868932 .. 3877894

Gene Structure 8963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG053400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2868 bp

ATGTTCAATTCTTCACAATATGCCGCCACTTTCACCTATCAATATCCCAACACCACCTTCGACCCCAACACTCAATTCTCCTATTTTCCTCCGGTAGCGTCCGATCACCTACCCGGAGTCGACCCGGGTCCCAATTCAGGCCCATACCCATTGACCCATGTTGGCCTCCAAAGTCACCTGCCATTTGGTGAAGACCCAAATGCTCCTTCACATGGTTGGCTTGTCAATCAAGCTGTTCCCATCTCATATGACGCTTCAATCAAATCTTTGAATGAGAGCTTGTTAGTGCCCACAAATGCAAATTCTTCGTGGAATAGCATTTGGACGGATCAACCTAATGCGTTTCCAGGGACGTTCAATGGTACAGACAATGCCAGTCTGCCTAGCGAAATGAGCGGCGCGGGCGGGCAAGTGATGTGTGGGAGTACAAGTGCAGTTGCTGGTGAGGAGTTGGGAACAAAGAGAAGGAAGGTTGACGCAGCAGCGGTTGGTTTTGTGAAGATTTGCGAAATGTGCAATGTCACTACCCATAGCCCAGACGTTTACAAGAAGCATTTGGCTGGGAAAAGGCACGCTGCTCAGGCTAACTTAATGCATCGAAGGGCTGGGTTGAATTCTGCTCCCGCAATCCAATCCAAGTCCAATGGCATTTGGAAGAAAGACCCAAATAAAGTCAAGCTTGTTCAGTGTGTATGGTGTGAATTTTGCAAGATCTACTGTAACAGCCAGGACGTCTATGTCAAACACATAGCTGGAAGGAAACATCAAAGGACCTTGGATCAACTCGAAAAGTTGAAGAACAAAGGTACTGCCCCGACCACAAATGTTCCATCAGGTGCAAGAAATCCACAAATTGGTCCCATGGAAAAGACTTCCCAGTCAAAGGCTCCTTCACAAGAGGATTTGGAGACAAAAAAGCAGAAGGTTATAAGAGGAGGAGCAGCAGCTGGGGAAGTTAGAACGTGCAATATTTGCAATGTAGTGTGCAACAGCCAGATAGCTTTCAGTTTTCATCTTTCTGGTCAGAAGCATGCTGCAATGGTGGCGAAACAAGCATTAGAAGCAGATTGGTACCCTTCACCAATTAATTGGCATGATATAACCAAAGGCTATCATCTTAAAAGTGTAAATATTGAAGATGACCCCCTTGGCCTTATTGTTATGGAGTGTGGTGAGCAGGCCCTTTGCATCTTGAGTGTGTCCACTGAGTGGTACTACAAGTTGAGTTGTGTTGCGGTGACCCTGGTAGAATTTAGGCAAACCTCCTTCACAAAGCTTGGTGCTTGTGTACCACAAACTTATGCGGCTCCCGCCTTCATAGTATATGCCGATCTTTTTGTTGGGGTTCCGGGCAGTGATGCTCACATTGAATGTAGCACTGAAGCTCTGATCATGGTTGAGACTGAACTGCGTTATCTGCAGTTTGCTCACCGTGTATTTGGGAAGCTTTGGTCGGAACACAAGAAGCTCCCCTTGGTACCAAGGGTGCCTCTGGGGCGTGCTAGCTGTAGTACAGCTTTAACGTACATCTTGGACTGGATCGATGAAGTAGCAGGCGCGTACTCCCCTCCCCTTGGCCTTATTGTTGAGGTCTGTCTGTGGCTTTCGGACTCTAGATCGCAGTCTCGGAAATCATTGATGTCGAACAGCAGCGGGGGCAGCAATAGTGACAGCTCGTTCGATATTGAGGAGCTCCTGCAGATTGGGACAAGATGCAGAGAGCTTAAGAAAGAAAAGGACATGTTGAAAGAATCACAATCCCAAAGCTTCGGGCTAATCAGGAGTTTGGATGTACATATGAAGTCATTGTCCGAATTCCGCACAGAAGACAAGAAACAAATTCAATTTTTAGAGAAAGAACTCAAGAACTGCTCTCAAGAAATAGATTACCTTCAGGATCAATTAAATGCAAGGGACACAGAAGTGACCTTTCTTGAAGCGCATGTACATAGCTTTGAGTTGAAATTAGCAGACACAGAGAATTTACAGGTGACAGTTGACAGGTTAAGAGAAGAGCTGAAGAAGTCCTATTCAGAGTGCTTGTTCTTAATGCAAGAACTGGAAAGCAAAGAAGTGGAGTTACAGAATTCAAATTTGTGCATAGAGAAACTAGAGGAGTCAGTTTCATCCATGTCATTAGAGTCTCAGTGTGAAATTGAGAGTCTGAAGCTTGATATATTAGCCTTGGAGCAGAGTTGCCTTGAAGCTAAGAAAGTCCAGGAAGAAACTGTTCGAGAAAAAACTAGGATGAATGAGTTAATCCAAGAACTTGAGGTTCAATGTCAGGATGCACAGAAAACTACTAATTGCTTAGATATGGAAAATAAGGAACTAAGGGAGAAGCTTGATGCCTCAGAGACAAATACTAGGATCTTTTGTCAGAGGGTTGAAAAATTGCTGGAAGAGGATTTTGATTTCAAGTCAGAGTCTTTGTTAAGTGAGCTAGAGGGACAGCGCACATTTTCAATAGATATGAGCACTTGTGGAGAAGTCTTGGAGTCACTTTTTTCCAAATTGGCAATGGTACTGGCACCAGATGCCTATTTGATAGTGAAGATGAAGGAGATGTCACACCAGATACATGAATATGAACTTCTTGTGAAGCAACAAAAGGAAGAACTGAGAGAAGAAAAGTTGAAGGCAAAAGAAGAAGCTGAGGATCTGGCTCAAGAAATGGCTGAGCTCAGATACCAACTTACAGGCTTGCTTGAAGACGAGTGTAAGCGTCGTGCTTACATTGAACAAGCATCTCTGCAAAGAATTGCCGAGTTAGAAGCGCAGGTTCAAAAAGCACGGACAAAATCCTTCGCTGGTCTCCTCAGTCTCGATGAACCACAGTGGTGGATGGTCAACAGTTGCGAGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

955

Amino Acids

107.24

Weight (kDa)

5.32

Isoelectric Point (pI)

53.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010569)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g14276 FvH4_5g14276
malus_domestica	MD14G1208900.v1.1
prunus_persica	Prupe.2G102500_v2.0.a1 Prupe.5G201200_v2.0.a1 Prupe.5G201200_v2.0.a1 Prupe.5G201200_v2.0.a1 Prupe.5G201200_v2.0.a1
pyrus_communis	pycom14g17260 pycom14g17270
rosa_chinensis	RchiOBHm_Chr7g0182621
rosa_laevigata	RLG00000005115
rosa_multiflora	Rmu_sc0005811.1_g000011 Rmu_sc0013953.1_g000003
rosa_roxburghii	Rroxscaffold_3G00271120
rosa_rugosa	Rorug06G0448600
rosa_samantha	Rh7AG052500 Rh7BG051700 Rh7CG053400 Rh7DG051700
rosa_wichuraiana	Rw7G004260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	929
AarI	CACCTGC	1 cut(s)	186
AasI	GACNNNNNNGTC	2 cut(s)	737, 877
AatII	GACGTC	1 cut(s)	735
Acc36I	ACCTGC	2 cut(s)	186, 2770
Acc65I	GGTACC	2 cut(s)	1071, 1477
AccB1I	GGYRCC	4 cut(s)	1071, 1477, 1486, 2530
AccB7I	CCANNNNNTGG	2 cut(s)	854, 1209
AccBSI	CCGCTC	1 cut(s)	396
AccI	GTMKAC	1 cut(s)	120
AccII	CGCG	2 cut(s)	401, 1559
AclWI	GGATC	6 cut(s)	336, 786, 1547, 1905, 2378, 2667
AcsI	RAATTY	9 cut(s)	301, 613, 701, 1250, 1814, 1839, 1981, 2086, 2092
AcuI	CTGAAG	4 cut(s)	1401, 1877, 2039, 2186
