Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0011149

Physical Location & Seq

Genomic Coordinates Reverse (-)

19525328 .. 19528582

Gene Structure 3255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G138200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGCCCAAACACGATCTCTCAGACACGGAACACGAAGAAACCTCCGAGAACTCAAGCTCAGAGTCAGAGGAGGTGGGAAAGCCCAGCAATGGCCAAAAAGACCGAGTGGGATCATCAGTCTCAGAGTACGAGAAGCAGAGGCTATCGAGAATTGCAGAAAACAGGGAAAGAATGGAGGCTCTAGGTCTGCCTAAAATTGCTTCTTCCGTAATGGGTTCGGGCCAGAATGGGAAGAGAAAGAACAAGAAGGTGCAGAAGGGGAAAGCCAAGGTCTTTGAGGACGATGAAGAGTATAGGCCTGAAGAGGAGGAATCTTGTTCATATTCTAGCCAGGAGGAAGCTATGGAGGAGGATGATGACGATGATTATTTGGGTGAAAAAACATCTGGGTCACGCAGAAAAAAGGTGAAGAATAAAGGTTCAAAATCTAAGAAGGCTCTTCCCCGAAGTATTTTGAGTAACAACGATTTCATCAATGATGACGAGGCGTTGAAGCAGGCAATTGCTATGTCATTACAAGGGTCGGTAGAAGTTTCAGCTGTGGCACATAGTGGGCCTTTACAGCGCCCTAATGTGGATAATGCTAAGGTTAACGAAAGAAAGGGAAACAATCAGATTCCGGAAGATACAGGGAGGAAGAGGAAAAAATCGTTTGCTAGTCGGCTGCAGATGACAGAGGATGAGTTGGTTTTGCATTTCTTCCAGTTTGATGAGAACTGCAATGGAGGACTTTCTCTACGGGATTTACAAAGAGTGGCAACTGCTCATGATTTTATGTGGACTGATAAGGAGTTGGCTGACATGATTCGCTGTTTTGATAGTGATGGTGATGGGAAGCTGAGTTTGGATGAGTTTCGGAAGATTGTTGTTCGTTGCAACATGATAAAAGAGCCTGAACAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_7 EF-hand_8

Protein Analysis

302

Amino Acids

33.95

Weight (kDa)

5.28

Isoelectric Point (pI)

