EF-hand domain pair
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G73440 AT4G00140 |
| fragaria_vesca | FvH4_7g11100 FvH4_7g11100 |
| malus_domestica | MD02G1210400.v1.1 |
| prunus_persica | Prupe.2G138200_v2.0.a1 Prupe.2G138200_v2.0.a1 |
| pyrus_communis | pycom02g17220 pycom07g10880 |
| rosa_chinensis | RchiOBHm_Chr1g0349121 |
| rosa_laevigata | RLG00000028604 |
| rosa_multiflora | Rmu_sc0008324.1_g000005 Rmu_sc0012100.1_g000007 |
| rosa_roxburghii | Rroxscaffold_4G00306100 |
| rosa_rugosa | Rorug01G0200300 |
| rosa_samantha | Rh1AG218000 Rh1BG183600 Rh1CG202400 Rh1DG213400 |
| rosa_wichuraiana | Rw1G018530 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 80 |
| AclWI | GGATC | 1 cut(s) | 11 |
| AcsI | RAATTY | 1 cut(s) | 519 |
| AcuI | CTGAAG | 1 cut(s) | 288 |
| AfaI | GTAC | 1 cut(s) | 98 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 80 |
| AgsI | TTSAA | 3 cut(s) | 360, 381, 433 |
| AluBI | AGCT | 3 cut(s) | 51, 296, 488 |
| AluI | AGCT | 3 cut(s) | 51, 296, 488 |
| Alw21I | GWGCWC | 2 cut(s) | 53, 337 |
| Alw44I | GTGCAC | 1 cut(s) | 333 |
| AlwI | GGATC | 1 cut(s) | 11 |
| Ama87I | CYCGRG | 2 cut(s) | 38, 46 |
| AoxI | GGCC | 3 cut(s) | 135, 189, 263 |
| ApaLI | GTGCAC | 1 cut(s) | 333 |
| ApoI | RAATTY | 1 cut(s) | 519 |
| AspS9I | GGNCC | 2 cut(s) | 135, 190 |
| AsuHPI | GGTGA | 1 cut(s) | 575 |
| AvaI | CYCGRG | 2 cut(s) | 38, 46 |
| BaeGI | GKGCMC | 1 cut(s) | 337 |
| BanII | GRGCYC | 1 cut(s) | 53 |
| BbsI | GAAGAC | 1 cut(s) | 294 |
| Bbv12I | GWGCWC | 2 cut(s) | 53, 337 |
| BccI | CCATC | 1 cut(s) | 74 |
| BfaI | CTAG | 2 cut(s) | 282, 330 |
| BmeT110I | CYCGRG | 2 cut(s) | 38, 46 |
| BmgT120I | GGNCC | 2 cut(s) | 135, 190 |
| BmsI | GCATC | 1 cut(s) | 567 |
| BpiI | GAAGAC | 1 cut(s) | 294 |
| Bpu10I | CCTNAGC | 1 cut(s) | 52 |
| BsaAI | YACGTR | 1 cut(s) | 338 |
| BsaJI | CCNNGG | 1 cut(s) | 39 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 80 |
| Bse3DI | GCAATG | 1 cut(s) | 452 |
| BseDI | CCNNGG | 1 cut(s) | 39 |
| BseGI | GGATG | 1 cut(s) | 322 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 80 |
| BseMI | GCAATG | 1 cut(s) | 452 |
| BseMII | CTCAG | 3 cut(s) | 36, 66, 72 |
| BseRI | GAGGAG | 1 cut(s) | 254 |
| BseSI | GKGCMC | 1 cut(s) | 337 |
| BshFI | GGCC | 3 cut(s) | 137, 191, 265 |
| BsiHKAI | GWGCWC | 2 cut(s) | 53, 337 |
| BsiHKCI | CYCGRG | 2 cut(s) | 38, 46 |