AcyI	GRCGYC	1 cut(s)	732
AdeI	CACNNNGTG	1 cut(s)	1209
AfiI	CCNNNNNNNGG	6 cut(s)	137, 212, 854, 883, 1209, 1574
AflII	CTTAAG	1 cut(s)	1724
AflIII	ACRYGT	1 cut(s)	1740
AjnI	CCWGG	4 cut(s)	346, 726, 1242, 2217
AjuI	GAANNNNNNNTTGG	8 cut(s)	41, 59, 73, 91, 190, 222, 1457, 1489
AleI	CACNNNNGTG	2 cut(s)	1922, 2839
Alw21I	GWGCWC	3 cut(s)	1695, 2480, 2685
Alw26I	GTCTC	7 cut(s)	902, 1394, 1629, 2148, 2351, 2819, 2828
AlwI	GGATC	6 cut(s)	336, 786, 1547, 1905, 2378, 2667
AlwNI	CAGNNNCTG	2 cut(s)	440, 947
Ama87I	CYCGRG	1 cut(s)	124
AoxI	GGCC	5 cut(s)	139, 163, 1150, 1179, 1576
ApeKI	GCWGC	8 cut(s)	479, 482, 575, 941, 944, 1034, 1650, 1659
ApoI	RAATTY	9 cut(s)	301, 613, 701, 1250, 1814, 1839, 1981, 2086, 2092
ArsI	GACNNNNNNTTYG	2 cut(s)	1661, 1693
AseI	ATTAAT	1 cut(s)	1086
Asp700I	GAANNNNTTC	1 cut(s)	2229
Asp718I	GGTACC	2 cut(s)	1071, 1477
AspLEI	GCGC	5 cut(s)	401, 1559, 1942, 2457, 2779
AspS9I	GGNCC	5 cut(s)	128, 140, 771, 857, 1180
AsuC2I	CCSGG	4 cut(s)	114, 125, 126, 1350
AsuNHI	GCTAGC	1 cut(s)	1502
AvaI	CYCGRG	1 cut(s)	124
AvaII	GGWCC	3 cut(s)	128, 771, 857
BaeGI	GKGCMC	1 cut(s)	291
BanI	GGYRCC	4 cut(s)	1071, 1477, 1486, 2530
BanII	GRGCYC	2 cut(s)	1695, 2685
BarI	GAAGNNNNNNTAC	4 cut(s)	1929, 1961, 2064, 2096
BbsI	GAAGAC	3 cut(s)	198, 1833, 2718
Bbv12I	GWGCWC	3 cut(s)	1695, 2480, 2685
BbvCI	CCTCAGC	1 cut(s)	2655
BbvI	GCAGC	8 cut(s)	491, 494, 562, 953, 956, 1021, 1662, 1671
BccI	CCATC	3 cut(s)	248, 838, 2839
BcgI	CGANNNNNNTGC	2 cut(s)	288, 322
BciT130I	CCWGG	4 cut(s)	348, 728, 1244, 2219
BclI	TGATCA	1 cut(s)	1389
BcnI	CCSGG	4 cut(s)	114, 125, 126, 1350
BcoDI	GTCTC	7 cut(s)	902, 1394, 1629, 2148, 2351, 2819, 2828
BfaI	CTAG	7 cut(s)	384, 1503, 1614, 2111, 2244, 2367, 2444
BfmI	CTRYAG	3 cut(s)	1418, 1507, 1697
BfrI	CTTAAG	1 cut(s)	1724
BfuAI	ACCTGC	2 cut(s)	186, 2770
BglI	GCCNNNNNGGC	1 cut(s)	1495
BglII	AGATCT	1 cut(s)	711
BlpI	GCTNAGC	1 cut(s)	2679
Bme1390I	CCNGG	8 cut(s)	114, 125, 126, 348, 728, 1244, 1350, 2219
Bme18I	GGWCC	3 cut(s)	128, 771, 857
BmeT110I	CYCGRG	1 cut(s)	124
BmgT120I	GGNCC	5 cut(s)	128, 140, 771, 857, 1180
BmrFI	CCNGG	8 cut(s)	114, 125, 126, 348, 728, 1244, 1350, 2219
BmrI	ACTGGG	1 cut(s)	871