46.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73440 AT4G00140
fragaria_vesca	FvH4_7g11100 FvH4_7g11100
malus_domestica	MD02G1210400.v1.1
prunus_persica	Prupe.2G138200_v2.0.a1 Prupe.2G138200_v2.0.a1
pyrus_communis	pycom02g17220 pycom07g10880
rosa_chinensis	RchiOBHm_Chr1g0349121
rosa_laevigata	RLG00000028604
rosa_multiflora	Rmu_sc0008324.1_g000005 Rmu_sc0012100.1_g000007
rosa_roxburghii	Rroxscaffold_4G00306100
rosa_rugosa	Rorug01G0200300
rosa_samantha	Rh1AG218000 Rh1BG183600 Rh1CG202400 Rh1DG213400
rosa_wichuraiana	Rw1G018530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	619
AclWI	GGATC	1 cut(s)	118
AcoI	YGGCCR	1 cut(s)	91
AcuI	CTGAAG	1 cut(s)	321
AdeI	CACNNNGTG	1 cut(s)	551
AfaI	GTAC	1 cut(s)	128
AfiI	CCNNNNNNNGG	2 cut(s)	89, 574
AgsI	TTSAA	2 cut(s)	423, 493
AjnI	CCWGG	1 cut(s)	330
AjuI	GAANNNNNNNTTGG	2 cut(s)	827, 859
AluBI	AGCT	4 cut(s)	57, 341, 539, 838
AluI	AGCT	4 cut(s)	57, 341, 539, 838
Alw26I	GTCTC	1 cut(s)	124
AlwI	GGATC	1 cut(s)	118
Aor13HI	TCCGGA	1 cut(s)	619
AoxI	GGCC	4 cut(s)	91, 220, 296, 554
ApeKI	GCWGC	1 cut(s)	664
AspLEI	GCGC	1 cut(s)	567
AspS9I	GGNCC	2 cut(s)	220, 554
AsuHPI	GGTGA	3 cut(s)	386, 418, 839
BalI	TGGCCA	1 cut(s)	93
BbvI	GCAGC	1 cut(s)	651
BccI	CCATC	2 cut(s)	818, 824
BciT130I	CCWGG	1 cut(s)	332
BcoDI	GTCTC	1 cut(s)	124
BfaI	CTAG	3 cut(s)	182, 327, 657
BfmI	CTRYAG	1 cut(s)	665
BfoI	RGCGCY	1 cut(s)	568
BisI	GCNGC	1 cut(s)	665
BlsI	GCNGC	1 cut(s)	666
Bme1390I	CCNGG	1 cut(s)	332
BmgT120I	GGNCC	2 cut(s)	220, 554
BmrFI	CCNGG	1 cut(s)	332
Bpu10I	CCTNAGC	1 cut(s)	585
BpuEI	CTTGAG	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	267
BsaWI	WCCGGW	1 cut(s)	619
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 574
Bse1I	ACTGG	1 cut(s)	703
Bse3DI	GCAATG	2 cut(s)	94, 727
BseAI	TCCGGA	1 cut(s)	619
BseBI	CCWGG	1 cut(s)	332
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	3 cut(s)	358, 685, 853
BseLI	CCNNNNNNNGG	2 cut(s)	89, 574
BseMI	GCAATG	2 cut(s)	94, 727
BseMII	CTCAG	4 cut(s)	33, 72, 135, 830
BseNI	ACTGG	1 cut(s)	703
BseRI	GAGGAG	3 cut(s)	83, 320, 362
BseXI	GCAGC	1 cut(s)	651
BseYI	CCCAGC	1 cut(s)	83
BsgI	GTGCAG	1 cut(s)	272
BshFI	GGCC	4 cut(s)	93, 222, 298, 556
BsiSI	CCGG	1 cut(s)	620
BslI	CCNNNNNNNGG	2 cut(s)	89, 574
BsmAI	GTCTC	1 cut(s)	124
BsnI	GGCC	4 cut(s)	93, 222, 298, 556
Bsp13I	TCCGGA	1 cut(s)	619
Bsp143I	GATC	2 cut(s)	13, 110
BspANI	GGCC	4 cut(s)	93, 222, 298, 556
BspCNI	CTCAG	4 cut(s)	32, 71, 134, 831
BspEI	TCCGGA	1 cut(s)	619
BspHI	TCATGA	1 cut(s)	766
BspMAI	CTGCAG	1 cut(s)	669
BspPI	GGATC	1 cut(s)	118
BspQI	GCTCTTC	1 cut(s)	444
BsrDI	GCAATG	2 cut(s)	94, 727
BsrI	ACTGG	1 cut(s)	703
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	2 cut(s)	13, 110
BssT1I	CCWWGG	1 cut(s)	267
Bst2UI	CCWGG	1 cut(s)	332
Bst4CI	ACNGT	1 cut(s)	900
Bst6I	CTCTTC	5 cut(s)	227, 282, 297, 444, 632
BstC8I	GCNNGC	1 cut(s)	498
BstDEI	CTNAG	6 cut(s)	19, 58, 121, 429, 585, 839
BstF5I	GGATG	3 cut(s)	358, 685, 853
BstH2I	RGCGCY	1 cut(s)	568
BstHHI	GCGC	1 cut(s)	567
BstKTI	GATC	2 cut(s)	16, 113
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	2 cut(s)	13, 110
BstMWI	GCNNNNNNNGC	1 cut(s)	562
BstNI	CCWGG	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	330
BstSFI	CTRYAG	1 cut(s)	665
BstV1I	GCAGC	1 cut(s)	651
BsuRI	GGCC	4 cut(s)	93, 222, 298, 556
BtsCI	GGATG	3 cut(s)	358, 685, 853
Cac8I	GCNNGC	1 cut(s)	498
CciI	TCATGA	1 cut(s)	766
CfoI	GCGC	1 cut(s)	567
Cfr13I	GGNCC	2 cut(s)	220, 554
Csp6I	GTAC	1 cut(s)	127
CviAII	CATG	3 cut(s)	767, 802, 880
CviQI	GTAC	1 cut(s)	127
DdeI	CTNAG	6 cut(s)	19, 58, 121, 429, 585, 839