| BslFI | GGGAC | 1 cut(s) | 601 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 80 |
| BsmFI | GGGAC | 1 cut(s) | 601 |
| BsmI | GAATGC | 1 cut(s) | 202 |
| BsnI | GGCC | 3 cut(s) | 137, 191, 265 |
| BsoBI | CYCGRG | 2 cut(s) | 38, 46 |
| Bsp1286I | GDGCHC | 2 cut(s) | 53, 337 |
| Bsp143I | GATC | 1 cut(s) | 16 |
| BspANI | GGCC | 3 cut(s) | 137, 191, 265 |
| BspCNI | CTCAG | 3 cut(s) | 35, 65, 71 |
| BspPI | GGATC | 1 cut(s) | 11 |
| BsrDI | GCAATG | 1 cut(s) | 452 |
| BssECI | CCNNGG | 1 cut(s) | 39 |
| BssMI | GATC | 1 cut(s) | 16 |
| Bst6I | CTCTTC | 3 cut(s) | 200, 264, 536 |
| BstBAI | YACGTR | 1 cut(s) | 338 |
| BstC8I | GCNNGC | 2 cut(s) | 114, 438 |
| BstDEI | CTNAG | 3 cut(s) | 22, 52, 58 |
| BstF5I | GGATG | 1 cut(s) | 322 |
| BstKTI | GATC | 1 cut(s) | 19 |
| BstMBI | GATC | 1 cut(s) | 16 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 122, 197 |
| BstSLI | GKGCMC | 1 cut(s) | 337 |
| BstV2I | GAAGAC | 1 cut(s) | 294 |
| BsuRI | GGCC | 3 cut(s) | 137, 191, 265 |
| BtsCI | GGATG | 1 cut(s) | 322 |
| Cac8I | GCNNGC | 2 cut(s) | 114, 438 |
| Cfr13I | GGNCC | 2 cut(s) | 135, 190 |
| Csp6I | GTAC | 1 cut(s) | 97 |
| CviQI | GTAC | 1 cut(s) | 97 |
| DdeI | CTNAG | 3 cut(s) | 22, 52, 58 |
| DpnI | GATC | 1 cut(s) | 18 |
| DpnII | GATC | 1 cut(s) | 16 |
| Eam1104I | CTCTTC | 3 cut(s) | 200, 264, 536 |
| EarI | CTCTTC | 3 cut(s) | 200, 264, 536 |
| Ecl136II | GAGCTC | 1 cut(s) | 51 |
| Eco147I | AGGCCT | 1 cut(s) | 265 |
| Eco24I | GRGCYC | 1 cut(s) | 53 |
| Eco53kI | GAGCTC | 1 cut(s) | 51 |
| Eco57I | CTGAAG | 1 cut(s) | 288 |
| Eco88I | CYCGRG | 2 cut(s) | 38, 46 |
| EcoICRI | GAGCTC | 1 cut(s) | 51 |
| EcoT38I | GRGCYC | 1 cut(s) | 53 |
| FaiI | YATR | 1 cut(s) | 261 |
| FaqI | GGGAC | 1 cut(s) | 601 |
| FokI | GGATG | 1 cut(s) | 329 |
| FriOI | GRGCYC | 1 cut(s) | 53 |
| FspBI | CTAG | 2 cut(s) | 282, 330 |
| HaeIII | GGCC | 3 cut(s) | 137, 191, 265 |
| HinfI | GANTC | 4 cut(s) | 44, 461, 514, 530 |
| HphI | GGTGA | 1 cut(s) | 575 |
| Hpy166II | GTNNAC | 1 cut(s) | 335 |
| Hpy188I | TCNGA | 4 cut(s) | 16, 25, 61, 406 |
| Hpy188III | TCNNGA | 2 cut(s) | 92, 381 |
| Hpy8I | GTNNAC | 1 cut(s) | 335 |
| Hpy99I | CGWCG | 3 cut(s) | 205, 251, 254 |
| HpyAV | CCTTC | 3 cut(s) | 205, 211, 223 |
| HpyCH4IV | ACGT | 1 cut(s) | 337 |
| HpyCH4V | TGCA | 3 cut(s) | 125, 335, 457 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 122, 197 |
