Rroxscaffold_1G00056610

lipid-transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002280
Physical Location & Seq
Forward (+)
78426155 .. 78426877
723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00056610.1

Sequence Viewer

Length: 348 bp
ATGAAGTACCTCATCGTCATCATGCTAGCAATGCTAGTAACTGTAGGCAATCTTTGGGGATTTGATGTGGGGGTTGATGGGGCTGGGGAGTGTGGAAGCAACCCGGAGGTTATGGTATACAAGCTTGCTTCATGTGGACCAGCAGCACAAGATGGGAGCATCGCGGTTTCTCCCAAGTGTTGCTCGTTGGTAAAACGCGTCGACAAGCGTTGTCTTTGTGCCATGGTGCTCTCTAAAGAACTTCAGAATCGTGGTCTCAACCCAGCAATCGCAGTCACCATACCTAAACGTTGTAAGGATCCCGTACGTCCCAAGGGTTACAAGTGCGGAGCTTATACGGTGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

115

Amino Acids

12.25

Weight (kDa)

9.1

Isoelectric Point (pI)

31.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 31 - 104 1.3e-08 Probable lipid transfer
Tryp_alpha_amyl PF00234 39 - 109 2.4e-08 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 340
AccI GTMKAC 2 cut(s) 117, 201
AccII CGCG 2 cut(s) 164, 198
AciI CCGC 2 cut(s) 164, 327
AclI AACGTT 1 cut(s) 289
AclWI GGATC 2 cut(s) 293, 306
AcuI CTGAAG 1 cut(s) 227
AfaI GTAC 2 cut(s) 8, 306
AflIII ACRYGT 1 cut(s) 196
AluBI AGCT 2 cut(s) 124, 332
AluI AGCT 2 cut(s) 124, 332
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 260
AlwI GGATC 2 cut(s) 293, 306
ApeKI GCWGC 1 cut(s) 143
AspS9I GGNCC 1 cut(s) 137
AsuC2I CCSGG 1 cut(s) 104
AsuHPI GGTGA 1 cut(s) 268
AsuNHI GCTAGC 1 cut(s) 25
AvaII GGWCC 1 cut(s) 137
BamHI GGATCC 1 cut(s) 298
BanI GGYRCC 1 cut(s) 340
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 1 cut(s) 155
BccI CCATC 2 cut(s) 71, 146
BcnI CCSGG 1 cut(s) 104
BcoDI GTCTC 1 cut(s) 260
BfaI CTAG 2 cut(s) 26, 35
BfmI CTRYAG 1 cut(s) 42
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
Bme1390I CCNGG 1 cut(s) 104
Bme18I GGWCC 1 cut(s) 137
BmgT120I GGNCC 1 cut(s) 137
BmiI GGNNCC 2 cut(s) 300, 342
BmrFI CCNGG 1 cut(s) 104
BmsI GCATC 1 cut(s) 168
BmtI GCTAGC 1 cut(s) 29
BpuMI CCSGG 1 cut(s) 104
BsaI GGTCTC 1 cut(s) 260
BsaJI CCNNGG 2 cut(s) 222, 312
Bse3DI GCAATG 1 cut(s) 36
BseDI CCNNGG 2 cut(s) 222, 312
BseMI GCAATG 1 cut(s) 36
BseXI GCAGC 1 cut(s) 155
BseYI CCCAGC 2 cut(s) 83, 262
Bsh1236I CGCG 2 cut(s) 164, 198
BshNI GGYRCC 1 cut(s) 340
BsiHKAI GWGCWC 1 cut(s) 231
BsiSI CCGG 1 cut(s) 104
BsiWI CGTACG 1 cut(s) 304
BslFI GGGAC 1 cut(s) 294
BsmAI GTCTC 1 cut(s) 260
BsmFI GGGAC 1 cut(s) 294
Bso31I GGTCTC 1 cut(s) 260
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 1 cut(s) 298
Bsp19I CCATGG 1 cut(s) 222
BspACI CCGC 2 cut(s) 164, 327
BspFNI CGCG 2 cut(s) 164, 198
BspLI GGNNCC 2 cut(s) 300, 342
BspOI GCTAGC 1 cut(s) 29
BspPI GGATC 2 cut(s) 293, 306
BspT107I GGYRCC 1 cut(s) 340
BspTNI GGTCTC 1 cut(s) 260
BsrDI GCAATG 1 cut(s) 36
BssECI CCNNGG 2 cut(s) 222, 312
BssMI GATC 1 cut(s) 298
BssNAI GTATAC 1 cut(s) 118
BssT1I CCWWGG 2 cut(s) 222, 312
Bst1107I GTATAC 1 cut(s) 118
Bst4CI ACNGT 2 cut(s) 43, 340
BstC8I GCNNGC 2 cut(s) 27, 126
BstDSI CCRYGG 1 cut(s) 222
BstFNI CGCG 2 cut(s) 164, 198
BstKTI GATC 1 cut(s) 301
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 1 cut(s) 298
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 102
BstSFI CTRYAG 1 cut(s) 42
BstUI CGCG 2 cut(s) 164, 198
