Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002280

Physical Location & Seq

Genomic Coordinates Reverse (-)

26150851 .. 26151741

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G242600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGAAGGAGGTGTAATATTGAGGTACATTTGCATCGTGGGTTTGTTTGCAATTGTAGGCAATAATTGGGGGTTCGAAATTGAAGGGGTTGATGGGGCTGGGGAGTGTGGGCAGCTGGACCCGGAGGTGCTGGCATACAAGCTAGCACCCTGTGCAGCCGCCGCACAGGATAAGAATGTGGAGGTTCCTCCCAATTGCTGCGCCCTGATGCAGAAGGTCCGCACAAGCTGCCTTTGTGCCATCATCCTTTCTAAAGAAGCTAAGAGCCTTGGGATCACCCCTGTAGTTGCCGTCACCATTCCTAAACGCTGCAAAATTGCTGGACGTCCTAGGGGTTACAAGTGCGGAGCTTATGTGGTGCAAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

123

Amino Acids

12.86

Weight (kDa)

8.38

Isoelectric Point (pI)

25.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002280)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G242600_v2.0.a1 Prupe.2G242700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0022311 RchiOBHm_Chr5g0022411 RchiOBHm_Chr5g0069381 RchiOBHm_Chr6g0273821 RchiOBHm_Chr6g0273841
rosa_laevigata	RLG00000032572 RLG00000032658 RLG00000033466
rosa_multiflora	Rmu_sc0000178.1_g000009 Rmu_sc0002658.1_g000011 Rmu_sc0005639.1_g000007 Rmu_sc0021631.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056610 Rroxscaffold_1G00056650 Rroxscaffold_1G00056670 Rroxscaffold_3G00231410 Rroxscaffold_7G00192730
rosa_rugosa	Rorug04G0081100 Rorug04G0081200 Rorug05G0073400 Rorug05G0073400 Rorug06G0097900
rosa_samantha	Rh4DG183900 Rh5AG160400 Rh5BG159600 Rh5BG473000 Rh5CG173700 Rh5CG173900 Rh5CG259600 Rh5CG495600 Rh5DG160000 Rh5DG160200 Rh6AG192400 Rh6AG192500 Rh6BG196800 Rh6CG195700 Rh6CG195800 Rh6DG187800 Rh6DG188000
rosa_wichuraiana	Rw0G002530 Rw5G042380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	328
AciI	CCGC	4 cut(s)	159, 162, 220, 345
AclWI	GGATC	1 cut(s)	281
AcyI	GRCGYC	1 cut(s)	325
AdeI	CACNNNGTG	1 cut(s)	152
AfaI	GTAC	1 cut(s)	26
AgsI	TTSAA	1 cut(s)	83
AluBI	AGCT	5 cut(s)	115, 142, 228, 260, 350
AluI	AGCT	5 cut(s)	115, 142, 228, 260, 350
AlwI	GGATC	1 cut(s)	281
ApeKI	GCWGC	5 cut(s)	112, 155, 198, 228, 309
AspA2I	CCTAGG	1 cut(s)	329
AspLEI	GCGC	1 cut(s)	203
AspS9I	GGNCC	2 cut(s)	118, 217
AsuC2I	CCSGG	1 cut(s)	122
AsuHPI	GGTGA	2 cut(s)	268, 286
AsuII	TTCGAA	1 cut(s)	75
AsuNHI	GCTAGC	1 cut(s)	142
AvaII	GGWCC	2 cut(s)	118, 217