BmsI	GCATC	8 cut(s)	604, 1197, 1348, 1703, 2278, 2338, 2527, 2756
BmtI	GCTAGC	1 cut(s)	1506
BmuI	ACTGGG	1 cut(s)	871
BoxI	GACNNNNGTC	1 cut(s)	126
BpiI	GAAGAC	3 cut(s)	198, 1833, 2718
Bpu10I	CCTNAGC	2 cut(s)	579, 2655
Bpu1102I	GCTNAGC	1 cut(s)	2679
BpuEI	CTTGAG	5 cut(s)	1213, 1847, 1860, 2291, 2652
BpuMI	CCSGG	4 cut(s)	114, 125, 126, 1350
Bsa29I	ATCGAT	1 cut(s)	1542
BsaHI	GRCGYC	1 cut(s)	732
BsaI	GGTCTC	1 cut(s)	2819
BsaWI	WCCGGW	1 cut(s)	91
BsaXI	ACNNNNNCTCC	2 cut(s)	415, 445
Bsc4I	CCNNNNNNNGG	6 cut(s)	137, 212, 854, 883, 1209, 1574
Bse1I	ACTGG	5 cut(s)	375, 877, 1541, 2064, 2532
Bse3DI	GCAATG	4 cut(s)	523, 982, 1044, 2526
BseBI	CCWGG	4 cut(s)	348, 728, 1244, 2219
BseCI	ATCGAT	1 cut(s)	1542
BseGI	GGATG	5 cut(s)	1795, 2126, 2253, 2293, 2850
BseLI	CCNNNNNNNGG	6 cut(s)	137, 212, 854, 883, 1209, 1574
BseMI	GCAATG	4 cut(s)	523, 982, 1044, 2526
BseMII	CTCAG	9 cut(s)	593, 1197, 2159, 2367, 2612, 2646, 2670, 2698, 2833
BseNI	ACTGG	5 cut(s)	375, 877, 1541, 2064, 2532
BseRI	GAGGAG	6 cut(s)	461, 948, 951, 1703, 2129, 2807
BseSI	GKGCMC	1 cut(s)	291
BseXI	GCAGC	8 cut(s)	491, 494, 562, 953, 956, 1021, 1662, 1671
BseYI	CCCAGC	3 cut(s)	560, 605, 947
BsgI	GTGCAG	1 cut(s)	453
Bsh1236I	CGCG	2 cut(s)	401, 1559
BshFI	GGCC	5 cut(s)	141, 165, 1152, 1181, 1578
BshNI	GGYRCC	4 cut(s)	1071, 1477, 1486, 2530
BshVI	ATCGAT	1 cut(s)	1542
BsiHKAI	GWGCWC	3 cut(s)	1695, 2480, 2685
BsiHKCI	CYCGRG	1 cut(s)	124
BsiSI	CCGG	4 cut(s)	92, 114, 125, 1349
BslFI	GGGAC	6 cut(s)	114, 364, 843, 1720, 1928, 2463
BslI	CCNNNNNNNGG	6 cut(s)	137, 212, 854, 883, 1209, 1574
BsmAI	GTCTC	7 cut(s)	902, 1394, 1629, 2148, 2351, 2819, 2828
BsmFI	GGGAC	6 cut(s)	114, 364, 843, 1720, 1928, 2463
BsnI	GGCC	5 cut(s)	141, 165, 1152, 1181, 1578
Bso31I	GGTCTC	1 cut(s)	2819
BsoBI	CYCGRG	1 cut(s)	124
Bsp1286I	GDGCHC	4 cut(s)	291, 1695, 2480, 2685
Bsp1407I	TGTACA	2 cut(s)	1792, 1945
Bsp1720I	GCTNAGC	1 cut(s)	2679
Bsp19I	CCATGG	1 cut(s)	861
BspANI	GGCC	5 cut(s)	141, 165, 1152, 1181, 1578
BspCNI	CTCAG	9 cut(s)	592, 1198, 2158, 2366, 2613, 2647, 2671, 2697, 2832
BspDI	ATCGAT	1 cut(s)	1542
BspFNI	CGCG	2 cut(s)	401, 1559
BspMAI	CTGCAG	2 cut(s)	1422, 1701
BspMI	ACCTGC	2 cut(s)	186, 2770
BspOI	GCTAGC	1 cut(s)	1506
