Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0007425

Physical Location & Seq

Genomic Coordinates Forward (+)

15375994 .. 15378964

Gene Structure 2971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g15530.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGGCAGGAAGTTCTTCGTCGGCGGCAACTGGAAATGCAACGGAACCTTCGATGAGGTGAAGAAGATCGTGAACATACTCAATGAGGGCCAAGTTCCATCGCAAGATGTTGTGGAGGTTGTGGTTAGCCCACCGTATGTGTTTCTTCCGGTGGTGAAGGGTTCATTGAGGCCCGAATTCCATGTCGCTGCACAGAACTGCTGGGTCAAGAAGGGTGGTGCCTTCACTGGTGAAGTTAGTGCTGAGATGCTAGTCAATCTTGAGGTTCCATGGGTCATTCTTGGTCATTCGGAAAGAAGACTGATTTTGGGTGAATCCAATGAGTTTGTTGCGGATAAGGTTGCATACGCACTTTCTCAAGGTTTGAAGGTGATAGCTTGTGTCGGTGAGACCCTTGAGCAGCGAGAAGCTGGCACAACCGTGGAGGTTGTTGCCGCACAAACCAAGGCAATTGCAGAGAAAGTGAAAGATTGGACCAATATCGTTTTGGCGTATGAGCCCGTGTGGGCCATTGGAACTGGGAAAGTTGCATCTCCAGCTCAGGCTCAGGAAGTGCATTTTGAATTGAGGAAATGGCTTCAAGCAAACGTCAGTTCTGAAGTTGCTGCATCAACGCGCATTATTTATGGAGGGTCTGTGAATGGTGCAAACAGCAAAGAGCTGGCTGGTCAGCCTGATATTGACGGATTTTTGGTTGGTGGAGCTTCTCTAAAGCCTGAGTTCATCGACATCATCAAGTCAGCGGAGGTGAAGAAGAGTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00051 ko00562 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00010 map00051 map00562 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

TIM

Protein Analysis

255

Amino Acids

27.37

Weight (kDa)

5.76

Isoelectric Point (pI)

