Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0011149

Physical Location & Seq

Genomic Coordinates Reverse (-)

40842618 .. 40845015

Gene Structure 2398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G018530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGCCCAAACACTCTGATCCCTCAGACGAAGAAACCCCCGAGGACTCGAGCTCAGGCTCGGAGGAACAAAACCCACAAGATGGTGGTGTTCCAGAGTACGAGAAGCAGAGGCAAGCGAGAATTGCACACAACAGGGCCAGAATGGAGGCTCTGGGTCTGCCCAAAATCGCTTCCTCTCTAATGGGTTCGGCCCAGAATGCGACGAAGAGGAAGAGGAAGGGAAAAGCCAAGGTCTTGGAGGAGGACGACGATGATGAGTATAGGCCTGAAGAGGCTTCTTCTAGTGAAGACGAAGCTAATGATGAGGATTTTGAGGATGAAAAATCATCTAGTGCACGTAAGAAAAAGAATAAAGGTTCAAAACCTAAAAAGGCTTGTTCAAGAAGAAGTAGTTTGAGCAACTCGGATTACCTTGATGATGATGAGGCATTGAAGCAAGCAATTGCTCTTTCATTGCAAGATTCTGCTGTTTCAGGTGTGGTAAAAGCTAATGTTAATGAAAGAAAAGGAGAGAATCAAATTCAGCAAGATTCAGTGAGGAAGAGGAAAAACTCGTTTGCTAGTCGGCTGCAGATGACAGAGGATGAGTTTGTTTTGCACTTCTTTCAGTTTGATGAGAAATGCAATGGGGGAATTTCTGCTAGAGATTTAGAAAGAGTAGCTATTACTCATGATTTTATGTGGACTGATAAGGAGGTGGCTGACATGATTCATCTCTTTGATAGTGATGGAGATGCAAAGCGAAGTCTTGAAGATTTTCGGAAGATTGTTGTTCGCTGCAACATGATAAAAGCACCTGAAAATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_7 EF-hand_8

Protein Analysis

269

Amino Acids

30.28

Weight (kDa)

5.16

Isoelectric Point (pI)

