Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003352.1

Orthogroup ID

OG0007425

Physical Location & Seq

Genomic Coordinates Forward (+)

74081 .. 77048

Gene Structure 2968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003352.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atgggcaggaaattcttcgtcggtggcaactggaaatgcaatgggacaacttcagaggtgaagaagattgtctccacattgaatgaagctgaagtcccttcagaagatgttgtggaggttgttgtgagccctccctttgtgtttcttgcttatgtgaaaagtttgttgcggtctgatttccatgttgcggcacagaactgttgggttcggagaggtggtgcgtttactggagagattagtgctgagatgctggtcaatttgggaattccctgggtcattatcggccattctgagagaagacaaattctaaatgaatccaatgagtttgttggggacaaagttggatatgcactttctcaaggcctgaaagttattgcctgtattggagagactcttgagcagcgagaatcaggatctacagtggctgttgttgctgcacaaacaagagcaatagcagataaagtatcaagctgggagaacattgttttggcatatgagccagtttgggccattggcactgggaaggttgcaacccctgatcaggcacagcaagtccattttgaattgaggaaatggcttcaagtcaatgttggtgctgaagtcgctgcatcaaccagaattatttacggaggttctgtaaatggagcaaactgcaaagaattggcaacacagccagacgttgatgggtttttggttggcggagcttcccttaagccggagttcattgacattatcaattctgctacagtgaagaaggatgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004807 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0005975 GO:0005996 GO:0006006 GO:0006066 GO:0006071 GO:0006081 GO:0006082 GO:0006090 GO:0006091 GO:0006094 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016051 GO:0016052 GO:0016053 GO:0016310 GO:0016853 GO:0016860 GO:0016861 GO:0017144 GO:0018130 GO:0019318 GO:0019319 GO:0019359 GO:0019362 GO:0019363 GO:0019400 GO:0019405 GO:0019438 GO:0019439 GO:0019563 GO:0019637 GO:0019682 GO:0019693 GO:0019751 GO:0019752 GO:0030054 GO:0030312 GO:0031090 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042221 GO:0042866 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044262 GO:0044270 GO:0044271 GO:0044275 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046164 GO:0046166 GO:0046174 GO:0046184 GO:0046364 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046686 GO:0046700 GO:0046872 GO:0046914 GO:0046939 GO:0048046 GO:0050896 GO:0051186 GO:0051188 GO:0055044 GO:0055086 GO:0071704 GO:0071944 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:0098588 GO:0098805 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1901615 GO:1901616

KEGG Pathways

Metabolic & Signaling

ko00010 ko00051 ko00562 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00051 map00562 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

TIM

Protein Analysis

254

Amino Acids

27.42

Weight (kDa)

5.37

Isoelectric Point (pI)