| HpyF3I | CTNAG | 3 cut(s) | 22, 52, 58 |
| HpySE526I | ACGT | 1 cut(s) | 337 |
| Kzo9I | GATC | 1 cut(s) | 16 |
| LweI | GCATC | 1 cut(s) | 567 |
| MaeI | CTAG | 2 cut(s) | 282, 330 |
| MaeII | ACGT | 1 cut(s) | 337 |
| MalI | GATC | 1 cut(s) | 18 |
| MboI | GATC | 1 cut(s) | 16 |
| MboII | GAAGA | 7 cut(s) | 41, 217, 270, 281, 299, 396, 553 |
| MfeI | CAATTG | 1 cut(s) | 441 |
| MhlI | GDGCHC | 2 cut(s) | 53, 337 |
| MluCI | AATT | 4 cut(s) | 120, 441, 519, 611 |
| MlyI | GAGTC | 1 cut(s) | 38 |
| MseI | TTAA | 1 cut(s) | 495 |
| MunI | CAATTG | 1 cut(s) | 441 |
| Mva1269I | GAATGC | 1 cut(s) | 202 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 122, 197 |
| NdeII | GATC | 1 cut(s) | 16 |
| PaeR7I | CTCGAG | 1 cut(s) | 46 |
| PceI | AGGCCT | 1 cut(s) | 265 |
| PctI | GAATGC | 1 cut(s) | 202 |
| PfeI | GAWTC | 3 cut(s) | 461, 514, 530 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 80 |
| PleI | GAGTC | 1 cut(s) | 38 |
| PpsI | GAGTC | 1 cut(s) | 38 |
| Ppu21I | YACGTR | 1 cut(s) | 338 |
| Psp124BI | GAGCTC | 1 cut(s) | 53 |
| PspPI | GGNCC | 2 cut(s) | 135, 190 |
| PspXI | VCTCGAGB | 1 cut(s) | 46 |
| RsaI | GTAC | 1 cut(s) | 98 |
| RsaNI | GTAC | 1 cut(s) | 97 |
| SacI | GAGCTC | 1 cut(s) | 53 |
| SaqAI | TTAA | 1 cut(s) | 495 |
| Sau3AI | GATC | 1 cut(s) | 16 |
| Sau96I | GGNCC | 2 cut(s) | 135, 190 |
| SchI | GAGTC | 1 cut(s) | 38 |
| SduI | GDGCHC | 2 cut(s) | 53, 337 |
| SetI | ASST | 9 cut(s) | 53, 234, 298, 340, 358, 367, 414, 478, 490 |
| SfaNI | GCATC | 1 cut(s) | 567 |
| Sfr274I | CTCGAG | 1 cut(s) | 46 |
| SlaI | CTCGAG | 1 cut(s) | 46 |
| SmlI | CTYRAG | 1 cut(s) | 46 |
| SmoI | CTYRAG | 1 cut(s) | 46 |
| Sse9I | AATT | 4 cut(s) | 120, 441, 519, 611 |
| SseBI | AGGCCT | 1 cut(s) | 265 |
| SspMI | CTAG | 2 cut(s) | 282, 330 |
| SstI | GAGCTC | 1 cut(s) | 53 |
| StuI | AGGCCT | 1 cut(s) | 265 |
| TaiI | ACGT | 1 cut(s) | 340 |
| TaqI | TCGA | 1 cut(s) | 47 |
| TasI | AATT | 4 cut(s) | 120, 441, 519, 611 |
| TfiI | GAWTC | 3 cut(s) | 461, 514, 530 |
| Tru1I | TTAA | 1 cut(s) | 495 |
| Tru9I | TTAA | 1 cut(s) | 495 |
| TspDTI | ATGAA | 2 cut(s) | 333, 513 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 80 |
| VneI | GTGCAC | 1 cut(s) | 333 |
| XapI | RAATTY | 1 cut(s) | 519 |
| XhoI | CTCGAG | 1 cut(s) | 46 |
| XspI | CTAG | 2 cut(s) | 282, 330 |