Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007425

Physical Location & Seq

Genomic Coordinates Forward (+)

25770134 .. 25773649

Gene Structure 3516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G236000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGGCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCAATGGAACCTTCGATGAGGTGAAGAAGATTGTGAAGATACTCAATGAGGGACAAGTGCCATCACAAGATGTTGTGGAGGTTGTGGTGAGCCCACCATATGTGTTTCTTCCAGTGGTGAAGAGTTCGTTGAGGCCTGACTTTCATGTTGCGGCTCAAAACTGCTGGGTCAAGAAGGGTGGTGCCTTCACTGGTGAAGTTAGTGCTGAAATGCTGGTCAATCTGGAGGTTCCTTGGGTCATTCTTGGTCATTCTGAGAGAAGACTTATTTTAGGCGAATCCAATGAGTTTGTTGCCGATAAGGTTGCATATGCACTAGCTCAAGGTTTGAAGGTGATTGCTTGTGTTGGTGAGACTCTTGAGCAGCGAGAATCTGGCTCGACCGTGGAGGTTGTGGCTGCACAAACCAAGGCCATTGCAGCAAAAGTGTCAGATTGGACCAATGTTGTGTTGGCCTATGAGCCCGTGTGGGCCATTGGAACTGGCAAAGTTGCATCTCCAGCTCAGGCTCAGGAAGTGCATTTTGAATTGAGGAAATGGCTTCAAGCAAACGTAAGTCCTGAAGTTGCTGCAACAACCAGGATCATTTATGGAGGGTCTGTCAATGGTGCAAACAGCAAAGAGCTGGCAGGTCAGCCCGATGTTGACGGATTTTTGGTTGGTGGAGCTTCTCTAAAGCCTGAGTTTATTGACATTATCAAGTCTGCGGAGGTGAAGAAAAGTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00051 ko00562 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00051 map00562 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

TIM

Protein Analysis

255

Amino Acids

27.28

Weight (kDa)

6.0

Isoelectric Point (pI)