BspPI	GGATC	6 cut(s)	336, 786, 1547, 1905, 2378, 2667
BspQI	GCTCTTC	1 cut(s)	2007
BspT107I	GGYRCC	4 cut(s)	1071, 1477, 1486, 2530
BspTI	CTTAAG	1 cut(s)	1724
BspTNI	GGTCTC	1 cut(s)	2819
BsrBI	CCGCTC	1 cut(s)	396
BsrDI	GCAATG	4 cut(s)	523, 982, 1044, 2526
BsrGI	TGTACA	2 cut(s)	1792, 1945
BsrI	ACTGG	5 cut(s)	375, 877, 1541, 2064, 2532
BssNI	GRCGYC	1 cut(s)	732
BssT1I	CCWWGG	7 cut(s)	774, 861, 1147, 1473, 1481, 1573, 2184
Bst2UI	CCWGG	4 cut(s)	348, 728, 1244, 2219
Bst4CI	ACNGT	6 cut(s)	719, 1433, 1996, 2230, 2838, 2855
Bst6I	CTCTTC	2 cut(s)	2007, 2397
BstACI	GRCGYC	1 cut(s)	732
BstAFI	CTTAAG	1 cut(s)	1724
BstAPI	GCANNNNNTGC	2 cut(s)	972, 2537
BstAUI	TGTACA	2 cut(s)	1792, 1945
BstC8I	GCNNGC	9 cut(s)	403, 407, 573, 1032, 1179, 1500, 1504, 1555, 2705
BstDSI	CCRYGG	1 cut(s)	861
BstEII	GGTNACC	1 cut(s)	1237
BstF5I	GGATG	5 cut(s)	1795, 2126, 2253, 2293, 2850
BstFNI	CGCG	2 cut(s)	401, 1559
BstHHI	GCGC	5 cut(s)	401, 1559, 1942, 2457, 2779
BstMAI	GTCTC	7 cut(s)	902, 1394, 1629, 2148, 2351, 2819, 2828
BstNI	CCWGG	4 cut(s)	348, 728, 1244, 2219
BstNSI	RCATGY	3 cut(s)	1034, 1744, 1946
BstPAI	GACNNNNGTC	1 cut(s)	126
BstPI	GGTNACC	1 cut(s)	1237
BstSCI	CCNGG	8 cut(s)	112, 123, 124, 346, 726, 1242, 1348, 2217
BstSFI	CTRYAG	3 cut(s)	1418, 1507, 1697
BstSLI	GKGCMC	1 cut(s)	291
BstUI	CGCG	2 cut(s)	401, 1559
BstV1I	GCAGC	8 cut(s)	491, 494, 562, 953, 956, 1021, 1662, 1671
BstV2I	GAAGAC	3 cut(s)	198, 1833, 2718
BstX2I	RGATCY	3 cut(s)	711, 2370, 2659
BstXI	CCANNNNNNTGG	2 cut(s)	1089, 2841
BstYI	RGATCY	3 cut(s)	711, 2370, 2659
Bsu15I	ATCGAT	1 cut(s)	1542
BsuRI	GGCC	5 cut(s)	141, 165, 1152, 1181, 1578
BsuTUI	ATCGAT	1 cut(s)	1542
BtgI	CCRYGG	1 cut(s)	861
BtsCI	GGATG	5 cut(s)	1795, 2126, 2253, 2293, 2850
BtsI	GCAGTG	1 cut(s)	1360
BtsIMutI	CAGTG	6 cut(s)	692, 1203, 1360, 1377, 2153, 2843
BveI	ACCTGC	2 cut(s)	186, 2770
Cac8I	GCNNGC	9 cut(s)	403, 407, 573, 1032, 1179, 1500, 1504, 1555, 2705
CaiI	CAGNNNCTG	2 cut(s)	440, 947
CfoI	GCGC	5 cut(s)	401, 1559, 1942, 2457, 2779
Cfr13I	GGNCC	5 cut(s)	128, 140, 771, 857, 1180
Cfr9I	CCCGGG	1 cut(s)	124
ClaI	ATCGAT	1 cut(s)	1542
CseI	GACGC	4 cut(s)	87, 260, 485, 2714
DraIII	CACNNNGTG	1 cut(s)	1209
DrdI	GACNNNNNNGTC	2 cut(s)	737, 877