26.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55440
fragaria_vesca	FvH4_7g22530
malus_domestica	MD00G1012200.v1.1 MD01G1134600.v1.1 MD07G1199300.v1.1
prunus_persica	Prupe.2G236000_v2.0.a1 Prupe.2G236000_v2.0.a1 Prupe.6G076300_v2.0.a1
pyrus_communis	pycom01g15530 pycom11g08880
rosa_chinensis	RchiOBHm_Chr1g0367211 RchiOBHm_Chr5g0064961
rosa_laevigata	RLG00000027289 RLG00000035744
rosa_multiflora	Rmu_sc0003352.1_g000017 Rmu_sc0011000.1_g000007
rosa_roxburghii	Rroxscaffold_1G00016360 Rroxscaffold_4G00289520
rosa_rugosa	Rorug01G0335500 Rorug05G0366800
rosa_samantha	Rh1CG319000 Rh1DG335100 Rh5CG462800
rosa_wichuraiana	Rw1G030410 Rw5G039960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	169, 188, 699
AclWI	GGATC	1 cut(s)	421
AcoI	YGGCCR	1 cut(s)	283
AcsI	RAATTY	3 cut(s)	11, 264, 303
AcuI	CTGAAG	4 cut(s)	36, 84, 111, 618
AfiI	CCNNNNNNNGG	3 cut(s)	187, 541, 715
AflII	CTTAAG	1 cut(s)	710
AgsI	TTSAA	3 cut(s)	82, 563, 581
AjnI	CCWGG	1 cut(s)	269
AjuI	GAANNNNNNNTTGG	2 cut(s)	470, 502
AluBI	AGCT	3 cut(s)	89, 471, 704
AluI	AGCT	3 cut(s)	89, 471, 704
Alw26I	GTCTC	2 cut(s)	76, 383
AlwI	GGATC	1 cut(s)	421
AlwNI	CAGNNNCTG	1 cut(s)	425
AoxI	GGCC	3 cut(s)	283, 361, 507
ApeKI	GCWGC	3 cut(s)	400, 434, 605
ApoI	RAATTY	3 cut(s)	11, 264, 303
Asp700I	GAANNNNTTC	1 cut(s)	14
AspS9I	GGNCC	1 cut(s)	507
AsuHPI	GGTGA	1 cut(s)	70
BanII	GRGCYC	1 cut(s)	131
BbsI	GAAGAC	1 cut(s)	304
BbvI	GCAGC	3 cut(s)	412, 421, 592
BccI	CCATC	1 cut(s)	677
BciT130I	CCWGG	1 cut(s)	271
BclI	TGATCA	1 cut(s)	538
BcoDI	GTCTC	2 cut(s)	76, 383
BfmI	CTRYAG	2 cut(s)	417, 744
BfrI	CTTAAG	1 cut(s)	710
BisI	GCNGC	4 cut(s)	189, 401, 435, 606
BlsI	GCNGC	4 cut(s)	190, 402, 436, 607
Bme1390I	CCNGG	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	507
BmrFI	CCNGG	1 cut(s)	271
BmrI	ACTGGG	1 cut(s)	528
BmsI	GCATC	2 cut(s)	237, 617
BmuI	ACTGGG	1 cut(s)	528
BpiI	GAAGAC	1 cut(s)	304
BpmI	CTGGAG	1 cut(s)	249
BpuEI	CTTGAG	2 cut(s)	342, 416
BsaJI	CCNNGG	2 cut(s)	269, 270
BsaXI	ACNNNNNCTCC	4 cut(s)	202, 232, 621, 651
Bsc4I	CCNNNNNNNGG	3 cut(s)	187, 541, 715
Bse1I	ACTGG	4 cut(s)	35, 232, 500, 523
Bse3DI	GCAATG	1 cut(s)	46
BseBI	CCWGG	1 cut(s)	271
BseDI	CCNNGG	2 cut(s)	269, 270
BseGI	GGATG	1 cut(s)	763
BseLI	CCNNNNNNNGG	3 cut(s)	187, 541, 715
BseMI	GCAATG	1 cut(s)	46
BseMII	CTCAG	2 cut(s)	234, 282
BseNI	ACTGG	4 cut(s)	35, 232, 500, 523
BseXI	GCAGC	3 cut(s)	412, 421, 592
BseYI	CCCAGC	1 cut(s)	471