27.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55440
fragaria_vesca	FvH4_7g22530
malus_domestica	MD00G1012200.v1.1 MD01G1134600.v1.1 MD07G1199300.v1.1
prunus_persica	Prupe.2G236000_v2.0.a1 Prupe.2G236000_v2.0.a1 Prupe.6G076300_v2.0.a1
pyrus_communis	pycom01g15530 pycom11g08880
rosa_chinensis	RchiOBHm_Chr1g0367211 RchiOBHm_Chr5g0064961
rosa_laevigata	RLG00000027289 RLG00000035744
rosa_multiflora	Rmu_sc0003352.1_g000017 Rmu_sc0011000.1_g000007
rosa_roxburghii	Rroxscaffold_1G00016360 Rroxscaffold_4G00289520
rosa_rugosa	Rorug01G0335500 Rorug05G0366800
rosa_samantha	Rh1CG319000 Rh1DG335100 Rh5CG462800
rosa_wichuraiana	Rw1G030410 Rw5G039960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	656
AccB1I	GGYRCC	1 cut(s)	218
AciI	CCGC	3 cut(s)	24, 188, 743
AclWI	GGATC	1 cut(s)	626
AcuI	CTGAAG	1 cut(s)	618
AgsI	TTSAA	3 cut(s)	367, 563, 581
AjnI	CCWGG	1 cut(s)	614
AluBI	AGCT	4 cut(s)	356, 539, 661, 704
AluI	AGCT	4 cut(s)	356, 539, 661, 704
Alw26I	GTCTC	1 cut(s)	383
AlwI	GGATC	1 cut(s)	626
AoxI	GGCC	4 cut(s)	170, 447, 489, 507
ApeKI	GCWGC	4 cut(s)	400, 434, 455, 605
Asp700I	GAANNNNTTC	1 cut(s)	14
AspS9I	GGNCC	2 cut(s)	474, 507
AsuHPI	GGTGA	7 cut(s)	70, 136, 166, 242, 382, 398, 760
AvaII	GGWCC	1 cut(s)	474
BanI	GGYRCC	1 cut(s)	218
BanII	GRGCYC	2 cut(s)	131, 501
BbsI	GAAGAC	1 cut(s)	304
BbvI	GCAGC	4 cut(s)	412, 421, 467, 592
BccI	CCATC	1 cut(s)	106
BcgI	CGANNNNNNTGC	2 cut(s)	323, 357
BciT130I	CCWGG	1 cut(s)	616
BcoDI	GTCTC	1 cut(s)	383
BfaI	CTAG	1 cut(s)	353
BfuAI	ACCTGC	1 cut(s)	656
BisI	GCNGC	6 cut(s)	25, 189, 401, 435, 456, 606
BlsI	GCNGC	6 cut(s)	26, 190, 402, 436, 457, 607
Bme1390I	CCNGG	1 cut(s)	616
Bme18I	GGWCC	1 cut(s)	474
BmgT120I	GGNCC	2 cut(s)	474, 507
BmiI	GGNNCC	3 cut(s)	46, 220, 267
BmrFI	CCNGG	1 cut(s)	616
BmsI	GCATC	1 cut(s)	539
BpiI	GAAGAC	1 cut(s)	304
BpmI	CTGGAG	2 cut(s)	281, 519
Bpu10I	CCTNAGC	2 cut(s)	540, 546
BpuEI	CTTGAG	2 cut(s)	342, 416
BsaJI	CCNNGG	3 cut(s)	269, 420, 444
BsaXI	ACNNNNNCTCC	2 cut(s)	621, 651
Bse1I	ACTGG	4 cut(s)	35, 149, 232, 523
Bse3DI	GCAATG	2 cut(s)	46, 450
BseBI	CCWGG	1 cut(s)	616
BseDI	CCNNGG	3 cut(s)	269, 420, 444
BseMI	GCAATG	2 cut(s)	46, 450
BseMII	CTCAG	4 cut(s)	282, 554, 560, 708
BseNI	ACTGG	4 cut(s)	35, 149, 232, 523
BseXI	GCAGC	4 cut(s)	412, 421, 467, 592
BseYI	CCCAGC	1 cut(s)	201
BsgI	GTGCAG	1 cut(s)	420
Bsh1285I	CGRYCG	1 cut(s)	420
BshFI	GGCC	4 cut(s)	172, 449, 491, 509
BshNI	GGYRCC	1 cut(s)	218
BsiEI	CGRYCG	1 cut(s)	420
BslFI	GGGAC	1 cut(s)	102
BsmAI	GTCTC	1 cut(s)	383
BsmFI	GGGAC	1 cut(s)	102
BsnI	GGCC	4 cut(s)	172, 449, 491, 509
Bsp1286I	GDGCHC	2 cut(s)	131, 501
Bsp143I	GATC	1 cut(s)	618
BspACI	CCGC	3 cut(s)	24, 188, 743
BspANI	GGCC	4 cut(s)	172, 449, 491, 509
BspCNI	CTCAG	4 cut(s)	283, 553, 559, 709
BspLI	GGNNCC	3 cut(s)	46, 220, 267
BspMI	ACCTGC	1 cut(s)	656
BspPI	GGATC	1 cut(s)	626
BspT107I	GGYRCC	1 cut(s)	218
BsrDI	GCAATG	2 cut(s)	46, 450
BsrI	ACTGG	4 cut(s)	35, 149, 232, 523
BssECI	CCNNGG	3 cut(s)	269, 420, 444
BssMI	GATC	1 cut(s)	618
BssT1I	CCWWGG	2 cut(s)	269, 444
Bst2UI	CCWGG	1 cut(s)	616
Bst4CI	ACNGT	1 cut(s)	421
Bst6I	CTCTTC	1 cut(s)	152
BstC8I	GCNNGC	1 cut(s)	663
BstDEI	CTNAG	4 cut(s)	291, 540, 546, 717
BstDSI	CCRYGG	1 cut(s)	420
BstKTI	GATC	1 cut(s)	621
BstMAI	GTCTC	1 cut(s)	383
BstMBI	GATC	1 cut(s)	618
BstMCI	CGRYCG	1 cut(s)	420
BstMWI	GCNNNNNNNGC	2 cut(s)	455, 536
BstNI	CCWGG	1 cut(s)	616
BstSCI	CCNGG	1 cut(s)	614
BstV1I	GCAGC	4 cut(s)	412, 421, 467, 592
BstV2I	GAAGAC	1 cut(s)	304
BsuRI	GGCC	4 cut(s)	172, 449, 491, 509
BtgI	CCRYGG	1 cut(s)	420
BtsIMutI	CAGTG	2 cut(s)	156, 225
BveI	ACCTGC	1 cut(s)	656