DseDI	GACNNNNNNGTC	2 cut(s)	737, 877
Eam1104I	CTCTTC	2 cut(s)	2007, 2397
EarI	CTCTTC	2 cut(s)	2007, 2397
Ecl136II	GAGCTC	2 cut(s)	1693, 2683
Eco130I	CCWWGG	7 cut(s)	774, 861, 1147, 1473, 1481, 1573, 2184
Eco24I	GRGCYC	2 cut(s)	1695, 2685
Eco31I	GGTCTC	1 cut(s)	2819
Eco47I	GGWCC	3 cut(s)	128, 771, 857
Eco53kI	GAGCTC	2 cut(s)	1693, 2683
Eco57I	CTGAAG	4 cut(s)	1401, 1877, 2039, 2186
Eco88I	CYCGRG	1 cut(s)	124
Eco91I	GGTNACC	1 cut(s)	1237
EcoICRI	GAGCTC	2 cut(s)	1693, 2683
EcoO109I	RGGNCCY	3 cut(s)	128, 771, 1180
EcoO65I	GGTNACC	1 cut(s)	1237
EcoRI	GAATTC	3 cut(s)	613, 1814, 2086
EcoRII	CCWGG	4 cut(s)	346, 726, 1242, 2217
EcoT14I	CCWWGG	7 cut(s)	774, 861, 1147, 1473, 1481, 1573, 2184
EcoT22I	ATGCAT	1 cut(s)	597
EcoT38I	GRGCYC	2 cut(s)	1695, 2685
ErhI	CCWWGG	7 cut(s)	774, 861, 1147, 1473, 1481, 1573, 2184
FalI	AAGNNNNNCTT	4 cut(s)	663, 695, 1457, 1489
FaqI	GGGAC	6 cut(s)	114, 364, 843, 1720, 1928, 2463
FauI	CCCGC	5 cut(s)	394, 398, 631, 1318, 1646
FauNDI	CATATG	2 cut(s)	247, 1797
FbaI	TGATCA	1 cut(s)	1389
FblI	GTMKAC	1 cut(s)	120
FokI	GGATG	5 cut(s)	1802, 2113, 2260, 2300, 2857
FriOI	GRGCYC	2 cut(s)	1695, 2685
FspBI	CTAG	7 cut(s)	384, 1503, 1614, 2111, 2244, 2367, 2444
GlaI	GCGC	5 cut(s)	400, 1558, 1941, 2456, 2778
GsaI	CCCAGC	3 cut(s)	564, 609, 951
HaeIII	GGCC	5 cut(s)	141, 165, 1152, 1181, 1578
HapII	CCGG	4 cut(s)	92, 114, 125, 1349
HgaI	GACGC	4 cut(s)	87, 260, 485, 2714
HhaI	GCGC	5 cut(s)	401, 1559, 1942, 2457, 2779
Hin1I	GRCGYC	1 cut(s)	732
Hin6I	GCGC	5 cut(s)	399, 1557, 1940, 2455, 2777
HinP1I	GCGC	5 cut(s)	399, 1557, 1940, 2455, 2777
HincII	GTYRAC	4 cut(s)	121, 475, 1999, 2851
HindII	GTYRAC	4 cut(s)	121, 475, 1999, 2851
HindIII	AAGCTT	6 cut(s)	677, 1274, 1445, 1765, 2168, 2342
HinfI	GANTC	8 cut(s)	117, 1610, 1751, 2117, 2141, 2161, 2426, 2498
HpaII	CCGG	4 cut(s)	92, 114, 125, 1349
Hpy166II	GTNNAC	7 cut(s)	121, 475, 544, 1203, 1289, 1999, 2851
Hpy8I	GTNNAC	7 cut(s)	121, 475, 544, 1203, 1289, 1999, 2851
Hpy99I	CGWCG	1 cut(s)	2730
HpyCH4III	ACNGT	6 cut(s)	719, 1433, 1996, 2230, 2838, 2855
HpyCH4IV	ACGT	5 cut(s)	353, 540, 732, 962, 1523
HpySE526I	ACGT	5 cut(s)	353, 540, 732, 962, 1523
Hsp92I	GRCGYC	1 cut(s)	732
