Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002280

Physical Location & Seq

Genomic Coordinates Forward (+)

78529187 .. 78529992

Gene Structure 806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00056670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGAAGTACCTCATCGTCATCATGCTAGCAGTGCTAGTAGCTGTAGGCAATCTTTGGGGGTTTGATGGGGCTGGGGAGTGTGGAAGCAACCCGGAGGTTGTGGTATACAAGCTTGCTTCATGTGGACCAGCAGCACAAGATGGGAGCGTCGCGGTTTCTCCCAAGTGTTGCTCGTTGGTGAAACGCATCGACAAGCGTTGTCTTTGTGCCATTGTGCTCTCTAAAGAACTTCAGAGTCGTGGCCTCAACCCAGCAATCGCAGTCACCATACCTAAACGTTGTAAGGATCCCAGACGTCCCAAGGGTTACAAGTGCGGAGCTTATACGGTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

111

Amino Acids

11.8

Weight (kDa)

9.34

Isoelectric Point (pI)

44.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	26 - 100	6.1e-09	Probable lipid transfer
Tryp_alpha_amyl	PF00234	34 - 105	6e-09	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002280)

Species	Orthologous Gene IDs
prunus_persica	Prupe.2G242600_v2.0.a1 Prupe.2G242700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0022311 RchiOBHm_Chr5g0022411 RchiOBHm_Chr5g0069381 RchiOBHm_Chr6g0273821 RchiOBHm_Chr6g0273841
rosa_laevigata	RLG00000032572 RLG00000032658 RLG00000033466
rosa_multiflora	Rmu_sc0000178.1_g000009 Rmu_sc0002658.1_g000011 Rmu_sc0005639.1_g000007 Rmu_sc0021631.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056610 Rroxscaffold_1G00056650 Rroxscaffold_1G00056670 Rroxscaffold_3G00231410 Rroxscaffold_7G00192730
rosa_rugosa	Rorug04G0081100 Rorug04G0081200 Rorug05G0073400 Rorug05G0073400 Rorug06G0097900
rosa_samantha	Rh4DG183900 Rh5AG160400 Rh5BG159600 Rh5BG473000 Rh5CG173700 Rh5CG173900 Rh5CG259600 Rh5CG495600 Rh5DG160000 Rh5DG160200 Rh6AG192400 Rh6AG192500 Rh6BG196800 Rh6CG195700 Rh6CG195800 Rh6DG187800 Rh6DG188000
rosa_wichuraiana	Rw0G002530 Rw5G042380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	298
AccB1I	GGYRCC	1 cut(s)	328
AccI	GTMKAC	1 cut(s)	105
AccII	CGCG	1 cut(s)	152
AciI	CCGC	2 cut(s)	152, 315
AclI	AACGTT	1 cut(s)	277
AclWI	GGATC	2 cut(s)	281, 294
AcuI	CTGAAG	1 cut(s)	215
AcyI	GRCGYC	1 cut(s)	295
AfaI	GTAC	1 cut(s)	8
AluBI	AGCT	3 cut(s)	41, 112, 320
AluI	AGCT	3 cut(s)	41, 112, 320
Alw21I	GWGCWC	1 cut(s)	219
AlwI	GGATC	2 cut(s)	281, 294
AoxI	GGCC	1 cut(s)	241
ApeKI	GCWGC	1 cut(s)	131
AspS9I	GGNCC	1 cut(s)	125
AsuC2I	CCSGG	1 cut(s)	92
AsuHPI	GGTGA	2 cut(s)	190, 256
AsuNHI	GCTAGC	1 cut(s)	25
AvaII	GGWCC	1 cut(s)	125
BamHI	GGATCC	1 cut(s)	286
BanI	GGYRCC	1 cut(s)	328
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	1 cut(s)	143
BccI	CCATC	2 cut(s)	59, 134
BcnI	CCSGG	1 cut(s)	92
BfaI	CTAG	2 cut(s)	26, 35
BfmI	CTRYAG	1 cut(s)	42
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
Bme1390I	CCNGG	1 cut(s)	92
Bme18I	GGWCC	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	2 cut(s)	288, 330
BmrFI	CCNGG	1 cut(s)	92
BmsI	GCATC	1 cut(s)	195
BmtI	GCTAGC	1 cut(s)	29
BpuMI	CCSGG	1 cut(s)	92
BsaHI	GRCGYC	1 cut(s)	295
BsaJI	CCNNGG	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	300
BseXI	GCAGC	1 cut(s)	143
BseYI	CCCAGC	2 cut(s)	71, 250
Bsh1236I	CGCG	1 cut(s)	152
BshFI	GGCC	1 cut(s)	243
BshNI	GGYRCC	1 cut(s)	328
BsiHKAI	GWGCWC	1 cut(s)	219
BsiSI	CCGG	1 cut(s)	92
BslFI	GGGAC	1 cut(s)	282
BsmFI	GGGAC	1 cut(s)	282
BsnI	GGCC	1 cut(s)	243
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	1 cut(s)	286
BspACI	CCGC	2 cut(s)	152, 315
BspANI	GGCC	1 cut(s)	243
BspFNI	CGCG	1 cut(s)	152
BspLI	GGNNCC	2 cut(s)	288, 330
BspOI	GCTAGC	1 cut(s)	29
BspPI	GGATC	2 cut(s)	281, 294
BspT107I	GGYRCC	1 cut(s)	328
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	1 cut(s)	286