Cac8I	GCNNGC	1 cut(s)	663
Cfr13I	GGNCC	2 cut(s)	474, 507
CspCI	CAANNNNNGTGG	2 cut(s)	196, 231
CviAII	CATG	1 cut(s)	182
DdeI	CTNAG	4 cut(s)	291, 540, 546, 717
DpnI	GATC	1 cut(s)	620
DpnII	GATC	1 cut(s)	618
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
Eco130I	CCWWGG	2 cut(s)	269, 444
Eco147I	AGGCCT	1 cut(s)	172
Eco24I	GRGCYC	2 cut(s)	131, 501
Eco47I	GGWCC	1 cut(s)	474
Eco57I	CTGAAG	1 cut(s)	618
EcoRII	CCWGG	1 cut(s)	614
EcoT14I	CCWWGG	2 cut(s)	269, 444
EcoT38I	GRGCYC	2 cut(s)	131, 501
ErhI	CCWWGG	2 cut(s)	269, 444
FaeI	CATG	1 cut(s)	185
FaiI	YATR	7 cut(s)	136, 138, 183, 346, 348, 495, 627
FaqI	GGGAC	1 cut(s)	102
FatI	CATG	1 cut(s)	181
FauNDI	CATATG	2 cut(s)	136, 346
Fnu4HI	GCNGC	6 cut(s)	25, 189, 401, 435, 456, 606
FriOI	GRGCYC	2 cut(s)	131, 501
Fsp4HI	GCNGC	6 cut(s)	25, 189, 401, 435, 456, 606
FspBI	CTAG	1 cut(s)	353
GluI	GCNGC	6 cut(s)	25, 189, 401, 435, 456, 606
GsaI	CCCAGC	1 cut(s)	205
GsuI	CTGGAG	2 cut(s)	281, 519
HaeIII	GGCC	4 cut(s)	172, 449, 491, 509
Hin1II	CATG	1 cut(s)	185
HincII	GTYRAC	1 cut(s)	682
HindII	GTYRAC	1 cut(s)	682
HinfI	GANTC	3 cut(s)	314, 391, 407
HphI	GGTGA	7 cut(s)	70, 136, 166, 242, 382, 398, 760
Hpy166II	GTNNAC	1 cut(s)	682
Hpy188I	TCNGA	2 cut(s)	292, 469
Hpy188III	TCNNGA	5 cut(s)	208, 260, 395, 548, 596
Hpy8I	GTNNAC	1 cut(s)	682
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	4 cut(s)	58, 205, 232, 361
HpyCH4III	ACNGT	1 cut(s)	421
HpyCH4IV	ACGT	1 cut(s)	588
HpyCH4V	TGCA	9 cut(s)	39, 344, 350, 437, 455, 530, 556, 608, 647
HpyF10VI	GCNNNNNNNGC	2 cut(s)	455, 536
HpyF3I	CTNAG	4 cut(s)	291, 540, 546, 717
HpySE526I	ACGT	1 cut(s)	588
Hsp92II	CATG	1 cut(s)	185
Kzo9I	GATC	1 cut(s)	618
LmnI	GCTCC	1 cut(s)	701
Lsp1109I	GCAGC	4 cut(s)	412, 421, 467, 592
LweI	GCATC	1 cut(s)	539
MaeI	CTAG	1 cut(s)	353
MaeII	ACGT	1 cut(s)	588
MalI	GATC	1 cut(s)	620
MboI	GATC	1 cut(s)	618
MboII	GAAGA	8 cut(s)	7, 73, 76, 85, 137, 169, 309, 763
MhlI	GDGCHC	2 cut(s)	131, 501
MluCI	AATT	1 cut(s)	563
MlyI	GAGTC	1 cut(s)	385
MnlI	CCTC	9 cut(s)	49, 79, 109, 162, 256, 418, 561, 623, 739
MroXI	GAANNNNTTC	1 cut(s)	14
MspR9I	CCNGG	1 cut(s)	616
MvaI	CCWGG	1 cut(s)	616
MwoI	GCNNNNNNNGC	2 cut(s)	455, 536
NdeI	CATATG	2 cut(s)	136, 346
NdeII	GATC	1 cut(s)	618
NlaIII	CATG	1 cut(s)	185
NlaIV	GGNNCC	3 cut(s)	46, 220, 267
PceI	AGGCCT	1 cut(s)	172
PdmI	GAANNNNTTC	1 cut(s)	14
PfeI	GAWTC	2 cut(s)	314, 407
PkrI	GCNGC	6 cut(s)	26, 190, 402, 436, 457, 607
PleI	GAGTC	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	385
Psp6I	CCWGG	1 cut(s)	614
PspFI	CCCAGC	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	614
PspN4I	GGNNCC	3 cut(s)	46, 220, 267
PspPI	GGNCC	2 cut(s)	474, 507
SatI	GCNGC	6 cut(s)	25, 189, 401, 435, 456, 606
Sau3AI	GATC	1 cut(s)	618
Sau96I	GGNCC	2 cut(s)	474, 507
SchI	GAGTC	1 cut(s)	385
ScrFI	CCNGG	1 cut(s)	616
SduI	GDGCHC	2 cut(s)	131, 501
SfaNI	GCATC	1 cut(s)	539
SinI	GGWCC	1 cut(s)	474
SmlI	CTYRAG	2 cut(s)	357, 395
SmoI	CTYRAG	2 cut(s)	357, 395
Sse9I	AATT	1 cut(s)	563
SseBI	AGGCCT	1 cut(s)	172
SsiI	CCGC	3 cut(s)	24, 188, 743
SspMI	CTAG	1 cut(s)	353
StuI	AGGCCT	1 cut(s)	172
StyD4I	CCNGG	1 cut(s)	614
StyI	CCWWGG	2 cut(s)	269, 444
TaaI	ACNGT	1 cut(s)	421
TaiI	ACGT	1 cut(s)	591
TaqI	TCGA	2 cut(s)	51, 416
TasI	AATT	1 cut(s)	563
TauI	GCSGC	2 cut(s)	27, 191
TfiI	GAWTC	2 cut(s)	314, 407
TscAI	CASTG	2 cut(s)	156, 232
TseI	GCWGC	4 cut(s)	400, 434, 455, 605
TspDTI	ATGAA	1 cut(s)	170
TspGWI	ACGGA	1 cut(s)	699
TspRI	CASTG	2 cut(s)	156, 232
VpaK11BI	GGWCC	1 cut(s)	474
XcmI	CCANNNNNNNNNTGG	1 cut(s)	484
XmnI	GAANNNNTTC	1 cut(s)	14
XspI	CTAG	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.