HspAI	GCGC	5 cut(s)	399, 1557, 1940, 2455, 2777
KflI	GGGWCCC	1 cut(s)	128
KpnI	GGTACC	2 cut(s)	1075, 1481
Ksp22I	TGATCA	1 cut(s)	1389
LguI	GCTCTTC	1 cut(s)	2007
LmnI	GCTCC	9 cut(s)	208, 625, 892, 938, 1312, 1473, 1690, 1698, 2188
Lsp1109I	GCAGC	8 cut(s)	491, 494, 562, 953, 956, 1021, 1662, 1671
LweI	GCATC	8 cut(s)	604, 1197, 1348, 1703, 2278, 2338, 2527, 2756
MaeI	CTAG	7 cut(s)	384, 1503, 1614, 2111, 2244, 2367, 2444
MaeII	ACGT	5 cut(s)	353, 540, 732, 962, 1523
MbiI	CCGCTC	1 cut(s)	396
MflI	RGATCY	3 cut(s)	711, 2370, 2659
MhlI	GDGCHC	4 cut(s)	291, 1695, 2480, 2685
MlyI	GAGTC	7 cut(s)	126, 1604, 2126, 2150, 2170, 2435, 2507
MmeI	TCCRAC	1 cut(s)	1434
Mph1103I	ATGCAT	1 cut(s)	597
MroXI	GAANNNNTTC	1 cut(s)	2229
MslI	CAYNNNNRTG	3 cut(s)	1922, 2586, 2839
MspA1I	CMGCKG	3 cut(s)	485, 947, 1653
MspCI	CTTAAG	1 cut(s)	1724
MspI	CCGG	4 cut(s)	92, 114, 125, 1349
MspR9I	CCNGG	8 cut(s)	114, 125, 126, 348, 728, 1244, 1350, 2219
MvaI	CCWGG	4 cut(s)	348, 728, 1244, 2219
MvnI	CGCG	2 cut(s)	401, 1559
NciI	CCSGG	4 cut(s)	114, 125, 126, 1350
NcoI	CCATGG	1 cut(s)	861
NdeI	CATATG	2 cut(s)	247, 1797
NheI	GCTAGC	1 cut(s)	1502
NmeAIII	GCCGAG	1 cut(s)	2791
NmuCI	GTSAC	8 cut(s)	173, 520, 1237, 1667, 1924, 1990, 2499, 2568
NsiI	ATGCAT	1 cut(s)	597
NspI	RCATGY	3 cut(s)	1034, 1744, 1946
OliI	CACNNNNGTG	2 cut(s)	1922, 2839
PaeI	GCATGC	1 cut(s)	1034
PaqCI	CACCTGC	1 cut(s)	186
PciI	ACATGT	1 cut(s)	1740
PciSI	GCTCTTC	1 cut(s)	2007
PdmI	GAANNNNTTC	1 cut(s)	2229
PfeI	GAWTC	1 cut(s)	1751
PflMI	CCANNNNNTGG	2 cut(s)	854, 1209
PfoI	TCCNGGA	1 cut(s)	2217
PleI	GAGTC	7 cut(s)	125, 1604, 2125, 2149, 2169, 2434, 2506
PpsI	GAGTC	7 cut(s)	125, 1604, 2125, 2149, 2169, 2434, 2506
PpuMI	RGGWCCY	2 cut(s)	128, 771
PscI	ACATGT	1 cut(s)	1740
PshAI	GACNNNNGTC	1 cut(s)	126
PshBI	ATTAAT	1 cut(s)	1086
PsiI	TTATAA	1 cut(s)	929
Psp124BI	GAGCTC	2 cut(s)	1695, 2685
Psp5II	RGGWCCY	2 cut(s)	128, 771
Psp6I	CCWGG	4 cut(s)	346, 726, 1242, 2217
PspEI	GGTNACC	1 cut(s)	1237
PspFI	CCCAGC	3 cut(s)	560, 605, 947
PspGI	CCWGG	4 cut(s)	346, 726, 1242, 2217
PspPI	GGNCC	5 cut(s)	128, 140, 771, 857, 1180
PspPPI	RGGWCCY	2 cut(s)	128, 771
PstI	CTGCAG	2 cut(s)	1422, 1701
PstNI	CAGNNNCTG	2 cut(s)	440, 947