DpnI	GATC	2 cut(s)	15, 112
DpnII	GATC	2 cut(s)	13, 110
DraIII	CACNNNGTG	1 cut(s)	551
EaeI	YGGCCR	1 cut(s)	91
Eam1104I	CTCTTC	5 cut(s)	227, 282, 297, 444, 632
EarI	CTCTTC	5 cut(s)	227, 282, 297, 444, 632
Eco130I	CCWWGG	1 cut(s)	267
Eco147I	AGGCCT	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	321
EcoRII	CCWGG	1 cut(s)	330
EcoT14I	CCWWGG	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	3 cut(s)	770, 805, 883
FaiI	YATR	9 cut(s)	294, 322, 344, 509, 549, 768, 776, 803, 881
FatI	CATG	3 cut(s)	766, 801, 879
Fnu4HI	GCNGC	1 cut(s)	665
FokI	GGATG	3 cut(s)	365, 692, 860
Fsp4HI	GCNGC	1 cut(s)	665
FspBI	CTAG	3 cut(s)	182, 327, 657
GlaI	GCGC	1 cut(s)	566
GluI	GCNGC	1 cut(s)	665
GsaI	CCCAGC	1 cut(s)	87
HaeII	RGCGCY	1 cut(s)	568
HaeIII	GGCC	4 cut(s)	93, 222, 298, 556
HapII	CCGG	1 cut(s)	620
HhaI	GCGC	1 cut(s)	567
Hin1II	CATG	3 cut(s)	770, 805, 883
Hin6I	GCGC	1 cut(s)	565
HinP1I	GCGC	1 cut(s)	565
HincII	GTYRAC	1 cut(s)	592
HindII	GTYRAC	1 cut(s)	592
HinfI	GANTC	4 cut(s)	62, 311, 616, 805
HpaI	GTTAAC	1 cut(s)	592
HpaII	CCGG	1 cut(s)	620
HphI	GGTGA	3 cut(s)	386, 418, 839
Hpy166II	GTNNAC	2 cut(s)	592, 780
Hpy188I	TCNGA	7 cut(s)	22, 46, 61, 67, 124, 615, 858
Hpy188III	TCNNGA	4 cut(s)	147, 620, 767, 903
Hpy8I	GTNNAC	2 cut(s)	592, 780
HpyAV	CCTTC	3 cut(s)	241, 250, 427
HpyCH4III	ACNGT	1 cut(s)	900
HpyCH4V	TGCA	6 cut(s)	155, 253, 667, 694, 720, 876
HpyF10VI	GCNNNNNNNGC	1 cut(s)	562
HpyF3I	CTNAG	6 cut(s)	19, 58, 121, 429, 585, 839
Hsp92II	CATG	3 cut(s)	770, 805, 883
HspAI	GCGC	1 cut(s)	565
Kpn2I	TCCGGA	1 cut(s)	619
KspAI	GTTAAC	1 cut(s)	592
Kzo9I	GATC	2 cut(s)	13, 110
LguI	GCTCTTC	1 cut(s)	444
Lsp1109I	GCAGC	1 cut(s)	651
MaeI	CTAG	3 cut(s)	182, 327, 657
MaeIII	GTNAC	2 cut(s)	390, 458
MalI	GATC	2 cut(s)	15, 112
MboI	GATC	2 cut(s)	13, 110
MfeI	CAATTG	1 cut(s)	501
MlsI	TGGCCA	1 cut(s)	93
MluCI	AATT	3 cut(s)	150, 195, 501
MluNI	TGGCCA	1 cut(s)	93
MlyI	GAGTC	1 cut(s)	71
Mox20I	TGGCCA	1 cut(s)	93
MroI	TCCGGA	1 cut(s)	619
MscI	TGGCCA	1 cut(s)	93
MseI	TTAA	1 cut(s)	591
Msp20I	TGGCCA	1 cut(s)	93
MspA1I	CMGCKG	1 cut(s)	539
MspI	CCGG	1 cut(s)	620
MspR9I	CCNGG	1 cut(s)	332
MunI	CAATTG	1 cut(s)	501
MvaI	CCWGG	1 cut(s)	332
MwoI	GCNNNNNNNGC	1 cut(s)	562
NdeII	GATC	2 cut(s)	13, 110
NlaIII	CATG	3 cut(s)	770, 805, 883
NmuCI	GTSAC	1 cut(s)	390
PagI	TCATGA	1 cut(s)	766
PceI	AGGCCT	1 cut(s)	298
PciSI	GCTCTTC	1 cut(s)	444
PfeI	GAWTC	3 cut(s)	311, 616, 805
PkrI	GCNGC	1 cut(s)	666
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	330
PspFI	CCCAGC	1 cut(s)	83
PspGI	CCWGG	1 cut(s)	330
PspPI	GGNCC	2 cut(s)	220, 554
PstI	CTGCAG	1 cut(s)	669
PvuII	CAGCTG	1 cut(s)	539
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
SapI	GCTCTTC	1 cut(s)	444
SaqAI	TTAA	1 cut(s)	591
SatI	GCNGC	1 cut(s)	665
Sau3AI	GATC	2 cut(s)	13, 110
Sau96I	GGNCC	2 cut(s)	220, 554
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	1 cut(s)	332
SfcI	CTRYAG	1 cut(s)	665
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
Sse9I	AATT	3 cut(s)	150, 195, 501
SseBI	AGGCCT	1 cut(s)	298
SspMI	CTAG	3 cut(s)	182, 327, 657
StuI	AGGCCT	1 cut(s)	298
StyD4I	CCNGG	1 cut(s)	330
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	900
TaqI	TCGA	1 cut(s)	146
TaqII	GACCGA	1 cut(s)	117
TasI	AATT	3 cut(s)	150, 195, 501
TfiI	GAWTC	3 cut(s)	311, 616, 805
Tru1I	TTAA	1 cut(s)	591
Tru9I	TTAA	1 cut(s)	591
TseFI	GTSAC	1 cut(s)	390
TseI	GCWGC	1 cut(s)	664
Tsp45I	GTSAC	1 cut(s)	390
TspDTI	ATGAA	3 cut(s)	300, 309, 460
TspGWI	ACGGA	2 cut(s)	41, 196
XspI	CTAG	3 cut(s)	182, 327, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.