BsgI	GTGCAG	1 cut(s)	420
BshFI	GGCC	3 cut(s)	285, 363, 509
BsiSI	CCGG	1 cut(s)	716
BslFI	GGGAC	3 cut(s)	58, 80, 347
BslI	CCNNNNNNNGG	3 cut(s)	187, 541, 715
BsmAI	GTCTC	2 cut(s)	76, 383
BsmFI	GGGAC	3 cut(s)	58, 80, 347
BsnI	GGCC	3 cut(s)	285, 363, 509
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp143I	GATC	2 cut(s)	413, 538
BspACI	CCGC	3 cut(s)	169, 188, 699
BspANI	GGCC	3 cut(s)	285, 363, 509
BspCNI	CTCAG	2 cut(s)	235, 283
BspPI	GGATC	1 cut(s)	421
BspTI	CTTAAG	1 cut(s)	710
BsrDI	GCAATG	1 cut(s)	46
BsrI	ACTGG	4 cut(s)	35, 232, 500, 523
BssECI	CCNNGG	2 cut(s)	269, 270
BssMI	GATC	2 cut(s)	413, 538
Bst2UI	CCWGG	1 cut(s)	271
Bst4CI	ACNGT	3 cut(s)	200, 421, 748
BstAFI	CTTAAG	1 cut(s)	710
BstDEI	CTNAG	2 cut(s)	243, 291
BstF5I	GGATG	1 cut(s)	763
BstKTI	GATC	2 cut(s)	416, 541
BstMAI	GTCTC	2 cut(s)	76, 383
BstMBI	GATC	2 cut(s)	413, 538
BstMWI	GCNNNNNNNGC	2 cut(s)	431, 602
BstNI	CCWGG	1 cut(s)	271
BstSCI	CCNGG	1 cut(s)	269
BstSFI	CTRYAG	2 cut(s)	417, 744
BstV1I	GCAGC	3 cut(s)	412, 421, 592
BstV2I	GAAGAC	1 cut(s)	304
BstX2I	RGATCY	1 cut(s)	413
BstYI	RGATCY	1 cut(s)	413
BsuRI	GGCC	3 cut(s)	285, 363, 509
BtsCI	GGATG	1 cut(s)	763
BtsIMutI	CAGTG	3 cut(s)	426, 516, 753
CaiI	CAGNNNCTG	1 cut(s)	425
Cfr13I	GGNCC	1 cut(s)	507
CviAII	CATG	1 cut(s)	182
DdeI	CTNAG	2 cut(s)	243, 291
DpnI	GATC	2 cut(s)	415, 540
DpnII	GATC	2 cut(s)	413, 538
EaeI	YGGCCR	1 cut(s)	283
EciI	GGCGGA	1 cut(s)	714
Eco147I	AGGCCT	1 cut(s)	363
Eco24I	GRGCYC	1 cut(s)	131
Eco57I	CTGAAG	4 cut(s)	36, 84, 111, 618
EcoRI	GAATTC	1 cut(s)	264
EcoRII	CCWGG	1 cut(s)	269
EcoT38I	GRGCYC	1 cut(s)	131
FaeI	CATG	1 cut(s)	185
FaiI	YATR	5 cut(s)	153, 183, 348, 493, 495
FaqI	GGGAC	3 cut(s)	58, 80, 347
FatI	CATG	1 cut(s)	181
FauNDI	CATATG	1 cut(s)	493
FbaI	TGATCA	1 cut(s)	538
Fnu4HI	GCNGC	4 cut(s)	189, 401, 435, 606
FriOI	GRGCYC	1 cut(s)	131
Fsp4HI	GCNGC	4 cut(s)	189, 401, 435, 606
GluI	GCNGC	4 cut(s)	189, 401, 435, 606
GsaI	CCCAGC	1 cut(s)	475
GsuI	CTGGAG	1 cut(s)	249
HaeIII	GGCC	3 cut(s)	285, 363, 509
HapII	CCGG	1 cut(s)	716
Hin1II	CATG	1 cut(s)	185
HinfI	GANTC	3 cut(s)	314, 391, 407
HpaII	CCGG	1 cut(s)	716
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	5 cut(s)	55, 103, 175, 210, 292
Hpy188III	TCNNGA	2 cut(s)	395, 411
Hpy8I	GTNNAC	1 cut(s)	225
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	3 cut(s)	108, 517, 748
HpyCH4III	ACNGT	3 cut(s)	200, 421, 748
HpyCH4IV	ACGT	1 cut(s)	678