PsuI	RGATCY	3 cut(s)	711, 2370, 2659
PvuII	CAGCTG	1 cut(s)	947
RseI	CAYNNNNRTG	3 cut(s)	1922, 2586, 2839
SacI	GAGCTC	2 cut(s)	1695, 2685
SalI	GTCGAC	1 cut(s)	119
SapI	GCTCTTC	1 cut(s)	2007
Sau96I	GGNCC	5 cut(s)	128, 140, 771, 857, 1180
SchI	GAGTC	7 cut(s)	126, 1604, 2126, 2150, 2170, 2435, 2507
ScrFI	CCNGG	8 cut(s)	114, 125, 126, 348, 728, 1244, 1350, 2219
SduI	GDGCHC	4 cut(s)	291, 1695, 2480, 2685
SfaNI	GCATC	8 cut(s)	604, 1197, 1348, 1703, 2278, 2338, 2527, 2756
SfcI	CTRYAG	3 cut(s)	1418, 1507, 1697
SinI	GGWCC	3 cut(s)	128, 771, 857
SmaI	CCCGGG	1 cut(s)	126
SmiMI	CAYNNNNRTG	3 cut(s)	1922, 2586, 2839
SmlI	CTYRAG	6 cut(s)	1192, 1724, 1862, 1875, 2270, 2667
SmoI	CTYRAG	6 cut(s)	1192, 1724, 1862, 1875, 2270, 2667
SphI	GCATGC	1 cut(s)	1034
SspI	AATATT	2 cut(s)	970, 1132
SspMI	CTAG	7 cut(s)	384, 1503, 1614, 2111, 2244, 2367, 2444
SstI	GAGCTC	2 cut(s)	1695, 2685
StyD4I	CCNGG	8 cut(s)	112, 123, 124, 346, 726, 1242, 1348, 2217
StyI	CCWWGG	7 cut(s)	774, 861, 1147, 1473, 1481, 1573, 2184
TaaI	ACNGT	6 cut(s)	719, 1433, 1996, 2230, 2838, 2855
TaiI	ACGT	5 cut(s)	356, 543, 735, 965, 1526
TaqI	TCGA	9 cut(s)	60, 120, 598, 786, 1542, 1643, 1680, 2233, 2826
TatI	WGTACW	4 cut(s)	425, 1511, 1792, 1945
TauI	GCSGC	3 cut(s)	26, 399, 1307
TfiI	GAWTC	1 cut(s)	1751
TscAI	CASTG	6 cut(s)	692, 1210, 1360, 1384, 2153, 2843
TseFI	GTSAC	8 cut(s)	173, 520, 1237, 1667, 1924, 1990, 2499, 2568
TseI	GCWGC	8 cut(s)	479, 482, 575, 941, 944, 1034, 1650, 1659
Tsp45I	GTSAC	8 cut(s)	173, 520, 1237, 1667, 1924, 1990, 2499, 2568
TspGWI	ACGGA	2 cut(s)	341, 2809
TspMI	CCCGGG	1 cut(s)	124
TspRI	CASTG	6 cut(s)	692, 1210, 1360, 1384, 2153, 2843
Van91I	CCANNNNNTGG	2 cut(s)	854, 1209
Vha464I	CTTAAG	1 cut(s)	1724
VpaK11BI	GGWCC	3 cut(s)	128, 771, 857
VspI	ATTAAT	1 cut(s)	1086
XapI	RAATTY	9 cut(s)	301, 613, 701, 1250, 1814, 1839, 1981, 2086, 2092
XbaI	TCTAGA	1 cut(s)	1613
XceI	RCATGY	3 cut(s)	1034, 1744, 1946
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2518
XmaI	CCCGGG	1 cut(s)	124
XmiI	GTMKAC	1 cut(s)	120
XmnI	GAANNNNTTC	1 cut(s)	2229
XspI	CTAG	7 cut(s)	384, 1503, 1614, 2111, 2244, 2367, 2444
ZraI	GACGTC	1 cut(s)	733
Zsp2I	ATGCAT	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.