AvrII	CCTAGG	1 cut(s)	329
BbvI	GCAGC	5 cut(s)	124, 167, 185, 215, 296
BccI	CCATC	2 cut(s)	86, 248
BceAI	ACGGC	1 cut(s)	275
BcnI	CCSGG	1 cut(s)	122
BfaI	CTAG	2 cut(s)	143, 330
BfmI	CTRYAG	1 cut(s)	282
BisI	GCNGC	7 cut(s)	113, 156, 159, 162, 199, 229, 310
BlnI	CCTAGG	1 cut(s)	329
BlsI	GCNGC	7 cut(s)	114, 157, 160, 163, 200, 230, 311
Bme1390I	CCNGG	1 cut(s)	122
Bme18I	GGWCC	2 cut(s)	118, 217
BmgT120I	GGNCC	2 cut(s)	118, 217
BmiI	GGNNCC	2 cut(s)	120, 186
BmrFI	CCNGG	1 cut(s)	122
BmsI	GCATC	2 cut(s)	42, 198
BmtI	GCTAGC	1 cut(s)	146
Bpu14I	TTCGAA	1 cut(s)	75
BpuMI	CCSGG	1 cut(s)	122
BsaHI	GRCGYC	1 cut(s)	325
BsaJI	CCNNGG	2 cut(s)	268, 329
BsaXI	ACNNNNNCTCC	2 cut(s)	339, 369
BseDI	CCNNGG	2 cut(s)	268, 329
BseGI	GGATG	1 cut(s)	243
BseXI	GCAGC	5 cut(s)	124, 167, 185, 215, 296
BseYI	CCCAGC	1 cut(s)	98
BsgI	GTGCAG	1 cut(s)	174
BsiSI	CCGG	1 cut(s)	122
Bsp119I	TTCGAA	1 cut(s)	75
Bsp143I	GATC	1 cut(s)	273
BspACI	CCGC	4 cut(s)	159, 162, 220, 345
BspLI	GGNNCC	2 cut(s)	120, 186
BspOI	GCTAGC	1 cut(s)	146
BspPI	GGATC	1 cut(s)	281
BspT104I	TTCGAA	1 cut(s)	75
BssECI	CCNNGG	2 cut(s)	268, 329
BssMI	GATC	1 cut(s)	273
BssNI	GRCGYC	1 cut(s)	325
BssT1I	CCWWGG	2 cut(s)	268, 329
BstACI	GRCGYC	1 cut(s)	325
BstAPI	GCANNNNNTGC	2 cut(s)	152, 228
BstBI	TTCGAA	1 cut(s)	75
BstC8I	GCNNGC	3 cut(s)	132, 144, 363
BstDEI	CTNAG	1 cut(s)	261
BstF5I	GGATG	1 cut(s)	243
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	1 cut(s)	276
BstMBI	GATC	1 cut(s)	273
BstMWI	GCNNNNNNNGC	3 cut(s)	152, 161, 228
BstSCI	CCNGG	1 cut(s)	120
BstSFI	CTRYAG	1 cut(s)	282
BstV1I	GCAGC	5 cut(s)	124, 167, 185, 215, 296
BtsCI	GGATG	1 cut(s)	243
Cac8I	GCNNGC	3 cut(s)	132, 144, 363
CfoI	GCGC	1 cut(s)	203
Cfr13I	GGNCC	2 cut(s)	118, 217
Csp6I	GTAC	1 cut(s)	25
CviJI	RGCY	9 cut(s)	98, 115, 142, 158, 228, 260, 267, 350, 365
CviKI_1	RGCY	9 cut(s)	98, 115, 142, 158, 228, 260, 267, 350, 365
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	1 cut(s)	275
DpnII	GATC	1 cut(s)	273
DraIII	CACNNNGTG	1 cut(s)	152
Eco130I	CCWWGG	2 cut(s)	268, 329
Eco47I	GGWCC	2 cut(s)	118, 217
EcoT14I	CCWWGG	2 cut(s)	268, 329
ErhI	CCWWGG	2 cut(s)	268, 329
FaiI	YATR	2 cut(s)	136, 354
Fnu4HI	GCNGC	7 cut(s)	113, 156, 159, 162, 199, 229, 310
FokI	GGATG	1 cut(s)	230
Fsp4HI	GCNGC	7 cut(s)	113, 156, 159, 162, 199, 229, 310
FspBI	CTAG	2 cut(s)	143, 330