55.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011149)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73440 AT4G00140
fragaria_vesca	FvH4_7g11100 FvH4_7g11100
malus_domestica	MD02G1210400.v1.1
prunus_persica	Prupe.2G138200_v2.0.a1 Prupe.2G138200_v2.0.a1
pyrus_communis	pycom02g17220 pycom07g10880
rosa_chinensis	RchiOBHm_Chr1g0349121
rosa_laevigata	RLG00000028604
rosa_multiflora	Rmu_sc0008324.1_g000005 Rmu_sc0012100.1_g000007
rosa_roxburghii	Rroxscaffold_4G00306100
rosa_rugosa	Rorug01G0200300
rosa_samantha	Rh1AG218000 Rh1BG183600 Rh1CG202400 Rh1DG213400
rosa_wichuraiana	Rw1G018530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	80
AclWI	GGATC	1 cut(s)	11
AcsI	RAATTY	3 cut(s)	519, 633, 802
AcuI	CTGAAG	1 cut(s)	288
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	1 cut(s)	80
AgsI	TTSAA	4 cut(s)	360, 381, 433, 752
AluBI	AGCT	4 cut(s)	51, 296, 488, 662
AluI	AGCT	4 cut(s)	51, 296, 488, 662
Alw21I	GWGCWC	2 cut(s)	53, 337
Alw44I	GTGCAC	1 cut(s)	333
AlwI	GGATC	1 cut(s)	11
Ama87I	CYCGRG	2 cut(s)	38, 46
AoxI	GGCC	3 cut(s)	135, 189, 263
ApaLI	GTGCAC	1 cut(s)	333
ApeKI	GCWGC	2 cut(s)	568, 777
ApoI	RAATTY	3 cut(s)	519, 633, 802
Asp700I	GAANNNNTTC	1 cut(s)	756
AspS9I	GGNCC	2 cut(s)	135, 190
AvaI	CYCGRG	2 cut(s)	38, 46
BaeGI	GKGCMC	1 cut(s)	337
BanII	GRGCYC	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	294
Bbv12I	GWGCWC	2 cut(s)	53, 337
BbvI	GCAGC	2 cut(s)	555, 764
BccI	CCATC	2 cut(s)	74, 722
BfaI	CTAG	4 cut(s)	282, 330, 561, 642
BfmI	CTRYAG	1 cut(s)	569
BisI	GCNGC	2 cut(s)	569, 778
BlsI	GCNGC	2 cut(s)	570, 779
BmeT110I	CYCGRG	2 cut(s)	38, 46
BmgT120I	GGNCC	2 cut(s)	135, 190
BmsI	GCATC	1 cut(s)	724
BpiI	GAAGAC	1 cut(s)	294
Bpu10I	CCTNAGC	1 cut(s)	52
BsaAI	YACGTR	1 cut(s)	338
BsaJI	CCNNGG	2 cut(s)	39, 228
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
Bse3DI	GCAATG	2 cut(s)	452, 631
BseDI	CCNNGG	2 cut(s)	39, 228
BseGI	GGATG	2 cut(s)	322, 589
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseMI	GCAATG	2 cut(s)	452, 631
BseMII	CTCAG	2 cut(s)	36, 66
BseRI	GAGGAG	1 cut(s)	254
BseSI	GKGCMC	1 cut(s)	337
BseXI	GCAGC	2 cut(s)	555, 764
BshFI	GGCC	3 cut(s)	137, 191, 265
BsiHKAI	GWGCWC	2 cut(s)	53, 337
BsiHKCI	CYCGRG	2 cut(s)	38, 46
BslI	CCNNNNNNNGG	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	202
BsnI	GGCC	3 cut(s)	137, 191, 265
BsoBI	CYCGRG	2 cut(s)	38, 46
Bsp1286I	GDGCHC	2 cut(s)	53, 337
Bsp143I	GATC	1 cut(s)	16
BspANI	GGCC	3 cut(s)	137, 191, 265
BspCNI	CTCAG	2 cut(s)	35, 65
BspHI	TCATGA	2 cut(s)	670, 806
BspMAI	CTGCAG	1 cut(s)	573
BspPI	GGATC	1 cut(s)	11
BsrDI	GCAATG	2 cut(s)	452, 631
BssECI	CCNNGG	2 cut(s)	39, 228
BssMI	GATC	1 cut(s)	16
BssT1I	CCWWGG	1 cut(s)	228
Bst6I	CTCTTC	4 cut(s)	200, 206, 264, 536
BstBAI	YACGTR	1 cut(s)	338
BstC8I	GCNNGC	2 cut(s)	114, 438
BstDEI	CTNAG	2 cut(s)	22, 52
BstF5I	GGATG	2 cut(s)	322, 589
BstKTI	GATC	1 cut(s)	19
BstMBI	GATC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 197
BstSFI	CTRYAG	1 cut(s)	569
BstSLI	GKGCMC	1 cut(s)	337
BstV1I	GCAGC	2 cut(s)	555, 764
BstV2I	GAAGAC	1 cut(s)	294
BstXI	CCANNNNNNTGG	1 cut(s)	235
BsuRI	GGCC	3 cut(s)	137, 191, 265
BtsCI	GGATG	2 cut(s)	322, 589
BtsIMutI	CAGTG	1 cut(s)	540
Cac8I	GCNNGC	2 cut(s)	114, 438
CciI	TCATGA	2 cut(s)	670, 806
Cfr13I	GGNCC	2 cut(s)	135, 190
Csp6I	GTAC	1 cut(s)	97
CviAII	CATG	4 cut(s)	671, 706, 784, 807
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	2 cut(s)	22, 52
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
Eam1104I	CTCTTC	4 cut(s)	200, 206, 264, 536
