Rh5CG173900

Probable lipid transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0002280
Physical Location & Seq
Reverse (-)
16627234 .. 16627945
712 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG173900.1

Sequence Viewer

Length: 375 bp
ATGAAGTACCTCATCGTCATCATGCTAGCAGTGCTAGTAACTGTAGGCAATCTTTGGGGATTTGATGTGGGGATTGATGGGGCTGGGGAATGTGGAAGTAACCCAGAGGTTGTGGTATACAAGCTTGCTCCATGTGGACCAGCAGCACAAGATGGGAGCTTCGCGGTTTCTCCTAAGTGTTGCTCGTTGGTGAAACGCGTTGACAAGCGTTGTCTTTGTGCCATTGTGCTCTCTAAAGAACTTCAGAGTCGTGTCCTCAACCCAGTAATCGCAGTCACCATACCTAAACGTTGTAAGGATCCCAGACATCTCAAGGGTTACAAGTGCGGAGGTAACTTAGTTTCCCAATATTCAGATTATATTACGAGTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

124

Amino Acids

13.33

Weight (kDa)

8.95

Isoelectric Point (pI)

32.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tryp_alpha_amyl PF00234 38 - 100 2.2e-08 Protease inhibitor/seed storage/LTP family
LTP_2 PF14368 39 - 102 5.5e-08 Probable lipid transfer
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 117
AccII CGCG 2 cut(s) 164, 198
AciI CCGC 2 cut(s) 164, 327
AclI AACGTT 1 cut(s) 289
AclWI GGATC 2 cut(s) 293, 306
AcuI CTGAAG 1 cut(s) 227
AfaI GTAC 1 cut(s) 8
AflIII ACRYGT 1 cut(s) 196
AluBI AGCT 2 cut(s) 124, 159
AluI AGCT 2 cut(s) 124, 159
Alw21I GWGCWC 1 cut(s) 231
AlwI GGATC 2 cut(s) 293, 306
ApeKI GCWGC 1 cut(s) 143
AspS9I GGNCC 1 cut(s) 137
AsuHPI GGTGA 2 cut(s) 202, 268
AsuNHI GCTAGC 1 cut(s) 25
AvaII GGWCC 1 cut(s) 137
BamHI GGATCC 1 cut(s) 298
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 1 cut(s) 155
BccI CCATC 2 cut(s) 71, 146
BfaI CTAG 3 cut(s) 26, 35, 373
BfmI CTRYAG 1 cut(s) 42
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
Bme18I GGWCC 1 cut(s) 137
BmgT120I GGNCC 1 cut(s) 137
BmiI GGNNCC 1 cut(s) 300
BmrI ACTGGG 1 cut(s) 257
BmtI GCTAGC 1 cut(s) 29
BmuI ACTGGG 1 cut(s) 257
BpuEI CTTGAG 1 cut(s) 296
Bse1I ACTGG 1 cut(s) 263
BseNI ACTGG 1 cut(s) 263
BseXI GCAGC 1 cut(s) 155
BseYI CCCAGC 1 cut(s) 83
Bsh1236I CGCG 2 cut(s) 164, 198
BsiHKAI GWGCWC 1 cut(s) 231
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 1 cut(s) 298
BspACI CCGC 2 cut(s) 164, 327
BspFNI CGCG 2 cut(s) 164, 198
BspLI GGNNCC 1 cut(s) 300
BspOI GCTAGC 1 cut(s) 29
BspPI GGATC 2 cut(s) 293, 306
BsrI ACTGG 1 cut(s) 263
BssMI GATC 1 cut(s) 298
BssNAI GTATAC 1 cut(s) 118
Bst1107I GTATAC 1 cut(s) 118
Bst4CI ACNGT 1 cut(s) 43
BstC8I GCNNGC 2 cut(s) 27, 126
BstDEI CTNAG 2 cut(s) 174, 337
BstFNI CGCG 2 cut(s) 164, 198
BstKTI GATC 1 cut(s) 301
BstMBI GATC 1 cut(s) 298
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstSFI CTRYAG 1 cut(s) 42
BstUI CGCG 2 cut(s) 164, 198
BstV1I GCAGC 1 cut(s) 155