HpyCH4V	TGCA	6 cut(s)	39, 350, 437, 530, 608, 654
HpyF10VI	GCNNNNNNNGC	2 cut(s)	431, 602
HpyF3I	CTNAG	2 cut(s)	243, 291
HpySE526I	ACGT	1 cut(s)	678
Hsp92II	CATG	1 cut(s)	185
Ksp22I	TGATCA	1 cut(s)	538
Kzo9I	GATC	2 cut(s)	413, 538
LmnI	GCTCC	2 cut(s)	644, 701
Lsp1109I	GCAGC	3 cut(s)	412, 421, 592
LweI	GCATC	2 cut(s)	237, 617
MaeII	ACGT	1 cut(s)	678
MalI	GATC	2 cut(s)	415, 540
MboI	GATC	2 cut(s)	413, 538
MboII	GAAGA	6 cut(s)	7, 73, 76, 116, 309, 763
MflI	RGATCY	1 cut(s)	413
MhlI	GDGCHC	1 cut(s)	131
MluCI	AATT	8 cut(s)	11, 256, 264, 303, 563, 618, 659, 736
MlyI	GAGTC	1 cut(s)	385
MmeI	TCCRAC	1 cut(s)	322
MnlI	CCTC	6 cut(s)	49, 109, 141, 206, 561, 623
MroXI	GAANNNNTTC	1 cut(s)	14
MseI	TTAA	1 cut(s)	711
MspCI	CTTAAG	1 cut(s)	710
MspI	CCGG	1 cut(s)	716
MspR9I	CCNGG	1 cut(s)	271
MvaI	CCWGG	1 cut(s)	271
MwoI	GCNNNNNNNGC	2 cut(s)	431, 602
NdeI	CATATG	1 cut(s)	493
NdeII	GATC	2 cut(s)	413, 538
NlaIII	CATG	1 cut(s)	185
PasI	CCCWGGG	1 cut(s)	270
PceI	AGGCCT	1 cut(s)	363
PdmI	GAANNNNTTC	1 cut(s)	14
PfeI	GAWTC	2 cut(s)	314, 407
PkrI	GCNGC	4 cut(s)	190, 402, 436, 607
PleI	GAGTC	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	385
Psp6I	CCWGG	1 cut(s)	269
PspFI	CCCAGC	1 cut(s)	471
PspGI	CCWGG	1 cut(s)	269
PspPI	GGNCC	1 cut(s)	507
PstNI	CAGNNNCTG	1 cut(s)	425
PsuI	RGATCY	1 cut(s)	413
SaqAI	TTAA	1 cut(s)	711
SatI	GCNGC	4 cut(s)	189, 401, 435, 606
Sau3AI	GATC	2 cut(s)	413, 538
Sau96I	GGNCC	1 cut(s)	507
SchI	GAGTC	1 cut(s)	385
ScrFI	CCNGG	1 cut(s)	271
SduI	GDGCHC	1 cut(s)	131
SetI	ASST	9 cut(s)	60, 91, 120, 217, 473, 528, 634, 681, 706
SfaNI	GCATC	2 cut(s)	237, 617
SfcI	CTRYAG	2 cut(s)	417, 744
SmlI	CTYRAG	3 cut(s)	357, 395, 710
SmoI	CTYRAG	3 cut(s)	357, 395, 710
Sse9I	AATT	8 cut(s)	11, 256, 264, 303, 563, 618, 659, 736
SseBI	AGGCCT	1 cut(s)	363
SsiI	CCGC	3 cut(s)	169, 188, 699
StuI	AGGCCT	1 cut(s)	363
StyD4I	CCNGG	1 cut(s)	269
TaaI	ACNGT	3 cut(s)	200, 421, 748
TaiI	ACGT	1 cut(s)	681
TasI	AATT	8 cut(s)	11, 256, 264, 303, 563, 618, 659, 736
TauI	GCSGC	1 cut(s)	191
TfiI	GAWTC	2 cut(s)	314, 407
Tru1I	TTAA	1 cut(s)	711
Tru9I	TTAA	1 cut(s)	711
TscAI	CASTG	3 cut(s)	426, 523, 753
TseI	GCWGC	3 cut(s)	400, 434, 605
TspDTI	ATGAA	3 cut(s)	99, 327, 712
TspGWI	ACGGA	1 cut(s)	642
TspRI	CASTG	3 cut(s)	426, 523, 753
Vha464I	CTTAAG	1 cut(s)	710
XapI	RAATTY	3 cut(s)	11, 264, 303
XmnI	GAANNNNTTC	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.