GlaI	GCGC	1 cut(s)	202
GluI	GCNGC	7 cut(s)	113, 156, 159, 162, 199, 229, 310
GsaI	CCCAGC	1 cut(s)	102
HapII	CCGG	1 cut(s)	122
HhaI	GCGC	1 cut(s)	203
Hin1I	GRCGYC	1 cut(s)	325
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	2 cut(s)	268, 286
HpyAV	CCTTC	2 cut(s)	77, 208
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	6 cut(s)	33, 50, 155, 211, 312, 361
HpyF10VI	GCNNNNNNNGC	3 cut(s)	152, 161, 228
HpyF3I	CTNAG	1 cut(s)	261
HpySE526I	ACGT	1 cut(s)	325
Hsp92I	GRCGYC	1 cut(s)	325
HspAI	GCGC	1 cut(s)	201
Kzo9I	GATC	1 cut(s)	273
LmnI	GCTCC	1 cut(s)	347
LpnPI	CCDG	9 cut(s)	84, 101, 116, 135, 152, 163, 218, 294, 306
Lsp1109I	GCAGC	5 cut(s)	124, 167, 185, 215, 296
LweI	GCATC	2 cut(s)	42, 198
MaeI	CTAG	2 cut(s)	143, 330
MaeII	ACGT	1 cut(s)	325
MaeIII	GTNAC	2 cut(s)	292, 335
MalI	GATC	1 cut(s)	275
MboI	GATC	1 cut(s)	273
MfeI	CAATTG	2 cut(s)	51, 193
MluCI	AATT	5 cut(s)	51, 64, 78, 193, 315
MnlI	CCTC	4 cut(s)	15, 118, 175, 198
MspA1I	CMGCKG	1 cut(s)	115
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	1 cut(s)	122
MunI	CAATTG	2 cut(s)	51, 193
MwoI	GCNNNNNNNGC	3 cut(s)	152, 161, 228
NciI	CCSGG	1 cut(s)	122
NdeII	GATC	1 cut(s)	273
NheI	GCTAGC	1 cut(s)	142
NlaIV	GGNNCC	2 cut(s)	120, 186
NmuCI	GTSAC	1 cut(s)	292
NspV	TTCGAA	1 cut(s)	75
PkrI	GCNGC	7 cut(s)	114, 157, 160, 163, 200, 230, 311
PspFI	CCCAGC	1 cut(s)	98
PspN4I	GGNNCC	2 cut(s)	120, 186
PspPI	GGNCC	2 cut(s)	118, 217
PvuII	CAGCTG	1 cut(s)	115
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
SatI	GCNGC	7 cut(s)	113, 156, 159, 162, 199, 229, 310
Sau3AI	GATC	1 cut(s)	273
Sau96I	GGNCC	2 cut(s)	118, 217
ScrFI	CCNGG	1 cut(s)	122
SfaNI	GCATC	2 cut(s)	42, 198
SfcI	CTRYAG	1 cut(s)	282
SfuI	TTCGAA	1 cut(s)	75
SinI	GGWCC	2 cut(s)	118, 217
Sse9I	AATT	5 cut(s)	51, 64, 78, 193, 315
SsiI	CCGC	4 cut(s)	159, 162, 220, 345
SspI	AATATT	1 cut(s)	18
SspMI	CTAG	2 cut(s)	143, 330
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	2 cut(s)	268, 329
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	1 cut(s)	75
TasI	AATT	5 cut(s)	51, 64, 78, 193, 315
TauI	GCSGC	2 cut(s)	161, 164
TseFI	GTSAC	1 cut(s)	292
TseI	GCWGC	5 cut(s)	112, 155, 198, 228, 309
Tsp45I	GTSAC	1 cut(s)	292
VpaK11BI	GGWCC	2 cut(s)	118, 217
XmaJI	CCTAGG	1 cut(s)	329
XspI	CTAG	2 cut(s)	143, 330
ZraI	GACGTC	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.