30.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55440
fragaria_vesca	FvH4_7g22530
malus_domestica	MD00G1012200.v1.1 MD01G1134600.v1.1 MD07G1199300.v1.1
prunus_persica	Prupe.2G236000_v2.0.a1 Prupe.2G236000_v2.0.a1 Prupe.6G076300_v2.0.a1
pyrus_communis	pycom01g15530 pycom11g08880
rosa_chinensis	RchiOBHm_Chr1g0367211 RchiOBHm_Chr5g0064961
rosa_laevigata	RLG00000027289 RLG00000035744
rosa_multiflora	Rmu_sc0003352.1_g000017 Rmu_sc0011000.1_g000007
rosa_roxburghii	Rroxscaffold_1G00016360 Rroxscaffold_4G00289520
rosa_rugosa	Rorug01G0335500 Rorug05G0366800
rosa_samantha	Rh1CG319000 Rh1DG335100 Rh5CG462800
rosa_wichuraiana	Rw1G030410 Rw5G039960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	218
AccII	CGCG	1 cut(s)	616
AciI	CCGC	4 cut(s)	24, 332, 435, 743
AcsI	RAATTY	1 cut(s)	176
AcuI	CTGAAG	1 cut(s)	618
AgsI	TTSAA	3 cut(s)	367, 563, 581
AleI	CACNNNNGTG	1 cut(s)	419
AluBI	AGCT	5 cut(s)	377, 410, 539, 661, 704
AluI	AGCT	5 cut(s)	377, 410, 539, 661, 704
Alw26I	GTCTC	1 cut(s)	383
AoxI	GGCC	3 cut(s)	88, 170, 507
ApeKI	GCWGC	3 cut(s)	188, 400, 605
ApoI	RAATTY	1 cut(s)	176
ArsI	GACNNNNNNTTYG	2 cut(s)	168, 200
Asp700I	GAANNNNTTC	1 cut(s)	14
AspLEI	GCGC	1 cut(s)	618
AspS9I	GGNCC	4 cut(s)	88, 171, 474, 507
AsuHPI	GGTGA	7 cut(s)	70, 166, 242, 323, 382, 398, 760
AvaII	GGWCC	1 cut(s)	474
BanI	GGYRCC	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	501
BbsI	GAAGAC	1 cut(s)	304
BbvI	GCAGC	3 cut(s)	175, 412, 592
BccI	CCATC	1 cut(s)	106
BcoDI	GTCTC	1 cut(s)	383
BfaI	CTAG	1 cut(s)	251
BisI	GCNGC	5 cut(s)	25, 189, 401, 435, 606
BlsI	GCNGC	5 cut(s)	26, 190, 402, 436, 607
Bme18I	GGWCC	1 cut(s)	474
BmgT120I	GGNCC	4 cut(s)	88, 171, 474, 507
BmiI	GGNNCC	3 cut(s)	46, 220, 267
BmrI	ACTGGG	1 cut(s)	528
BmsI	GCATC	3 cut(s)	237, 539, 617
BmuI	ACTGGG	1 cut(s)	528
BpiI	GAAGAC	1 cut(s)	304
BpmI	CTGGAG	1 cut(s)	519
Bpu10I	CCTNAGC	2 cut(s)	540, 546
BpuEI	CTTGAG	3 cut(s)	281, 342, 416
BsaI	GGTCTC	1 cut(s)	383
BsaJI	CCNNGG	3 cut(s)	269, 420, 444
BsaWI	WCCGGW	1 cut(s)	148
BsaXI	ACNNNNNCTCC	2 cut(s)	621, 651
Bse1I	ACTGG	3 cut(s)	35, 232, 523
BseDI	CCNNGG	3 cut(s)	269, 420, 444
BseMII	CTCAG	4 cut(s)	234, 554, 560, 708
BseNI	ACTGG	3 cut(s)	35, 232, 523
BseXI	GCAGC	3 cut(s)	175, 412, 592
BseYI	CCCAGC	1 cut(s)	201
BsgI	GTGCAG	1 cut(s)	174
Bsh1236I	CGCG	1 cut(s)	616
BshFI	GGCC	3 cut(s)	90, 172, 509
BshNI	GGYRCC	1 cut(s)	218
BsiSI	CCGG	1 cut(s)	149
BsmAI	GTCTC	1 cut(s)	383
BsnI	GGCC	3 cut(s)	90, 172, 509
Bso31I	GGTCTC	1 cut(s)	383
Bsp1286I	GDGCHC	1 cut(s)	501
Bsp143I	GATC	1 cut(s)	66
Bsp19I	CCATGG	1 cut(s)	269
BspACI	CCGC	4 cut(s)	24, 332, 435, 743
BspANI	GGCC	3 cut(s)	90, 172, 509
BspCNI	CTCAG	4 cut(s)	235, 553, 559, 709
BspFNI	CGCG	1 cut(s)	616
BspLI	GGNNCC	3 cut(s)	46, 220, 267
BspT107I	GGYRCC	1 cut(s)	218
BspTNI	GGTCTC	1 cut(s)	383
BsrI	ACTGG	3 cut(s)	35, 232, 523
BssECI	CCNNGG	3 cut(s)	269, 420, 444
BssMI	GATC	1 cut(s)	66
BssT1I	CCWWGG	2 cut(s)	269, 444
Bst4CI	ACNGT	2 cut(s)	135, 421
Bst6I	CTCTTC	1 cut(s)	749
BstC8I	GCNNGC	2 cut(s)	412, 663
BstDEI	CTNAG	4 cut(s)	243, 540, 546, 717
BstDSI	CCRYGG	2 cut(s)	269, 420
BstFNI	CGCG	1 cut(s)	616
BstHHI	GCGC	1 cut(s)	618
BstKTI	GATC	1 cut(s)	69
BstMAI	GTCTC	1 cut(s)	383
BstMBI	GATC	1 cut(s)	66
BstMWI	GCNNNNNNNGC	1 cut(s)	536
BstUI	CGCG	1 cut(s)	616
BstV1I	GCAGC	3 cut(s)	175, 412, 592
BstV2I	GAAGAC	1 cut(s)	304
BsuRI	GGCC	3 cut(s)	90, 172, 509
BtgI	CCRYGG	2 cut(s)	269, 420
BtgZI	GCGATG	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	2 cut(s)	412, 663
CfoI	GCGC	1 cut(s)	618
Cfr13I	GGNCC	4 cut(s)	88, 171, 474, 507
CspCI	CAANNNNNGTGG	2 cut(s)	196, 231