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
BstZ17I GTATAC 1 cut(s) 118
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 36
Cac8I GCNNGC 2 cut(s) 27, 126
Cfr13I GGNCC 1 cut(s) 137
Csp6I GTAC 1 cut(s) 7
CviAII CATG 2 cut(s) 22, 132
CviJI RGCY 3 cut(s) 83, 124, 159
CviKI_1 RGCY 3 cut(s) 83, 124, 159
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 2 cut(s) 174, 337
DpnI GATC 1 cut(s) 300
DpnII GATC 1 cut(s) 298
Eco47I GGWCC 1 cut(s) 137
Eco57I CTGAAG 1 cut(s) 227
FaeI CATG 2 cut(s) 25, 135
FaiI YATR 5 cut(s) 23, 118, 133, 281, 360
FatI CATG 2 cut(s) 21, 131
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 1 cut(s) 144
Fsp4HI GCNGC 1 cut(s) 144
FspBI CTAG 3 cut(s) 26, 35, 373
GluI GCNGC 1 cut(s) 144
GsaI CCCAGC 1 cut(s) 87
Hin1II CATG 2 cut(s) 25, 135
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 2 cut(s) 247, 367
HphI GGTGA 2 cut(s) 202, 268
Hpy166II GTNNAC 3 cut(s) 118, 137, 202
Hpy188I TCNGA 2 cut(s) 246, 355
Hpy8I GTNNAC 3 cut(s) 118, 137, 202
HpyCH4III ACNGT 1 cut(s) 43
HpyCH4IV ACGT 1 cut(s) 289
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpyF3I CTNAG 2 cut(s) 174, 337
HpySE526I ACGT 1 cut(s) 289
Hsp92II CATG 2 cut(s) 25, 135
Kzo9I GATC 1 cut(s) 298
LmnI GCTCC 2 cut(s) 133, 156
LpnPI CCDG 5 cut(s) 69, 117, 153, 276, 316
Lsp1109I GCAGC 1 cut(s) 155
MaeI CTAG 3 cut(s) 26, 35, 373
MaeII ACGT 1 cut(s) 289
MaeIII GTNAC 5 cut(s) 37, 98, 274, 317, 332
MalI GATC 1 cut(s) 300
MboI GATC 1 cut(s) 298
MflI RGATCY 1 cut(s) 298
MhlI GDGCHC 1 cut(s) 231
MluI ACGCGT 1 cut(s) 196
MlyI GAGTC 1 cut(s) 256
MnlI CCTC 4 cut(s) 20, 100, 266, 323
MvnI CGCG 2 cut(s) 164, 198
MwoI GCNNNNNNNGC 1 cut(s) 31
NdeII GATC 1 cut(s) 298
NheI GCTAGC 1 cut(s) 25
NlaIII CATG 2 cut(s) 25, 135
NlaIV GGNNCC 1 cut(s) 300
NmuCI GTSAC 1 cut(s) 274
PkrI GCNGC 1 cut(s) 145
PleI GAGTC 1 cut(s) 255
PpsI GAGTC 1 cut(s) 255
Psp1406I AACGTT 1 cut(s) 289
PspFI CCCAGC 1 cut(s) 83
PspN4I GGNNCC 1 cut(s) 300
PspPI GGNCC 1 cut(s) 137
PsuI RGATCY 1 cut(s) 298
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 1 cut(s) 298
Sau96I GGNCC 1 cut(s) 137
SchI GAGTC 1 cut(s) 256
SduI GDGCHC 1 cut(s) 231
SetI ASST 7 cut(s) 12, 111, 126, 161, 286, 292, 334
SfcI CTRYAG 1 cut(s) 42
SinI GGWCC 1 cut(s) 137
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
SsiI CCGC 2 cut(s) 164, 327
SspI AATATT 1 cut(s) 350
SspMI CTAG 3 cut(s) 26, 35, 373
TaaI ACNGT 1 cut(s) 43
TaiI ACGT 1 cut(s) 292
TscAI CASTG 1 cut(s) 36
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 36
VpaK11BI GGWCC 1 cut(s) 137
XmiI GTMKAC 1 cut(s) 117
XspI CTAG 3 cut(s) 26, 35, 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.