EarI	CTCTTC	4 cut(s)	200, 206, 264, 536
Ecl136II	GAGCTC	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	228
Eco147I	AGGCCT	1 cut(s)	265
Eco24I	GRGCYC	1 cut(s)	53
Eco53kI	GAGCTC	1 cut(s)	51
Eco57I	CTGAAG	1 cut(s)	288
Eco88I	CYCGRG	2 cut(s)	38, 46
EcoICRI	GAGCTC	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	228
EcoT38I	GRGCYC	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	4 cut(s)	674, 709, 787, 810
FaiI	YATR	6 cut(s)	261, 672, 680, 707, 785, 808
FatI	CATG	4 cut(s)	670, 705, 783, 806
Fnu4HI	GCNGC	2 cut(s)	569, 778
FokI	GGATG	2 cut(s)	329, 596
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	2 cut(s)	569, 778
FspBI	CTAG	4 cut(s)	282, 330, 561, 642
GluI	GCNGC	2 cut(s)	569, 778
HaeIII	GGCC	3 cut(s)	137, 191, 265
Hin1II	CATG	4 cut(s)	674, 709, 787, 810
HinfI	GANTC	5 cut(s)	44, 461, 514, 530, 709
Hpy166II	GTNNAC	2 cut(s)	335, 684
Hpy188I	TCNGA	5 cut(s)	16, 25, 61, 406, 762
Hpy188III	TCNNGA	5 cut(s)	92, 381, 671, 749, 807
Hpy8I	GTNNAC	2 cut(s)	335, 684
Hpy99I	CGWCG	2 cut(s)	205, 251
HpyAV	CCTTC	1 cut(s)	211
HpyCH4IV	ACGT	1 cut(s)	337
HpyCH4V	TGCA	8 cut(s)	125, 335, 457, 571, 598, 624, 737, 780
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 197
HpyF3I	CTNAG	2 cut(s)	22, 52
HpySE526I	ACGT	1 cut(s)	337
Hsp92II	CATG	4 cut(s)	674, 709, 787, 810
Kzo9I	GATC	1 cut(s)	16
LpnPI	CCDG	8 cut(s)	39, 105, 118, 137, 151, 206, 279, 459
Lsp1109I	GCAGC	2 cut(s)	555, 764
LweI	GCATC	1 cut(s)	724
MaeI	CTAG	4 cut(s)	282, 330, 561, 642
MaeII	ACGT	1 cut(s)	337
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MfeI	CAATTG	1 cut(s)	441
MhlI	GDGCHC	2 cut(s)	53, 337
MluCI	AATT	5 cut(s)	120, 441, 519, 633, 802
MlyI	GAGTC	1 cut(s)	38
MroXI	GAANNNNTTC	1 cut(s)	756
MseI	TTAA	1 cut(s)	495
MunI	CAATTG	1 cut(s)	441
Mva1269I	GAATGC	1 cut(s)	202
MwoI	GCNNNNNNNGC	2 cut(s)	122, 197
NdeII	GATC	1 cut(s)	16
NlaIII	CATG	4 cut(s)	674, 709, 787, 810
PaeR7I	CTCGAG	1 cut(s)	46
PagI	TCATGA	2 cut(s)	670, 806
PceI	AGGCCT	1 cut(s)	265
PctI	GAATGC	1 cut(s)	202
PdmI	GAANNNNTTC	1 cut(s)	756
PfeI	GAWTC	4 cut(s)	461, 514, 530, 709
PflMI	CCANNNNNTGG	1 cut(s)	80
PkrI	GCNGC	2 cut(s)	570, 779
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
Ppu21I	YACGTR	1 cut(s)	338
Psp124BI	GAGCTC	1 cut(s)	53
PspPI	GGNCC	2 cut(s)	135, 190
PspXI	VCTCGAGB	1 cut(s)	46
PstI	CTGCAG	1 cut(s)	573
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
SacI	GAGCTC	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	495
SatI	GCNGC	2 cut(s)	569, 778
Sau3AI	GATC	1 cut(s)	16
Sau96I	GGNCC	2 cut(s)	135, 190
SchI	GAGTC	1 cut(s)	38
SduI	GDGCHC	2 cut(s)	53, 337
SfaNI	GCATC	1 cut(s)	724
SfcI	CTRYAG	1 cut(s)	569
Sfr274I	CTCGAG	1 cut(s)	46
SlaI	CTCGAG	1 cut(s)	46
SmlI	CTYRAG	1 cut(s)	46
SmoI	CTYRAG	1 cut(s)	46
Sse9I	AATT	5 cut(s)	120, 441, 519, 633, 802
SseBI	AGGCCT	1 cut(s)	265
SspMI	CTAG	4 cut(s)	282, 330, 561, 642
SstI	GAGCTC	1 cut(s)	53
StuI	AGGCCT	1 cut(s)	265
StyI	CCWWGG	1 cut(s)	228
TaiI	ACGT	1 cut(s)	340
TaqI	TCGA	1 cut(s)	47
TasI	AATT	5 cut(s)	120, 441, 519, 633, 802
TfiI	GAWTC	4 cut(s)	461, 514, 530, 709
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TscAI	CASTG	1 cut(s)	540
TseI	GCWGC	2 cut(s)	568, 777
TspDTI	ATGAA	5 cut(s)	333, 441, 513, 701, 795
TspRI	CASTG	1 cut(s)	540
Van91I	CCANNNNNTGG	1 cut(s)	80
VneI	GTGCAC	1 cut(s)	333
XapI	RAATTY	3 cut(s)	519, 633, 802
XhoI	CTCGAG	1 cut(s)	46
XmnI	GAANNNNTTC	1 cut(s)	756
XspI	CTAG	4 cut(s)	282, 330, 561, 642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.