BstV1I GCAGC 1 cut(s) 155
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
BstZ17I GTATAC 1 cut(s) 118
BtgI CCRYGG 1 cut(s) 222
BtgZI GCGATG 1 cut(s) 145
Cac8I GCNNGC 2 cut(s) 27, 126
Cfr13I GGNCC 1 cut(s) 137
CseI GACGC 1 cut(s) 187
Csp6I GTAC 2 cut(s) 7, 305
CviAII CATG 3 cut(s) 22, 132, 223
CviJI RGCY 3 cut(s) 83, 124, 332
CviKI_1 RGCY 3 cut(s) 83, 124, 332
CviQI GTAC 2 cut(s) 7, 305
DpnI GATC 1 cut(s) 300
DpnII GATC 1 cut(s) 298
Eco130I CCWWGG 2 cut(s) 222, 312
Eco31I GGTCTC 1 cut(s) 260
Eco47I GGWCC 1 cut(s) 137
Eco57I CTGAAG 1 cut(s) 227
EcoT14I CCWWGG 2 cut(s) 222, 312
ErhI CCWWGG 2 cut(s) 222, 312
FaeI CATG 3 cut(s) 25, 135, 226
FaiI YATR 7 cut(s) 23, 113, 118, 133, 224, 281, 336
FaqI GGGAC 1 cut(s) 294
FatI CATG 3 cut(s) 21, 131, 222
FblI GTMKAC 2 cut(s) 117, 201
Fnu4HI GCNGC 1 cut(s) 144
Fsp4HI GCNGC 1 cut(s) 144
FspBI CTAG 2 cut(s) 26, 35
GluI GCNGC 1 cut(s) 144
GsaI CCCAGC 2 cut(s) 87, 266
HapII CCGG 1 cut(s) 104
HgaI GACGC 1 cut(s) 187
Hin1II CATG 3 cut(s) 25, 135, 226
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 1 cut(s) 247
HpaII CCGG 1 cut(s) 104
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 3 cut(s) 118, 137, 202
Hpy188I TCNGA 1 cut(s) 246
Hpy8I GTNNAC 3 cut(s) 118, 137, 202
Hpy99I CGWCG 1 cut(s) 203
HpyCH4III ACNGT 2 cut(s) 43, 340
HpyCH4IV ACGT 2 cut(s) 289, 307
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpySE526I ACGT 2 cut(s) 289, 307
Hsp92II CATG 3 cut(s) 25, 135, 226
Kzo9I GATC 1 cut(s) 298
LmnI GCTCC 2 cut(s) 156, 329
LpnPI CCDG 4 cut(s) 69, 117, 153, 276
Lsp1109I GCAGC 1 cut(s) 155
LweI GCATC 1 cut(s) 168
MaeI CTAG 2 cut(s) 26, 35
MaeII ACGT 2 cut(s) 289, 307
MaeIII GTNAC 3 cut(s) 37, 274, 317
MalI GATC 1 cut(s) 300
MboI GATC 1 cut(s) 298
MflI RGATCY 1 cut(s) 298
MhlI GDGCHC 1 cut(s) 231
MluI ACGCGT 1 cut(s) 196
MnlI CCTC 2 cut(s) 20, 100
MspI CCGG 1 cut(s) 104
MspR9I CCNGG 1 cut(s) 104
MvnI CGCG 2 cut(s) 164, 198
MwoI GCNNNNNNNGC 1 cut(s) 31
NciI CCSGG 1 cut(s) 104
NcoI CCATGG 1 cut(s) 222
NdeII GATC 1 cut(s) 298
NheI GCTAGC 1 cut(s) 25
NlaIII CATG 3 cut(s) 25, 135, 226
NlaIV GGNNCC 2 cut(s) 300, 342
NmuCI GTSAC 1 cut(s) 274
PfeI GAWTC 1 cut(s) 247
Pfl23II CGTACG 1 cut(s) 304
PkrI GCNGC 1 cut(s) 145
Psp1406I AACGTT 1 cut(s) 289
PspFI CCCAGC 2 cut(s) 83, 262
PspLI CGTACG 1 cut(s) 304
PspN4I GGNNCC 2 cut(s) 300, 342
PspPI GGNCC 1 cut(s) 137
PsuI RGATCY 1 cut(s) 298
RsaI GTAC 2 cut(s) 8, 306
RsaNI GTAC 2 cut(s) 7, 305
SalI GTCGAC 1 cut(s) 200
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 1 cut(s) 298
Sau96I GGNCC 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 104
SduI GDGCHC 1 cut(s) 231
SetI ASST 7 cut(s) 12, 111, 126, 286, 292, 310, 334
SfaNI GCATC 1 cut(s) 168
SfcI CTRYAG 1 cut(s) 42
SinI GGWCC 1 cut(s) 137
SsiI CCGC 2 cut(s) 164, 327
SspMI CTAG 2 cut(s) 26, 35
StyD4I CCNGG 1 cut(s) 102
StyI CCWWGG 2 cut(s) 222, 312
TaaI ACNGT 2 cut(s) 43, 340
TaiI ACGT 2 cut(s) 292, 310
TaqI TCGA 1 cut(s) 201
TfiI GAWTC 1 cut(s) 247
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 2 cut(s) 17, 120
VpaK11BI GGWCC 1 cut(s) 137
XmiI GTMKAC 2 cut(s) 117, 201
XspI CTAG 2 cut(s) 26, 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.