BssNAI	GTATAC	1 cut(s)	106
BssNI	GRCGYC	1 cut(s)	295
BssT1I	CCWWGG	1 cut(s)	300
Bst1107I	GTATAC	1 cut(s)	106
Bst4CI	ACNGT	1 cut(s)	328
BstACI	GRCGYC	1 cut(s)	295
BstC8I	GCNNGC	2 cut(s)	27, 114
BstFNI	CGCG	1 cut(s)	152
BstKTI	GATC	1 cut(s)	289
BstMBI	GATC	1 cut(s)	286
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	90
BstSFI	CTRYAG	1 cut(s)	42
BstUI	CGCG	1 cut(s)	152
BstV1I	GCAGC	1 cut(s)	143
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
BstZ17I	GTATAC	1 cut(s)	106
BsuRI	GGCC	1 cut(s)	243
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	36
Cac8I	GCNNGC	2 cut(s)	27, 114
Cfr13I	GGNCC	1 cut(s)	125
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	2 cut(s)	22, 120
CviJI	RGCY	5 cut(s)	41, 71, 112, 243, 320
CviKI_1	RGCY	5 cut(s)	41, 71, 112, 243, 320
CviQI	GTAC	1 cut(s)	7
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
Eco130I	CCWWGG	1 cut(s)	300
Eco47I	GGWCC	1 cut(s)	125
Eco57I	CTGAAG	1 cut(s)	215
EcoT14I	CCWWGG	1 cut(s)	300
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	2 cut(s)	25, 123
FaiI	YATR	5 cut(s)	23, 106, 121, 269, 324
FaqI	GGGAC	1 cut(s)	282
FatI	CATG	2 cut(s)	21, 119
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	1 cut(s)	132
Fsp4HI	GCNGC	1 cut(s)	132
FspBI	CTAG	2 cut(s)	26, 35
GluI	GCNGC	1 cut(s)	132
GsaI	CCCAGC	2 cut(s)	75, 254
HaeIII	GGCC	1 cut(s)	243
HapII	CCGG	1 cut(s)	92
HgaI	GACGC	1 cut(s)	136
Hin1I	GRCGYC	1 cut(s)	295
Hin1II	CATG	2 cut(s)	25, 123
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	1 cut(s)	235
HpaII	CCGG	1 cut(s)	92
HphI	GGTGA	2 cut(s)	190, 256
Hpy166II	GTNNAC	2 cut(s)	106, 125
Hpy188I	TCNGA	1 cut(s)	234
Hpy8I	GTNNAC	2 cut(s)	106, 125
Hpy99I	CGWCG	1 cut(s)	152
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4IV	ACGT	2 cut(s)	277, 295
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpySE526I	ACGT	2 cut(s)	277, 295
Hsp92I	GRCGYC	1 cut(s)	295
Hsp92II	CATG	2 cut(s)	25, 123
Kzo9I	GATC	1 cut(s)	286
LmnI	GCTCC	2 cut(s)	144, 317
LpnPI	CCDG	5 cut(s)	57, 105, 141, 264, 304
Lsp1109I	GCAGC	1 cut(s)	143
LweI	GCATC	1 cut(s)	195
MaeI	CTAG	2 cut(s)	26, 35
MaeII	ACGT	2 cut(s)	277, 295
MaeIII	GTNAC	2 cut(s)	262, 305
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MflI	RGATCY	1 cut(s)	286
MhlI	GDGCHC	1 cut(s)	219
MlyI	GAGTC	1 cut(s)	244
MnlI	CCTC	3 cut(s)	20, 88, 254
MspI	CCGG	1 cut(s)	92
MspR9I	CCNGG	1 cut(s)	92
MvnI	CGCG	1 cut(s)	152
MwoI	GCNNNNNNNGC	1 cut(s)	31
NciI	CCSGG	1 cut(s)	92
NdeII	GATC	1 cut(s)	286
NheI	GCTAGC	1 cut(s)	25
NlaIII	CATG	2 cut(s)	25, 123
NlaIV	GGNNCC	2 cut(s)	288, 330
NmuCI	GTSAC	1 cut(s)	262
PkrI	GCNGC	1 cut(s)	133
PleI	GAGTC	1 cut(s)	243
PpsI	GAGTC	1 cut(s)	243
Psp1406I	AACGTT	1 cut(s)	277
PspFI	CCCAGC	2 cut(s)	71, 250
PspN4I	GGNNCC	2 cut(s)	288, 330
PspPI	GGNCC	1 cut(s)	125
PsuI	RGATCY	1 cut(s)	286
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	1 cut(s)	286
Sau96I	GGNCC	1 cut(s)	125
SchI	GAGTC	1 cut(s)	244
ScrFI	CCNGG	1 cut(s)	92
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	8 cut(s)	12, 43, 99, 114, 274, 280, 298, 322
SfaNI	GCATC	1 cut(s)	195
SfcI	CTRYAG	1 cut(s)	42
SinI	GGWCC	1 cut(s)	125
SsiI	CCGC	2 cut(s)	152, 315
SspMI	CTAG	2 cut(s)	26, 35
StyD4I	CCNGG	1 cut(s)	90
StyI	CCWWGG	1 cut(s)	300
TaaI	ACNGT	1 cut(s)	328
TaiI	ACGT	2 cut(s)	280, 298
TaqI	TCGA	1 cut(s)	189
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	1 cut(s)	131
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	2 cut(s)	17, 108
TspRI	CASTG	1 cut(s)	36
VpaK11BI	GGWCC	1 cut(s)	125
XmiI	GTMKAC	1 cut(s)	105
XspI	CTAG	2 cut(s)	26, 35
ZraI	GACGTC	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.