CviAII	CATG	2 cut(s)	182, 270
DdeI	CTNAG	4 cut(s)	243, 540, 546, 717
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
Eam1104I	CTCTTC	1 cut(s)	749
EarI	CTCTTC	1 cut(s)	749
Eco130I	CCWWGG	2 cut(s)	269, 444
Eco24I	GRGCYC	1 cut(s)	501
Eco31I	GGTCTC	1 cut(s)	383
Eco47I	GGWCC	1 cut(s)	474
Eco57I	CTGAAG	1 cut(s)	618
EcoRI	GAATTC	1 cut(s)	176
EcoT14I	CCWWGG	2 cut(s)	269, 444
EcoT38I	GRGCYC	1 cut(s)	501
ErhI	CCWWGG	2 cut(s)	269, 444
FaeI	CATG	2 cut(s)	185, 273
FaiI	YATR	7 cut(s)	77, 138, 183, 271, 346, 495, 627
FatI	CATG	2 cut(s)	181, 269
Fnu4HI	GCNGC	5 cut(s)	25, 189, 401, 435, 606
FriOI	GRGCYC	1 cut(s)	501
Fsp4HI	GCNGC	5 cut(s)	25, 189, 401, 435, 606
FspBI	CTAG	1 cut(s)	251
GlaI	GCGC	1 cut(s)	617
GluI	GCNGC	5 cut(s)	25, 189, 401, 435, 606
GsaI	CCCAGC	1 cut(s)	205
GsuI	CTGGAG	1 cut(s)	519
HaeIII	GGCC	3 cut(s)	90, 172, 509
HapII	CCGG	1 cut(s)	149
HhaI	GCGC	1 cut(s)	618
Hin1II	CATG	2 cut(s)	185, 273
Hin6I	GCGC	1 cut(s)	616
HinP1I	GCGC	1 cut(s)	616
HinfI	GANTC	1 cut(s)	314
HpaII	CCGG	1 cut(s)	149
HphI	GGTGA	7 cut(s)	70, 166, 242, 323, 382, 398, 760
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	2 cut(s)	292, 598
Hpy188III	TCNNGA	4 cut(s)	70, 208, 260, 548
Hpy8I	GTNNAC	1 cut(s)	73
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	5 cut(s)	58, 151, 205, 232, 361
HpyCH4III	ACNGT	2 cut(s)	135, 421
HpyCH4IV	ACGT	1 cut(s)	588
HpyCH4V	TGCA	8 cut(s)	39, 191, 344, 455, 530, 556, 608, 647
HpyF10VI	GCNNNNNNNGC	1 cut(s)	536
HpyF3I	CTNAG	4 cut(s)	243, 540, 546, 717
HpySE526I	ACGT	1 cut(s)	588
Hsp92II	CATG	2 cut(s)	185, 273
HspAI	GCGC	1 cut(s)	616
Kzo9I	GATC	1 cut(s)	66
LmnI	GCTCC	1 cut(s)	701
Lsp1109I	GCAGC	3 cut(s)	175, 412, 592
LweI	GCATC	3 cut(s)	237, 539, 617
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	1 cut(s)	588
MalI	GATC	1 cut(s)	68
MboI	GATC	1 cut(s)	66
MboII	GAAGA	6 cut(s)	7, 73, 76, 137, 309, 763
MfeI	CAATTG	1 cut(s)	450
MhlI	GDGCHC	1 cut(s)	501
MluCI	AATT	3 cut(s)	176, 450, 563
MnlI	CCTC	9 cut(s)	49, 79, 109, 162, 256, 418, 561, 623, 739
MroXI	GAANNNNTTC	1 cut(s)	14
MslI	CAYNNNNRTG	1 cut(s)	419
MspA1I	CMGCKG	1 cut(s)	743
MspI	CCGG	1 cut(s)	149
MunI	CAATTG	1 cut(s)	450
MvnI	CGCG	1 cut(s)	616
MwoI	GCNNNNNNNGC	1 cut(s)	536
NcoI	CCATGG	1 cut(s)	269
NdeII	GATC	1 cut(s)	66
NlaIII	CATG	2 cut(s)	185, 273
NlaIV	GGNNCC	3 cut(s)	46, 220, 267
OliI	CACNNNNGTG	1 cut(s)	419
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PdmI	GAANNNNTTC	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	314
PkrI	GCNGC	5 cut(s)	26, 190, 402, 436, 607
PspFI	CCCAGC	1 cut(s)	201
PspN4I	GGNNCC	3 cut(s)	46, 220, 267
PspPI	GGNCC	4 cut(s)	88, 171, 474, 507
RseI	CAYNNNNRTG	1 cut(s)	419
SatI	GCNGC	5 cut(s)	25, 189, 401, 435, 606
Sau3AI	GATC	1 cut(s)	66
Sau96I	GGNCC	4 cut(s)	88, 171, 474, 507
SduI	GDGCHC	1 cut(s)	501
SfaNI	GCATC	3 cut(s)	237, 539, 617
SinI	GGWCC	1 cut(s)	474
SmiMI	CAYNNNNRTG	1 cut(s)	419
SmlI	CTYRAG	3 cut(s)	260, 357, 395
SmoI	CTYRAG	3 cut(s)	260, 357, 395
Sse9I	AATT	3 cut(s)	176, 450, 563
SsiI	CCGC	4 cut(s)	24, 332, 435, 743
SspMI	CTAG	1 cut(s)	251
StyI	CCWWGG	2 cut(s)	269, 444
TaaI	ACNGT	2 cut(s)	135, 421
TaiI	ACGT	1 cut(s)	591
TaqI	TCGA	2 cut(s)	51, 726
TasI	AATT	3 cut(s)	176, 450, 563
TauI	GCSGC	2 cut(s)	27, 437
TfiI	GAWTC	1 cut(s)	314
TscAI	CASTG	1 cut(s)	232
TseI	GCWGC	3 cut(s)	188, 400, 605
TspDTI	ATGAA	2 cut(s)	153, 712
TspGWI	ACGGA	2 cut(s)	57, 699
TspRI	CASTG	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	474
XapI	RAATTY	1 cut(s)	176
XcmI	CCANNNNNNNNNTGG	1 cut(s)	484
XmnI	GAANNNNTTC	1 cut(s)	14
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.